Array 1 51112-52793 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOIQ01000003.1 Rothia koreensis strain JCM 15915 NODE_3_length_194660_cov_29.4614, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 51112 29 100.0 34 ............................. GCGGATAGTGTCGGTTTTGGTGCAGCGGGGCGGT 51175 29 100.0 33 ............................. ACCGGAGGTACCAGCTCCGGAAAACATGAAACA 51237 29 100.0 32 ............................. AGTGGCACGATGGCCGGCCACGGTGTATTGAC 51298 29 100.0 32 ............................. GTAGCGCTCTACATTCGGGACGAACAAAGTGA 51359 29 100.0 32 ............................. TCGGGGTATTCGCCGGTGATCTCGGCGTACGC 51420 29 100.0 32 ............................. TGCTGCGCGTGAACGCGCCCGAGCAGCGGCGG 51481 29 96.6 32 G............................ CTCGCAGAGCGATTCAGCGAATGGGTGTGGGA 51542 29 100.0 33 ............................. AGGTCGGTCTGTCCGGCGATATTGCTGTGTTTG 51604 29 96.6 32 ........................C.... TTCAACGCCCCGTCGGTGGCGTCCTAGGCCCG 51665 29 100.0 32 ............................. CGGGGCGGGACTTGGACTCTGTTTATGACATT 51726 29 100.0 32 ............................. CCAGGTTGGTTCCGTTGCAGCCGGGTGATGTC 51787 29 100.0 32 ............................. CAGGGCGAGGAATACAAGGGCGCCGCCCTGCA 51848 29 100.0 32 ............................. GAATAATCCGGGCGCGGCTCCCCCAACACGAT 51909 29 100.0 32 ............................. CCAGGGGGTGCGTAGTGCGAGCTGGTGAACTA 51970 29 100.0 33 ............................. CACGCCCGGATCACCTCGAAATCATCCGGCGCA 52032 29 100.0 32 ............................. TTTGGGCAGTTCCAGTTCTGCGCTATCCGGGC 52093 29 100.0 32 ............................. CCGGTCTCCGTAGCCGCCAAAGCCTCAGACGA 52154 29 100.0 32 ............................. ACTAAGAAGAAGCACGCCCGCAAGGTCGCGAA 52215 29 100.0 33 ............................. CAGGCCGCGGCCATGCGGGCGGCGTGCAACGAG 52277 29 100.0 32 ............................. CGGGCCTCGTCCAGCCCTTCGTGGTTTTCGGG 52338 29 100.0 32 ............................. CGCCGGTCCAGCCCGTCGAATGACCGACCAAA 52399 29 100.0 32 ............................. CGGGCCTCGTCCAGCCCTTCGTGGTTTTCGGG 52460 29 100.0 32 ............................. TGAGACCCCGGTCCCCATAGGGAGGTTAAAAG 52521 29 100.0 32 ............................. ATCCACTCCCGGTACAACTGGCCCACACCATC 52582 29 100.0 32 ............................. CAGAGAGGAACTGTCATGGCAATGCTCGATGA 52643 29 100.0 32 ............................. TCATCGAAGTGCGCGGCGACGTGAGGGTAAGC 52704 29 100.0 32 ............................. CAGCTGAACACCGGGACCAGGATGGCGTTGAT 52765 29 93.1 0 ...........A..C.............. | ========== ====== ====== ====== ============================= ================================== ================== 28 29 99.5 32 ATCTTCCCCGCGCCTGCGGGGGTGTTCCC # Left flank : GTCCTGCTGGACTGCGTGGATTTATCACCCGTTGGTTGCTTGAAATTTCAGCCGGGGTATTTGTGGGCTGTGTTAGTGCGCGGGTTCGTGACGAGATCTGGAAGGCAACGGTGGACCTGGCCAAGAACGGACGTTCCATCATGGTCATTGACGCCGATAACGAGCAAGGGCTGGATTTTCGAGTACATCGACACGATTGGATTCCCAAAGATTTTGATGGCCTGACCCTGATGCAACGTCCGTTACCAGGGCCGGTCAGCGGGACCATCTCTCGAACTAAAAACTTCGATTCCGAGGCGTCGGGCGGCCCCAACGACTCTCCTCAATTTAAGGGCCAGGAATCGGGGGAGTCAGGACGTACGCCAGATAGGGGATGGAGCAAGGCATCGCGCAGGCGGTTCCTTAAACGCACCAAAGATTAGCCTTGTCCTGCGATCCTGACCTCGTCGAAAGTGAATGAATTTTGTTGCTTGGGACTACAGTTGTCTACGGAAAGCAGT # Right flank : CGAAGGGGACAGGCAGAACTCCCCAGCAACCGAAACCATCACCGCGCCCGGGGACGGGACCACTGGCACCCAGGCGTCGCCGAATATCTTCCCGGCACCGTGGGGCCCAGGACGAGGGGGCACCCGCCCTCTGCCATTCTCCACGTCGGGGCCGGCTGGTCGCCTACGGCTTTATCTTCTAGGATCCAGGCGCTACGAGAGAGCAACGAAGCTGAAGTAATTGGGATAGTTGTCGGGTAAAAGGCTATACCTCCTGCACGTGGGGTCAGCGGCGCGGCTGCTGGCCCTCGAGCTCTCCCCGGGAGAATGCATCCAGCTTTCCCCTCACGAGGCGCACGGCGAGCCACACCGCCTCGGCGACCATGATCACCAGCAAGAACCAGCGTGCGACGACGAGCCCGGCGGCAAGTCCCGGCCATGCACCGGCGGGGTCGGACAGAGCGGCGTCGACCGCAAGGTTTCCGGCGATCGTCAGGACGACGAACACGAGCGGCGGGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCCCCGCGCCTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //