Array 1 300575-299412 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUKZ01000002.1 Acidovorax sp. GW101-3H11 scaffold5/1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 300574 28 100.0 32 ............................ ATGTAGACCAGATCGCCGGGCTTGCTGTTGGC 300514 28 100.0 33 ............................ AACAGGCGTCGGGCCGTTCAGCGTCACCACGAT 300453 28 100.0 32 ............................ GTTGTTGTAGCCGTAGAAGCCCACGCGGTTGC 300393 28 100.0 32 ............................ TATGTGGGCAGCAAGGTGCCTGCCGTTACGGC 300333 28 100.0 32 ............................ CGTAAGCTCGCCATCGCTTCCACCGGTTCCGT 300273 28 100.0 32 ............................ TCATCGATGGCCTTCTGGCCGTCTGCGGTGTC 300213 28 100.0 33 ............................ TAACGGTGCTGCATCTTCGCCGCTGTGGTCTTC 300152 28 100.0 32 ............................ ACAAGACACGACCAGTTGCACAAGAGGCTGCG 300092 28 100.0 32 ............................ ACTGGCACCGCGCAGCGCAAGCGCCAATACAG 300032 28 100.0 32 ............................ GTCCAGCTCAGGGCCCCGCGCAGCGGCGTCGA 299972 28 100.0 34 ............................ CACGCCCGTCTGGTAGTCGATGTGCCCCCACATG 299910 28 100.0 32 ............................ AGAGCCTCGCCCAGTTGATGCTGGTTCCAGAT 299850 28 100.0 32 ............................ TTTGCTCGGCAAACGTCCATCTTGGCCGCGTA 299790 28 100.0 32 ............................ CTGCTGTGGTGGCGGAGGCCCCTGCACTGGCT 299730 28 100.0 32 ............................ AGACAGTCGGTGGCGTCGATCACGTCTTTGAA 299670 28 100.0 32 ............................ AGAGGCTGCGGCCATTGGCGCGGGGCTGGATC 299610 28 100.0 32 ............................ ATTGAGGACGCACGCAACGGTGCGGTGACCTG 299550 28 92.9 83 ....G....A.................. CGGGCCACCAGGCTGGAGTTGGCTTCATCAATGCATAGGCAGCTCAGAAAGTTTCAGGGCCTCATGGCTGCAATAAATCTCCC 299439 28 89.3 0 ..C...............G.....A... | ========== ====== ====== ====== ============================ =================================================================================== ================== 19 28 99.1 35 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ATGGCTGCCCAAAGGGATGGGTACTCCCCCCGGTGCTCCTGCACCAATCTCACCGCACGCTCACGCACCTCAGGCGAGAACTTGTTTGACTTCTTCATGGCTCAATCCTCTCAGAGAAAAGAGCCTCCTCAAAACCCGGGGCGATTCAAAACCGAGTTCTGGACAGCGTGGGTGCGCGA # Right flank : TCACCATGACCACCAATGCAGTGACCTTCGCAGTTCACTACCGCACATGCATTACTGGCTATCTGTCCATCAAGCACATCAAACCTATCGAATCCGGAGTGATACGGTACGGATTGCCCTGATCAAATCACAAAGCTTATGTGGCGAAAGTGTAAAAAACCTGCTCGTGAATGCGACGACATCACCACCTCAGCTGCTCTCTTCGGCCCACAGAATGAGGGTTGATGCCAGAGGCGGGCTCACCTGATTGTGGCCAAAATCGGCAGACATTTTTTGGTGTCCTCCCATGAGCCCCAGCCAGATCATTGTCCTCGCCACCCCGGTCTTCTTCCTGCTGATCGCCATCGAGCTGGCCATTGGCTACAAGCGCCAGCGCAACACCTACCGACTGGCCGATGCCGTGAGCAGCATCAGTCTGGGCATGCTGAGCCAGACCAGCGCCGTGTTCACGCGGCTGCTGCGCATCGGCATCTACACCGCGCTGTTCGAGCATCTGGCGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10515-153 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUKZ01000009.1 Acidovorax sp. GW101-3H11 scaffold5/16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10514 28 100.0 32 ............................ ATGAACGGTTTTGTCTGGGGCGCGGCGGCCAT 10454 28 100.0 32 ............................ AGCGCCAGCGGCCAAGCCTGCGCCACCGGCAC 10394 28 100.0 33 ............................ AGCGCGGCAGACACCGTGACGGCGGTCATCGAA 10333 28 100.0 32 ............................ AGCCACGCGCATGGCATAGGCCATGACCACGC 10273 28 100.0 32 ............................ AGCACCTGCACCCGCATCGCGGGGCTTTTTTC 10213 28 100.0 32 ............................ AAGCGGTCGCAGGATCTCTGGCGGTGTCAGCC 10153 28 100.0 32 ............................ ATGTGTGGGTGATTTCAGGGCGTGCGCGCTCT 10093 28 100.0 33 ............................ AATCGCTTCATCACCCAGGCGGGCGCCTACCCT 10032 28 100.0 33 ............................ GTTGAGGTAATACTGGCCGGTCGGGCTGATGGC 9971 28 100.0 32 ............................ GATCCAGGCAAGGCCGCGCAGCTTCTTGCTGC 9911 28 100.0 32 ............................ GGGCGCGGCCCGGCCTGTTCGCCGTAGCGAGT 9851 28 100.0 33 ............................ TTGGTCTTCAGGCCATCAAACGTGTCCTGAATC 9790 28 100.0 32 ............................ GTCGAGCGCCAGTTCTATCGACAATTCGCGAG 9730 28 100.0 32 ............................ ATCGATCCATCTGCCGCCTGCACCACCTGGCC 9670 28 100.0 33 ............................ ACGCACCCATTGTCGTTCGGCGACTGGAACCCG 9609 28 100.0 32 ............................ AAGCCATCCTGGGCGCCTGATGGCTGGTCGGA 9549 28 100.0 32 ............................ ATCCTCCCGGAGAACAGCATGGGTTTTTCCTC 9489 28 100.0 32 ............................ ATTCGGTGATATACATGTCAACACCAGAAGGT 9429 28 100.0 32 ............................ TGAGCCATCCATGGCATGGCCGCGTGTGGTGC 9369 28 100.0 32 ............................ ACGGCGATCAGGGTGCATGCGTAGTTCATTGA 9309 28 100.0 32 ............................ AGCGCGCGCTGGCGGAGGGTAGGACCTGGGAT 9249 28 100.0 33 ............................ CCAGTTCATGCCCGCCACCGCGCGGGAGCTGGG 9188 28 100.0 32 ............................ TCCACCTCCGGCCTCAGCCTGGCGGCCGTATC 9128 28 100.0 32 ............................ AGCGCCTTCTCCCCAGCCTCCTTCACCTGGCC 9068 28 100.0 32 ............................ AACTACGCCAACGATGTTCGCACCGCACGCGA 9008 28 100.0 32 ............................ TCACCCCCGTAGCTGTTCACGTCGAAGATGAT 8948 28 100.0 32 ............................ TGAAGCGACATCATCGTCGCCTTCAACTCGTC 8888 28 100.0 32 ............................ TGGTGCGGCGCATGCAGGACCGAACTGGGAAC 8828 28 100.0 32 ............................ TTCGCCCGCGCTGATCTTGAGCGCCAATACAA 8768 28 100.0 32 ............................ TCCTTTCCTTTGATGCCGTGGGCGGCTTCGAC 8708 28 100.0 32 ............................ TTCTGGCGGCTGAATTGGCCGCCATTGCTGTA 8648 28 100.0 32 ............................ AGAAGTCGCGCTCGTAGATCGCAACAGCGTCT 8588 28 100.0 32 ............................ AGAACCTGCTGCGCTTGCGCCTCGGTCGCATC 8528 28 100.0 32 ............................ ACGAACGAGCTGGAGCTGCTTGGCAAGACGGC 8468 28 100.0 32 ............................ ACATCAAGAAGCCGCCGAACGAAGACCACAAG 8408 28 100.0 32 ............................ TGCTGTCTCGCGCACACGTTCGCGCCTGGCTC 8348 28 100.0 32 ............................ TTCACCGTGATGTTGAGGTGGTCGGCCTCAAT 8288 28 100.0 32 ............................ TCATCAACCCGGACTACGAGAAGTTCCTCGCC 8228 28 100.0 32 ............................ AAGTGCGGCACCTCGCCTCCGGTGATTGCTGC 8168 28 100.0 32 ............................ AAAGTAAGTGCGGGTTTGCTGGTGCTCGCGGT 8108 28 100.0 32 ............................ CCTGCTCGGCCTGCAGCGTTTTGATCGCCTGC 8048 28 100.0 32 ............................ AAGCACCTGCTGACGTTGTGGATCAGCACGAA 7988 28 100.0 33 ............................ ATGCAAGAGGCCCAGTGGTTCATCGACCGTGGT 7927 28 100.0 32 ............................ GACCTGGGCCACCCCAGCGCCCGAGAAATCGC 7867 28 100.0 32 ............................ AAAGGGGGCGAGAAATGAACCGACGGCAGTAC 7807 28 100.0 32 ............................ TTGCTGTCGTGCTGCTGTGTGTGTCGGTATTC 7747 28 100.0 32 ............................ GATGATCCCCATGGATAACGCTGACATACCCG 7687 28 100.0 32 ............................ AAAGCACGCGCGCTGCTGGCCCAGTGCCTTGC 7627 28 100.0 32 ............................ AATCAATACCCCTGCGATGGGCATGATGCCCA 7567 28 100.0 32 ............................ ACCGTGCAGCAGATGGTGCGCGAAGGCCACTT 7507 28 100.0 33 ............................ AAATACGTCGCCAAGAACATCGACGGCTACCGC 7446 28 100.0 32 ............................ ACCGTGCGGTCGTAGCTGCGCGCCACGTAATT 7386 28 100.0 32 ............................ ACTGGTACGGGTCGGCGTCGAGCAGGCGAGCA 7326 28 100.0 32 ............................ TCGGACGCGGCTGCGCTGGCAGCCGATGCCGT 7266 28 100.0 33 ............................ CAGAGGTCCATGCCGTGGCGCGAATGCGGAAGT 7205 28 100.0 32 ............................ TTTGATGCCGGATTGAATAAGGCCCCGGCGTT 7145 28 100.0 32 ............................ ATGCGTGGATCAATCGGCATAGTCAACACTCC 7085 28 100.0 32 ............................ GAAAAACAGCACGTCAGGGGTTCGGGGTGTGA 7025 28 100.0 32 ............................ AAGTGGGGCCAACCATCCGGGGCGGTCGATTG 6965 28 100.0 32 ............................ ATGGCGATCAGTCGTTGATCGCGGCCAGCACC 6905 28 100.0 33 ............................ TATGACTGACTACGCCGAATTCCTCCGGGCCAA 6844 28 100.0 32 ............................ AAGCCCATGCAGATTTGAGAGGAACACCATGA 6784 28 100.0 32 ............................ GTCTACACCCAGGCCGACCAGGTGTTGAGGGA 6724 28 100.0 32 ............................ ATGAAGATTTCACGGATGCGGTCGCGGTCCAG 6664 28 100.0 32 ............................ ATAGACTGGGCCGAGATAACCGTTCTCATTGG 6604 28 100.0 32 ............................ ACAACCGGCACGCTAGAAGAAGCCTTCACGCA 6544 28 100.0 32 ............................ TTGCTGCCTGGTGCTGTCATGCAGTCGTACAA 6484 28 100.0 32 ............................ TGATGTACGCCACTCGCGCGGTGGCACAGCCG 6424 28 100.0 32 ............................ GACCCGCTCTTGATGCGGCAACACAAGCCAAC 6364 28 100.0 32 ............................ GAAGTGGCCGGGTGTTCTCGGCAGTTCCATGC 6304 28 100.0 32 ............................ ACAGCAGCAGGAGACTCGCCAACCATGCGCGC 6244 28 100.0 32 ............................ TTCCAGAGTGGTGTTTCCCAGCGGTCAATAAC 6184 28 100.0 32 ............................ TCTGGAGACACGGAGCGGTTGAAAGCGCCGAT 6124 28 100.0 32 ............................ GTCGTCTGCGCGGCGACCGATGATGCTGACAA 6064 28 100.0 32 ............................ TGAACGAATCCGCCCCTGGTTGGATGGTGCTG 6004 28 100.0 32 ............................ AAACTTGCGAATCGCTAGGCACCCCCGCTTGC 5944 28 100.0 32 ............................ GTGTCTCCCCAGGAGATCAAATCGCCCAAGAA 5884 28 100.0 32 ............................ AGCCACGATTGCACATGCACGCGCGACACGAT 5824 28 100.0 32 ............................ TTTGCCGACCTGGGCGACTTCATCCGCATCAC 5764 28 100.0 32 ............................ ACCCATCGGGCGAGCGGGCCGCGTTCAACAGT 5704 28 100.0 32 ............................ AGAACTCAACGTGACCCAGCAACGCGCCGTAC 5644 28 100.0 33 ............................ TGCTGTTCTGCGTGCAATGCGCGGCGCTTCCAC 5583 28 100.0 32 ............................ CTCCCCTTCAGCCACTCGTCCACCCGAGCCTG 5523 28 100.0 32 ............................ AGAGATCCTGCGACCGCTTGGCCAGTTCGACC 5463 28 100.0 32 ............................ AAGTTCATCGGCGACTGGGCTGGCAAGACAGG 5403 28 100.0 32 ............................ ACCCGAACGACCCGGGCGGAGAAACTAAATTC 5343 28 100.0 32 ............................ TAACCCAACAGCCCGCACCACGCGGGCTTTTT 5283 28 100.0 32 ............................ ACTCTGCACCATTTTGACCTTTGGGGCTGGTA 5223 28 100.0 32 ............................ TGGCCCAACTTTACGGGCGAGGCCTGGGTGCT 5163 28 100.0 32 ............................ TTGCGCCCCTCCGCATCGATGTAGGTGCCGTC 5103 28 100.0 32 ............................ ACCGAAGGCGAATTGTTTGAACCGAAGGAGAT 5043 28 100.0 32 ............................ ACCCCCTCGGCTGATGTGGGAGCCGGTGGCAG 4983 28 100.0 32 ............................ CATGACCAGGAGCGCTGGCTTCTGGTTGATGC 4923 28 100.0 32 ............................ ACGGAACGCGGAAGGACGTGGCCGATTCAGAG 4863 28 100.0 32 ............................ CTATGCAGAGCCGCCCGCCCCGCCAGCGCCAC 4803 28 100.0 32 ............................ ATGCACTGCTGCTCCATCTGCACGCGGTACAG 4743 28 100.0 32 ............................ ATTCCCTCTGGGGGAGAGGGGTGGGTGAAGCC 4683 28 100.0 32 ............................ GACCAGAACACGGTGAAGAACGCCCTCCGCCA 4623 28 100.0 32 ............................ ATTTCGACCTTTGGGGCTGGTACTCGCCCGCC 4563 28 100.0 32 ............................ AGACGCTCAAAGCAGGCGCGGGTTTTGATGTG 4503 28 100.0 32 ............................ TTCCGCGTTCCGTTGGTGCAGCAGTTCACCCC 4443 28 100.0 32 ............................ ACCCCCTCGGCTGATGTGGGAGCCGGTGGCAG 4383 28 100.0 33 ............................ ATGACGGCGCACAGGTGGCCGGATGGCTGGCGG 4322 28 100.0 32 ............................ AGACGACAAACAACACGTACACCGACAACCGG 4262 28 100.0 32 ............................ AATAACACGTACACCGATAACCGGCAGGTGAA 4202 28 100.0 32 ............................ GAAGCACGCGCGCTGCTGGCCCAGTGCCTTGC 4142 28 100.0 32 ............................ TCCATAGGCATTGAGCAGGCCGGGCACCTGCG 4082 28 100.0 32 ............................ AGGCCACTCCATCCCACGCAGCAGACACGCGG 4022 28 100.0 32 ............................ TTCATCGGCGGCCTGGGCACCGTCAATTACGG 3962 28 100.0 32 ............................ ATGAAGCACGACGAATGGCTGACACCGCCAGA 3902 28 100.0 32 ............................ GCGCCCCATTCTGTGGCCGGTCGGCTGCGCAG 3842 28 100.0 32 ............................ ATTTCCCGGGCCTGGGCCGGGTTCATGGTGAA 3782 28 100.0 32 ............................ GGTCGCACGAACTACCGCGCCACCCGCGACGG 3722 28 100.0 32 ............................ TTACCGAAACAAGCCCATGGAACAAATTTGCA 3662 28 100.0 32 ............................ GTCGCAGAGGCACGTACCTGCACGATGGCAGC 3602 28 100.0 33 ............................ ACGGTGATGAGCGCCCCGGCCGTCAGCGTCTCG 3541 28 100.0 32 ............................ AGAAAGCACCCGAATGCGTTGTCTTTGGTACT 3481 28 100.0 32 ............................ ATGAAGCACGACGAATGGCTGACACCGCCAGA 3421 28 100.0 32 ............................ TCAACGCCAACACGCAGTAGCCGGGGGTCAAA 3361 28 100.0 32 ............................ ACATGGAGGGCATAGCGAAGGGGCAGGGCCTG 3301 28 100.0 32 ............................ GCAGGCAAAGCCAGTGTTACCGGGGGCGGCGA 3241 28 100.0 32 ............................ ACCAACGCCAGACACGATATTCACATATCGGG 3181 28 100.0 32 ............................ AGGAATACCGGCGCCGGTATCGTAGCGGACAG 3121 28 100.0 32 ............................ AACATCATCAAAGACACCCGAAACCGCATCCT 3061 28 100.0 32 ............................ GCTGTAGCGCATGTGCAGGTGATGCCGACTAT 3001 28 100.0 32 ............................ AGCAACTCCAGCGCCTGCTACGCCCAATCAGC 2941 28 100.0 32 ............................ ATTCGGTGGCCGGGCGGCTGCGCAGGACGACG 2881 28 100.0 32 ............................ AGGGGTAGCGCGGGCCGCATCCATGCCGCGCA 2821 28 100.0 32 ............................ AGTGGAAAGACGAAGACCGCCGTGTTCCTGCC 2761 28 100.0 32 ............................ CGGCATGTCTGGCACTTGAGCCGGCGCGCACC 2701 28 100.0 32 ............................ GGCAGGCCAACACGCTATGAAGGCCTCTCTTG 2641 28 100.0 30 ............................ TTACCCCCCCCCGCAAAACTGCGCCTGAAC 2583 28 100.0 33 ............................ CAGACCACCACCGCCAGCCGCTGATGCACCGGT 2522 28 100.0 32 ............................ AGCAACGGCGCGGGCGTTGTGGTTCTGTCAGG 2462 28 100.0 32 ............................ GGGCAGCCTTCGACCTGAACAAGCCGCAGCGT 2402 28 100.0 32 ............................ TGAAAAGACTCAGAACCCAGAGCACCGCACCT 2342 28 100.0 32 ............................ AGTCTGGCGACTCGTTCAGGATCACCATGTCA 2282 28 100.0 32 ............................ ATTGCTCAATCGCCCGGGCGTAGTCCTTACCC 2222 28 100.0 32 ............................ CACCAGCGTCCCATGTAGAGGCTGCCGTCAGG 2162 28 100.0 32 ............................ ACTGCCAATGCCGGTTCGATGAAGATGGCCGC 2102 28 100.0 33 ............................ GTCTTCGTGCACGACGTAGGCCTTCACTTGTGT 2041 28 100.0 33 ............................ CTTCACATCGGCCGCTGGCCACGGTAGGCGCGT 1980 28 100.0 32 ............................ GTTGCAGAGGCAATGTCCATGCAGTCGCGCAG 1920 28 100.0 32 ............................ CGCAGCGTCTGGGGCTTCGTTCGGTAGTGTTT 1860 28 100.0 32 ............................ ACTTGGGTATCGCGCGGCAGTTTGCCCAGTGC 1800 28 100.0 32 ............................ AGCACATGGGGCATCCGGCAGTTCCAGCAGGT 1740 28 100.0 32 ............................ CGTGAGCCGCCCGAAAGGAAACAGCGCTGACA 1680 28 100.0 32 ............................ AGCTCGCAGTGGCTGTAAGGCCCACGGTCAAT 1620 28 100.0 32 ............................ AGCCAACCTGCAGGTGCGGCCGCAGCCATTGC 1560 28 100.0 33 ............................ ATGAAGAGCCCGCCGTTGTGTTGCAGCACCAGG 1499 28 100.0 32 ............................ CGGAAAATCCCACCATTCAAGCCTGTGGGCCA 1439 28 100.0 31 ............................ TACGCCGCAAAGCGCTACACCGGCATTTGAT 1380 28 100.0 32 ............................ GCCCGGACTGGCCGCGCCACCGCGTACGGCCC 1320 28 100.0 32 ............................ AGCTCCGCCAGCGTGTATTCCTGGCCCAGCTC 1260 28 100.0 32 ............................ GCCACGACCTTCACCTTTGTTCCGGCGAGCAG 1200 28 100.0 32 ............................ ATCAACGCAGGCCCAGACGCTGTGCTGCACCA 1140 28 100.0 32 ............................ CGTTGCATTGCGTAACGGCGGGCAAGTGCTGG 1080 28 100.0 32 ............................ GTCACAGTAGGCATAGAAGTAATCGGCCGCCA 1020 28 100.0 32 ............................ AGCACGCTGACGCAGGAATCCGGCCGCACGGC 960 28 100.0 32 ............................ ACGCAGGCCACCACCGTGATGCGCCCCGGGAA 900 28 100.0 32 ............................ ATGGCGGCCAGGATCAGAGGGAAATCGGCCTC 840 28 100.0 32 ............................ GATGGAGCCACCCACCCCCGCGCCGGTGATGG 780 28 100.0 32 ............................ TATAGCCCGTTGAACAACTATGCGACGGTAAC 720 28 100.0 32 ............................ TGCTCGCCCCGCGCGATGCATCGGTGGCCATT 660 28 100.0 31 ............................ TGACCGCGATAGCCTGCGCTGCAGCGATCAG 601 28 100.0 32 ............................ GTGCCGTCCAGCGGCGGGATGAGCGCGTTGAC 541 28 100.0 32 ............................ TGTCTGCTGATCGCCAGTGCCTTGACGCTCGC 481 28 100.0 33 ............................ TGCCGTGAAGGTCGTGGCTGAGCTGGTGGACGA 420 28 100.0 32 ............................ AAAAACCACCATCGGGACCATGGCCTGCCTGT 360 28 100.0 32 ............................ TTGTTGGCAGGGCCTTTGGCCGCCAGCTCCGC 300 28 96.4 32 .............C.............. TTCCCAGGCATTCAGCAAAAGCCCCTGCCAGC 240 28 100.0 32 ............................ AGCAGCCCGTCCGGTTTCAGGAACTTGTGGGC 180 28 96.4 0 ...T........................ | ========== ====== ====== ====== ============================ ================================= ================== 173 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCCTGACGGGGCAAGACTGGCTCAAAGGCATGCGCGACCACACGCAGGCGGGCGAGCTGCTGCCAGTGCCCGCCAACGCACAGCATCGCACCGTGCGCCGCCGCCAGTTCAAGACCAACGTAGACCGGCTGCGCCGCCGCCGCATACAGCGCAAGGGCGAAACCACCGAGCAGGCCGCAGCCGCCATCCCTGACACGGTGGAGCGCCGCCCCGACCTGCCGTTTGTGCAACTGCGCAGCAGCAGCACGGGCCAGCCGTTTTGCCTGTGCGTGGAGCACGGCCCGCTGCAGCAGCAGGCGGTGGCGGGAGCCTTCAACGCCTATGGTCTGGGGCACGAAGCGACCGTGCCCTGGTTTTAAGTCGGTTTGACCCTTTTTTTGGGGACCTGCGCAGGGCCCTTTGAAATCAAGCACTTACGGAACACCCCAGGAATTGGGGTGTTCTGGCTTGAATGGGGAATGCTCCTTAAAAATCAAGTAGTTGGGAGGCTAGAGTTCTA # Right flank : AAAACTGAATCGCCCCGGCTTTCGTGGAGGCCAGTTGGTTTAAGTCAGGCCACCATCATGGCAGTCTGACTGGCGAGTTGCCGGTAGTAGTTTGCCTCAGCTTCTACGGGCGGGATGTACCCGATGGGTTCGAGCAGCCTGTGATGGTTGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //