Array 1 736969-736460 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOYS01000002.1 Cedecea colo strain ZA scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 736968 28 100.0 32 ............................ AGGAAACCTGGTTAAAGATAGATGGCGATACC 736908 28 100.0 32 ............................ TCAAAAGGCTGCATGGCATACGGCGATATTAA 736848 28 100.0 32 ............................ ACAGCAGGCGATCACATTCCCGGTCGGTGTAC 736788 28 100.0 32 ............................ GACAAAGACAGTTGACTCCCTCTGCACACTCG 736728 28 100.0 33 ............................ GATCCGCAAGCTGTACGAAGTGCTGCACATGAG 736667 28 96.4 32 ..G......................... ATAAAAGGCGGAACCCTGAACCATCTGCAGAT 736607 28 96.4 32 ..G......................... TCCATGGTATCGGCTATTGTTTCTGGGTCCAG 736547 28 96.4 32 ..G......................... CGGAGCGATTGCCGTCGCTGGTTCCGGGTCGT 736487 28 75.0 0 ..G........T.A.......CA.A..A | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAG # Left flank : CTTTGCCGTTATCGATGAATTTGGCCTGCGGCTCCATCAGTCTCCGACAGGGAATGATATTCGTTCGATAGGATTGCAGTTTAGCCGCTGAGTTTTTTGCTATGAAATAAAAACTCGCCTGCGTGATAATTCATGTAAGCGAGTTTTTAGCAAATAATATTTTATTAGCGAAATGCTTATCCTGGACGTCTGTTCCTGATGTAATTATTCAGCCGTTATAAAAATTAGTTAAAAAATCTGGTTGGTATTTTCAGCTTAACTGTATAAGCCTTTGTTTATCCTTAGGTAAATAAAGACGTTCGCTATTGTGCTGGTAGCGTGGAAAGATTTTTACCTAACATATTAAACATCCGTGCGTGGCTGCTGGTGAACCCTAATTTTTTAAGTAGCGTTAACCCTTTGATTTTATTGCGATGAATTTAACCGCCAGAAAAAGGGTAAGCGCATAAAAAGCGGGTTTTTTGCGCCTTGCATCAATCGATTATACGTGTAAAGTTCCT # Right flank : TAAAAACTTTTCCCCAACCAGCCCTCACCCGTAATAAATATTTCAACCTTTTGTTTAACTTCAAAATTATGTAATTTTCCGTTTGAGATGGCTTACATGCAGGAGTTAAGGTGATGACTTAGCCAGTGGATGCCGGGGATATTATTACCGAACCGGTCTTTATGCCTCCTAAGGATATTTCCGTTATGCTTATGCCTTCAGACTTAAAAACTATTCTGCATTCAAAGCGCGCCAATATTTATTATTTACAATATTGTCGTGTACTGGTTAACGGCGGGCGGGTGGAATATGTTACCGAAGAAGGTAAAGAATCGCTTTACTGGAATATCCCTATCGCAAATACCACCGTAGTGATGCTGGGAACCGGCACTTCGGTGACTCAGGCTGCGATGCGTGAATTTGCCCGGGCCGGGGTAGTAGTTGGGTTTTGCGGTGGGAGTGGCACGCCGCTTTATTCCGGCAACGAAATGGATATTGATGTTTCCTGGATAACGCCGCAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : GTGCACTGCCGCACAGGCAGCTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 739725-738857 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOYS01000002.1 Cedecea colo strain ZA scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 739724 28 100.0 32 ............................ GTGATGGATGCGCGAAAAGTAAAGAAAGCAAT 739664 28 100.0 32 ............................ TGCTCGATTATGATGAGCAGCTCATCAAATTT 739604 28 100.0 32 ............................ AGCCGGATATCCTCCGTAATAACCATGCCGTC 739544 28 100.0 32 ............................ ATCCGCGCTTTGCGTTTGCAGTTATTCCGGAT 739484 28 100.0 32 ............................ GTTCTCTGAAATGGAGTTGAACTCCTCTCCAC 739424 28 100.0 32 ............................ CAACCGGAACATTCCAGCAGATCGCATCAGCT 739364 28 100.0 32 ............................ AGCGAAAAAGGCAAAGAGCTGCGTAAAGAATC 739304 28 100.0 32 ............................ TGAGTGTGGCTTTCTTCCAGCTCCGCGATGCG 739244 28 100.0 32 ............................ TTGCCGCAAGGGGTTAACTAAATATTGTGATA 739184 28 100.0 32 ............................ TCAACGATTTCTCGCTGATGGTTGCTTAGTCC 739124 28 100.0 32 ............................ GACAGACGGATATCACGCCCGAGACGGTGCTG 739064 28 100.0 32 ............................ ACCCTGCCGGATAACCTGAACGTTGGCGGCTC 739004 28 100.0 32 ............................ TTACTTTTTTATGGAAATCACCCATACAATTT 738944 28 96.4 32 ....................T....... GGTGTTCGATGCTGCTGAGTAGTCGCCGGTGT 738884 28 82.1 0 .C.........C.....T..T...A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCACGAATCGTGGATCAACACGTCTGAAGTATAGGAAACAAGTTCCGGAAACGATGCTGCGGTTGCGCGGCGTTAAGCCCAGGCGCTCACAGAATTACGCTGATGTTGTGGTTGCTATGTACTTCAATCGGCTCCCTTCGGTCATTAATGGAGAAACTGTCTCTACGACGGTATTTTTTGTTCATAGACGCGCACGGCTCAGGAGTTAAAGTGCCAGGGGCGATTGTCAGCGGATAAATATTGCGTTATAGCGGGATAATAATTTGCCACACCGTCACCCCGCAACGAGGTATTTCCATTTCAGGAAAGCGCCTCGAAAAATATTTTCCTGGAATGAAAAAGTTGCATGATTTGAGTGAAAGCCCTCAAACCCTAATTTCGGTATCAAATATAAGCTATTGATTTTTAATCTCTTAATAGAGAGGGTGAAAATTAGGGGTTCAAAAGACTAAACGAGTTTTAGGCATTGTTAATCAAAGCGTTATCGGTGTATTGTTCCT # Right flank : TATGCCCACCTTGTTTGAAAAAGCTTTTGCCACTTCCAGTTAAAACCGAATTCACCACCTCGGCTGATTTTCTCGCAGGAAAACAATGTCTATAAATGGGTGGAAAATTCCCTGCCAACCGGCTGTCAGGTAGCCACATCGTAACGTATTTTTAAGATATTTGTATTTACATTGAAAGTTGCAGCCCAATCTCTGACACGGCATGATATACCCTGATTAAAAGGAGATTGCATGAAAGAGTTGGCTTCATTTTTAAATGGTTTCGGGATCGTCATTACCCAGACAACCTCGCTAATTATCATTTTAAGCATTATTTTTATATTTTCGCTTATTGTACATTTTATTCTACATAGTATTGTGCTGCGTACTTTTGAGAAGCGGGCGAAATCCAGTCAGCATTTATGGCTGCAAATTATCACTGAGAACAAGCTCTTTCAAAGGCTCGCTTTAACGTTGCAGGGGATTATCGTCAATATCCAGGCGGTATTGTGGCTACAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 749031-748643 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOYS01000002.1 Cedecea colo strain ZA scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 749030 28 100.0 32 ............................ ATCAGCGCACGATAGAAGTTCAGTACCGAATT 748970 28 100.0 32 ............................ AACAGCAGCGACTGGACAATCCTCGGCGGCAT 748910 28 100.0 32 ............................ CGCAGCAGGAATGGGTGACTGGCGTTTCTTCA 748850 28 96.4 32 ...G........................ TGGCCGCGTACTTGCTGAAATGATATCGAGCA 748790 28 96.4 32 ...G........................ GGTACGGACGGGGAGCCGAAGGGGGCCATGAT 748730 28 96.4 31 ...G........................ ATGTACCGATTCAGGTTCGCGGCGATCTGCC 748671 28 71.4 0 ...C.......C.T...T..A.G.A..T | C [748647] ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTGAACTGCCGTACAGGCAGCTTAGAAG # Left flank : GCTAACCGTTATTCTGGAACTTACGGTGCGTAACCATCCGGGCGTGATGTCTCACATTTGTGGTCTGTTTGCCCGCCGCGCTTTTAACGTTGAAGGCATTCTCTGTCTGCCGCTATCTACCGGCGATCGGAGCCGCATCTGGCTTCAGGTCAATGATGACCAGCGTCTGGAGCAGATGATCAGCGAGATAGATAAGCTGGAGGACGTGGTGCAGATCAAGCGCGACGTCGACGGCGCCGACGTATTTGGCAAGCTAACGGCATTAGTGCAGTAAATTCAAAAGCGGTGGGTGAGACGTTCAGGTTTCATCCATTGCCGTTTGGAAAAAGTTGACGACAGCAGAGCGGCGTGGCTACCGTTAAACAGGAAACCCTAATTTTAATGCATTTTATAATGCATTGATTTTAATAATAAAAATTTAATGGCGCCAGAAAAGGGTTCTTCGCTTCGCAAGTCATTTTTTACGCTTTGCATCAAGAGGTTATACATGTAAAGCTTCT # Right flank : AAAGCACTTAACTAGGCGTATAAATTGGGCGGCTCGCGGCCGTTCAGGATGCGCAAATATACCATCGGTTTTTTGTTGCTTAGGTGTGGCTTTTAAGCAGCAGAAAACTGGGAATAGCTGCTGGATAAGCTGGCCAAAAAGCGGTTTATGAAAAGGCCTAGTTTATGTCTGCTACGGCGTAAACACGCCGAGAGTGGCATCTGTTTGTTTTAATTTTATTGCTTAAAGATTGCTCTTAGTTGCCAGGCAAGCCCCTGTTCAGCTTCTATACTTGTGGTTTGTGTAAATAAAAAAGGAGCGAATATATGACCATTCATAAGAAAGGGCAGGCTCACTGGGAAGGTGATATTAAAGGCGGTAAGGGCACGGTATCCACCGAAAGCGGTGCGCTGAAACAGCAACCTTATGGTTTTAACACCCGTTTCGAAGGCGCTGCTGGTACCAACCCGGAAGAGCTGATCGGCGCGGCCCATGCTGCATGTTTTTCCATGGCGCTGTCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAG # Alternate repeat : GTGGACTGCCGTACAGGCAGCTTAGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //