Array 1 94145-92584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXQF01000001.1 Streptococcus iniae strain DX09 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 94144 36 100.0 31 .................................... TAAGAAAATCATCGAAACTCCTAAGCAAGCG 94077 36 100.0 31 .................................... AACAACTTGATTAACCCATCTGCAGTTTTCT 94010 36 100.0 31 .................................... TAAGAAAATCATCGAAACTCCTAAGCAAGCG 93943 36 100.0 31 .................................... AACAACTTGATTAACCCATCTGCAGTTTTCT 93876 36 100.0 30 .................................... ACCAGCTGCAAGAGAATGTCCTAAATGTTA 93810 36 100.0 31 .................................... TTCAAATAGTACCGAGTTACAACTGCAAACA 93743 36 100.0 30 .................................... TTAAATAGATCCCAATATTCTAAGTCGTAA 93677 36 100.0 30 .................................... TTGTCAGTCTGTGATTGCTTAATCCCTCCT 93611 36 100.0 30 .................................... ACCAGCTGCAAGAGAATGTCCTAAATGTTA 93545 36 100.0 31 .................................... TTCAAATAGTACCGAGTTACAACTGCAAACA 93478 36 100.0 30 .................................... TTAAATAGATCCCAATATTCTAAGTCGTAA 93412 36 100.0 31 .................................... TTCAAATAGTACCGAGTTACAACTGCAAACA 93345 36 100.0 30 .................................... TTAAATAGATCCCAATATTCTAAGTCGTAA 93279 36 100.0 30 .................................... TTGTCAGTCTGTGATTGCTTAATCCCTCCT 93213 36 100.0 30 .................................... CCTCACCATCAGGCAAAGACCTTGATACCT 93147 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 93081 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 93015 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 92949 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 92883 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 92817 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 92751 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 92685 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 92619 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== =============================== ================== 24 36 98.8 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //