Array 1 17479-16488 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIZ01000003.1 Providencia rettgeri strain AMW279_S1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17478 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 17418 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 17357 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 17297 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 17237 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 17177 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 17117 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 17057 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 16997 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 16937 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 16876 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 16816 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 16756 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 16696 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 16636 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 16576 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 16516 28 89.3 0 ...T......A.........T....... | G [16490] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27888-26116 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRIZ01000003.1 Providencia rettgeri strain AMW279_S1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27887 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 27827 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 27766 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 27705 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 27645 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 27584 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 27524 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 27464 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 27404 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 27344 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 27284 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 27224 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 27164 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 27103 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 27043 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 26983 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 26923 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 26863 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 26803 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 26743 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 26683 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 26623 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 26563 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 26503 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 26443 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 26383 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 26323 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 26263 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 26203 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 26143 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //