Array 1 139404-141445 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB661998.1 Vibrio cholerae O1 str. 95412 vco95412.contig.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139404 28 100.0 33 ............................ TAACGAAGCGCTACAAACCGTCATCGAGGCGAG 139465 28 100.0 33 ............................ TATTTCATCGTTAACGCTCGCAACCCCTACGTC 139526 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 139587 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 139648 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 139709 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 139770 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 139831 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 139892 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 139953 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 140014 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 140075 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 140136 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 140197 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 140258 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 140319 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 140380 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 140441 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 140502 28 100.0 33 ............................ CGCTTCTGTAGAGGTGATGGGTCCAAAGATGTT 140563 28 100.0 33 ............................ TACATTCGTGATATCAGCGGATGCGCTTGGTCA 140624 28 100.0 33 ............................ CAAGGAAATTTGCTACCAAAAGACGTGATCGAG 140685 28 100.0 33 ............................ CCAAGCAGCAATAAAAATGGAGAGCAATCCTAT 140746 28 100.0 33 ............................ CCAAAGCAATTCAACAGAGGCCATCAATCGCCT 140807 28 100.0 33 ............................ TATTGCATTGAATTGCCCCACTCTTTGACCACA 140868 28 100.0 33 ............................ TCAAAATACTTCTCGCACATCCTGCAAGCGCTG 140929 28 100.0 33 ............................ CCGAATACAACGGGCAAGCCTGCGCTAACGTTC 140990 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 141051 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 141112 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 141173 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 141234 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 141295 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 141356 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [141377] 141418 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.2 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //