Array 1 35908-35158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGPR010000038.1 Paraburkholderia sp. Ac-20340 NODE_35_length_80848_cov_27.521475/0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35907 28 100.0 32 ............................ TGGTTGAGGTAGGCGCGCGCCTGGGTGATGTG 35847 28 100.0 32 ............................ ATAACCGGCGACCAGTCGGATGAATTCCCCTT 35787 28 100.0 32 ............................ AAAGAGCGCGAGCGCTTCGCGCAACTGAAGAC 35727 28 100.0 32 ............................ AGCGACTCAGCGGTACGCGCTGCCTTCGCCTT 35667 28 100.0 32 ............................ TTCGCACCGGCCTTCGCGTCGGCCTTGGCGCC 35607 28 100.0 32 ............................ GGCCAGCACCGCGCCGAACGCACCGAGCACGC 35547 28 100.0 32 ............................ CATACCTGCGTTGAACAGCTTGGCGCCGGTCG 35487 28 100.0 32 ............................ GATATGGAAGCGCAGCAGATACCCGGCATATT 35427 28 100.0 32 ............................ ATGTCGAAGTCGGCCGACGTGGAAGCGGACCC 35367 28 100.0 33 ............................ CGTCGAAGGTTCAGAAAGGCGAAGAACTGGTCG 35306 28 100.0 32 ............................ CGTCGCGGGAAGCGCAGGGCAAGAGGCGAGCG 35246 28 100.0 33 ............................ CTGCACAGTGGATGGGTCATAGCCAAACTCAGC 35185 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Left flank : TGCGTTGCGAGAGTTGTTGGCACTTACCTGGTTGCAGGGTATGCGCGATCACGTTGAGTTGACGGATGTGCTGACGGCGCCTGCGAACGCCACGCGGTGTGTTGTGCGCAGGCGGCAGTTTAAGACCAATGTTGAGCGGCTGCGGCGCAGGCGGATGCGGAGAAAGGGGGAGACTGTGGCGCAGGCTGCGGCTGCGATTCCGGAGTCGGTCGAGCGGAAGCCGGATCTGCCGTATGTGCATGTGCGTAGCGCGAGCACGGGGCAGCCATTTTGTTTGTTTATCGAGCAGGTGATTGAAGGGGAGGTTGAGGGGAAGGGTGGGTTTAATTCTTATGGGCTGAGCGCAGGAGGGGCCGTGCCGTGGTTTTGACCTTTTTTCTGGGCGTGTTTTGAGGGGCTATAAGAATCAAGGGGTTAGGGGGCGTTGGGGAATTTGGGTGGTTTGTGGTGGAAGTGCAGGTTTTCGTTTTAAATCATGGGTTTGTGGGCTTTTTGGGCTA # Right flank : GAGTCACTGGATGTCCGCTGACACCGCGCGTTTTCGAGCCAGCATAGGCTGAAACTCAACTATTCCTCAGACCTAATCCTGCCTCACTCAGGCACACAACCCCCAATCGAGAGGTTACGTTCGATCGGCATTAAAAACGTTACGTCTGTGGCGTAACACGCATTGTCGATTCATTGGAATAGTCATTTGCAAACGATTTAAAGCGCCAATGCCATCAAGACATTGAGCGCTTTCTTTCACTTCTTTCTACTGTCTTTAAAGGCGCGAATCGAAATTCGATTTGCGCTTTTTTATTGGCCTGGAACTTGCGATTATCGAGCGCCCGATCCAGCCATATACGAGCACGGCGCTACAGCGTTCGGCCCGGCACACAAATCAAGGCGACGCGCGACCACGCGATGTCGGGTATCCAGTAACCGTATAGAGCAAGAACGATCAGCGGTTTCCCGGGGGCACTGATTACACCTTTGACCAATCAGGTCGCGATTTCATCGCGAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45449-47697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGPR010000038.1 Paraburkholderia sp. Ac-20340 NODE_35_length_80848_cov_27.521475/0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45449 28 100.0 32 ............................ GCCGCCTTTCCACGGCTCGAGGCCGCGATGAG 45509 28 100.0 32 ............................ GGTGACGCCTGCTGATTTTGTTGCCGCTGCGC 45569 28 100.0 32 ............................ CAAACATCCATATCCTCATCTGCGCAGACGAT 45629 28 100.0 32 ............................ ATGTACGCACAGCGCCGGAATCGACAACCCCC 45689 28 100.0 33 ............................ AATCAAACGATCGCGCCTTCGCTGTGTCTTCGC 45750 28 100.0 32 ............................ GAATTCATGCAGGGACTCCAAGCTCGATACGA 45810 28 100.0 32 ............................ AGATCTCGCGCGTAGCGTCGCGGATAGATTGG 45870 28 100.0 32 ............................ TCCGGCCACGTCTTGAAATTCTCCGCGATTAC 45930 28 96.4 32 ..........T................. CCTGAGCATTAACGAGCATTCTTACCTCATAA 45990 28 100.0 29 ............................ TCACCCGCGCCCGCTGCTGCGCCGTCGGC 46047 28 100.0 32 ............................ ATGCGTTGCAGCCGCCCGCGCGCTTACCTGAT 46107 28 100.0 32 ............................ AGATCGACGCATAGCTAACAATAAATAGAACA 46167 28 100.0 32 ............................ TGAAAGAGAAACGTGCTCAGCGGGCGAGGCAC 46227 28 100.0 32 ............................ GCGATCGCGCGGGCCAGAATCGCGGCCTTTCG 46287 28 100.0 32 ............................ CAGCGCAGTAACGTTGCGTGAAACGCGCCGTG 46347 28 100.0 32 ............................ TTCCAGACGCAGCTCGCTCAGTCCTCAGCGCA 46407 28 100.0 32 ............................ TGGGCGGCGTGGCCACGTGCGGCTCGGGCTGG 46467 28 100.0 33 ............................ CGGGGCTAACGCAATCCCTCGCGTGGTGACAAC 46528 28 100.0 32 ............................ ATCGATACGGTATCGAACGGCGTCCGTTCCGT 46588 28 100.0 32 ............................ GTTAGCGCACGTGAATCCCGCTTCGACAAGCG 46648 28 100.0 32 ............................ CGAACGGCGGAATGCCGCCCGCTGCGGGCAGC 46708 28 100.0 32 ............................ ACGCCCAGCACTGCGCTCGATCCGGTATCACT 46768 28 100.0 32 ............................ ATGGATACGGTGTCGAACGGCGTCCGTTCCGG 46828 28 100.0 32 ............................ CGCCGCCGCAGAGCCGTTGCGACGCGAGGCGC 46888 28 100.0 32 ............................ GTGCCAGCTTCGTAATTGCGGACGCCACAGAC 46948 28 100.0 33 ............................ TTCGAAGCATTCCAAGTGGAGAATCAAAGTGAC 47009 28 100.0 32 ............................ CAGAGCTGGCCGTAATCGTCGGCGGCGCGGTA 47069 28 100.0 32 ............................ TTCGGAACCGGCGCCGTCGTTCGGGTAGCCGT 47129 28 100.0 32 ............................ GTTGACAGGTTCTTCCACGCGGGCGGCGCCCA 47189 28 100.0 32 ............................ ACTCCCGTCTGAAAATATGGGTCACGTCCACA 47249 28 100.0 32 ............................ GTCGAGCGCCGACCAGATGCCCATATCGCCTT 47309 28 100.0 33 ............................ AATCCAGATGCGCACGGTCCAGATCGAAACCGG 47370 28 100.0 32 ............................ GGCGCTTGCGCTGCATCGGAAGGAGCGAGGGC 47430 28 96.4 32 ...........G................ TCGCTGCTCGTGCGCGAGGCACTTCTCGATCC 47490 28 92.9 32 .................C.......G.. ATACCGACCAGCGTATCGATCTTGCGTGCCGC 47550 28 92.9 32 .................C...C...... CGATGGCCTGTTCGAAGAGTCGGGCGACGCAT 47610 28 96.4 32 ..C......................... ATATCGGGCCTATCGGCATCGTGGATGATGCA 47670 28 71.4 0 C...A.C.....A...A..A..C..C.. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.6 32 GTTCGCTGCCGCGTAGGTAGCTTAGAAA # Left flank : GTACACGACAATGTTCGAGGTAGTAGAGGTTGGCGCGTTTTGAATGGAGGATCGTTTTGAGGTCCGATGCGGCGATGGGTTTCATGGGCGTCGGGATTGAGGGCGGGTGTTGGTGGGGGTTGGTGGGAGTTGCGGCGTGAAACGGGTCGCGCTCGATGGGTGGCGAGGCAATGGGCATCGATGAAAGCACGGATCGAGCGTGGGGGACTTGGGGACGCGCAAGATGTTTGCGATATCGCGGGCGCGATATTTGTTTGCGACGCGGATTCTTGAATTTTTGTATTATTTTTCGGAATTTTGGGAGTGGGGGTTGTGAGGGGATTGGTCGGTTGGTGGTGTGGCGCGTGATCAGTGTGGCGTTATCTCGGTAACCCTTTTTTCTGCGGGCGGGAACGGCCCATTTGAATCAAGGGCTTAGGTACAGAGGGAATATTTGGGTGGCGGCAATTGGGAAGCCACTTTGGCTTTGTAAAACAAAGCGTTATGATTCGAAGCCACTT # Right flank : ATCGCCAGCAACAGAACATTGCGCGATAACCGTGCTCACTTCCGCCTACGCGGCCCAGCAACGCATAACCCGCTCCTGAAAAATCGAAACACTAATCCCTGCCGCACAGGCAGCGCCCCTCACACCGCCCCACCGCCAACCCTCGCCCTACGCACAAAAATCTGCCGCACCACCGCCTGCCCGTTGACGATCAACAACCCCGCCAGCACCAGCGCCGACCCCGCCAGAAACGCCGCATCGACATGCTCATGCAGCAACACCACACCCAGCGTCACCCCAAACATCGGCGTCATGAACGACAGCACGCCCAGACGCGCGGCAAAGTATTTGCGCAGCAGCCAGAACCACGCCAGATAGCTCACGAACGTCACCACCACCGTCTGAAACGCCAGACTCGCCAGCGCAAAACTGGTCGGATGAAAACCCGTCTGCCCGGTGATAAACGCAAACGGCACCAACAGCACAAACGCGCACGCCAGCTGACAAAACAGCGTCTGCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //