Array 1 70365-69114 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWW01000001.1 Salmonella enterica subsp. enterica serovar London strain BCW_2866 NODE_1_length_501489_cov_0.25305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70364 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 70303 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 70242 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 70181 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 70120 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 70059 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 69998 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 69937 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 69876 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 69815 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 69754 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 69693 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 69631 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 69570 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 69509 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 69448 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 69387 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 69326 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 69265 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 69204 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 69143 29 93.1 0 A...........T................ | A [69116] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80654-79772 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWW01000001.1 Salmonella enterica subsp. enterica serovar London strain BCW_2866 NODE_1_length_501489_cov_0.25305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80653 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 80592 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 80531 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 80470 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 80409 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 80348 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 80287 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 80226 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 80165 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 80104 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 80043 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 79982 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 79921 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 79860 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 79799 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //