Array 1 119-1734 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNB01000270.1 Salmonella enterica strain BCW_4945 NODE_270_length_5241_cov_5.71511, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 119 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 181 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 242 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 303 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 364 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 425 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 486 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 547 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 608 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 669 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 730 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 791 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 852 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 913 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 974 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1035 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1096 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1157 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1219 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1280 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1341 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1402 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1463 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1524 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1585 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1646 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1707 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25614-23716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNB01000032.1 Salmonella enterica strain BCW_4945 NODE_32_length_29165_cov_6.93707, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 25613 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 25552 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 25491 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 25430 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 25368 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 25307 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 25246 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 25185 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 25124 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 25063 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 25002 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 24941 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 24880 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 24819 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 24758 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 24697 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 24636 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 24575 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 24514 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 24453 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 24395 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 24334 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 24273 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 24212 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 24151 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 24090 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 24029 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 23968 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 23867 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 23806 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23745 29 93.1 0 A...........T................ | A [23718] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 986-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNB01000552.1 Salmonella enterica strain BCW_4945 NODE_552_length_1039_cov_3.71193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 985 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 924 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 862 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 801 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 740 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 679 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 618 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 557 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 496 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 435 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 374 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 313 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 252 29 100.0 32 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAAGCGC 191 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 130 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 69 29 96.6 0 .G........................... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : GGTCTTATAAATTGGGCTGATAGTGCCGCTGATGTGTTCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 494-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNB01000643.1 Salmonella enterica strain BCW_4945 NODE_643_length_611_cov_3.68015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 493 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 432 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 371 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 310 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 249 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 188 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //