Array 1 394-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZI01000103.1 Streptomyces albidoflavus strain NRRL B-2307 contig103.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 393 28 100.0 38 ............................ GATCTGGCGCGGCGTCGGCGGCGGCCTCTGCGGATGGT 327 28 96.4 33 C........................... GGCATCCTCCGCCAGCTCCGGATCGGCCAGACC 266 28 89.3 32 ..A........A............T... GGTACGCGGGCTGGCGTGCGACCAGTACGTCA 206 28 75.0 0 .CT.G.......T.C....C.....C.. | T [199] ========== ====== ====== ====== ============================ ====================================== ================== 4 28 90.2 35 GTGGTCCCCGCGAGGGCGGGGGTGGTCC # Left flank : GTTCGTGGATTGGGGGGTGTGGTGGGAGGGGGGGGCGTAGGTTGGGGGTTGAGAGGGAGGGGAACGGTGATGGGTAAAGGGATGGCAAAGGCCGTCTGAAGGTGCAGGTCGGGAAG # Right flank : CCCGCCAGACCGGACTGCTGACCCCCCGCCCAGCTCCCCAGCCGAGCCGACCGAAACCCATCCCGCCGAAGCCCAAGCACCCCTAAGACCGCAAAAGCCGCATACCCCACCCCATCCCCGCCCTGCCCGCGCGTCAGCCCCACCAAGCCCCCCCCCGCATCGCCCACCAAACCACCCC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52838-52988 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZI01000004.1 Streptomyces albidoflavus strain NRRL B-2307 contig4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 52838 24 100.0 39 ........................ TCTTTGACCGGCAGGTCACATCGGACCGGCGCACAACCC 52901 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 52965 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCGCCCTCGCCATCGGGTACGCCCTACTCCGCCACCGGGACGCCTAGCCAGACGGGACCAGGCCATCGACCGGGTGGCCTCAAACGCCGGCCGGGCTTGAGTGGCCTCAATCGCCGGCCAGGCTCAGTGGCCTCAAGCGCCGGCCGGGCTACCAA # Right flank : AAACCCCCAGCCCGCCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGTTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 9778-12000 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZI01000070.1 Streptomyces albidoflavus strain NRRL B-2307 contig70.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9778 29 100.0 32 ............................. GCGGTGCTGGCCACCGTCCCGGACCCCGAGGG 9839 29 100.0 32 ............................. ACGCACATCGGCCGGGTGCTGGCGATGGAGCG 9900 29 100.0 32 ............................. ACGGGGTACATCGTCACCCCCGTCGTCGGTCG 9961 29 100.0 32 ............................. GACGATGCCCAGCCAGGGCGGGAGTAGCGGCG 10022 29 100.0 32 ............................. GCCGCCGACGCTGAGGGAGACGGCGGCCAGTA 10083 29 100.0 32 ............................. CCGTCCTCGATCGACTCCCGCACCGCCTGGGC 10144 29 100.0 32 ............................. TCGGTGATCCAGGCGCCGTGCTCGGGCTCCTC 10205 29 100.0 32 ............................. CCGACGAGGGGGCCCTGCTCGCGGATGATGAC 10266 29 100.0 32 ............................. GATCTCATCCAGGCCCGGAAGGACGCCGCCGA 10327 29 100.0 32 ............................. CAACCAGCCCGAGCCGGCCGCCGACGTGACGC 10388 29 96.6 32 ............................A GTTTCGGTTATGACCCCTTATGTCCGCTTTAG 10449 29 100.0 32 ............................. TCCTTGAGGTACGGGGAGATCGACACCCAGTC 10510 29 96.6 32 ............................T CCGCGCGCGCGTACCGGTACAGGGCCACCCAC 10571 29 100.0 32 ............................. CTGCCGGTTGATCTCCCGGCGCAGGCTGTCCG 10632 29 100.0 32 ............................. ACCGCCGCGCCGACGTACAGGGCGGCCTTCTG 10693 29 100.0 32 ............................. TAGCAGCGGCCGCCGTGGATGGCGGCGTACTC 10754 29 100.0 32 ............................. TACGAGACCGCGACCCGTGGCCGGCGCGCCTT 10815 29 100.0 32 ............................. CCCATCCGGGTGACGGTGGACGTGCGGCCCAC 10876 29 100.0 32 ............................. ACGGGGGTGGTCGTCGTGGCCGGTGGACCTCA 10937 29 100.0 32 ............................. TTGGCGACGTGGGAGTGCACGTCCGCCATGAG 10998 29 96.6 32 ............................T AGAGATGGCCGGCCCCGGCGTCTCCGGCATCG 11059 29 100.0 32 ............................. TAGTGCGCGAGCTGCCCAGCAAACGGCAGCTC 11120 29 100.0 32 ............................. GCGCCGTGCGCACCACCGGCGAGCCCATGACC 11181 29 100.0 32 ............................. CCCGCTGTCCGGGGTGCTGCGGGACCTGGACC 11242 29 100.0 32 ............................. GCGCCAGCCGGCCAGGCGCCCCAAGTTCTCGG 11303 29 100.0 32 ............................. TGGGTGGCCCTGTACCGGTATGCACGGGCAGA 11364 29 100.0 32 ............................. CTGGGTGTGGACGTCGGCGGCGCGGGGGTATC 11425 29 100.0 32 ............................. CACCCAGTCCGGCGGTAGTGGCCGACGAGCCT 11486 29 100.0 32 ............................. GTGGTACCACCTTGCGGGTGGCATGGGTGATC 11547 29 100.0 32 ............................. CGACCACACCGGGCCCGGCCCGTACGCGGCAG 11608 29 100.0 32 ............................. TCGCTCTACGACCCGGGGACCGGGCGGCCTCG 11669 29 100.0 32 ............................. TTGCCGAACCCGCTCGGCAACCACACCGGCGG 11730 29 96.6 32 .............A............... CTCATGGGCCTCGACATGCCCGTACGCGGCAG 11791 29 96.6 32 .............A............... GTGGAGGCGGCGGTGCAGTCGACGTGGGGTAA 11852 29 100.0 32 ............................. CCTGAGCACGTCGGCAGTGCCGACCTGGTGCG 11913 29 100.0 32 ............................. CTGGCCCGCGCTGACAGCCACCTCGCCGACCT 11974 27 82.8 0 ...T....--.................AT | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.1 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : CCGGCTGCTCCCGCGCATCGTGGGAGACATCCAGTCCTTGTTCCAGCCTGGCTTCACCGCCCCGGATGACCTGGAAGAACAGGTCGTCGACCTGTGGGACCCCGAGACCGGAAACATCCCAGGCAGCCGAAACCACGCCCCCACCTGACATCGCGAAAGACGCCATGCCGAACATGACCGTCATCAGCGCCACCGCCGTTCCAGCACACCTTCGAGGCGCTCTGAGCCGCTGGCTGCTCGAAATCACACCATCTCTCTACATCGGAACCATCTCTGCCAGAGTCCGAGAAGAGCTATGGAACAAGACCACCGCGAGCATCACTGACGGAAACGCCGTCCTCGCCTACCCATCGAACTCAGAACAGGGTTACACCGTCCGCACCGCAGGTCCCCAACGGCGCTCCCCCGTCGACTTCGAGGGCCTCGTTCTCATGGCTTTCAAGGACACCGAAAGAAGTAAAGAAACCGCAAAGAGCGGGTGACGCCGCAGGTCACGAAGG # Right flank : TGCCAGGCCAGAACCTCCAAGGCATCCTTTCTGCACGTGCGGGGTAATTCAGGCGGGTCTGTATGTGACGGGCTGCGCACTCGTTCGCTCCGGGCATGCGGAGTGCTTCGGTATCAGGGGCCGCCCCAGCGCGACATCATGTCGGCTCCGCGTCTGCCGGGCTGTTCCGCCATCAACCGCCGCGTTTCACACGCCGTTGGCCCCCACCTTCTTTTCTAGGGGGCTGCGATCCGGCTGAAGGGCACCGCTCGCACGGCAGCCCGCTGCCTGAGAGGGCCGGTTGATGAGTTTCCTGTGCTGGCTTGCCCTTGCCGTGTTGCCTGACTTCGGGCAAGCCTGCGGCAACTGCTTCTGTGGTGGTGGGGCAAGCCTTTGGGCAAGCGGCAGTGTTGAGAGTGAGGGGCACATCGTTCTCCAGGAGGTGTGCCGTGCACTACGGACCGACACAGACGCTGTACGCCAAGACGCTGACCACGATCAGGGCGGCCACCACACGACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1384-3125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNZI01000075.1 Streptomyces albidoflavus strain NRRL B-2307 contig75.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1384 29 100.0 32 ............................. ACATCCCCACCGGCAACTTCGGCGGCCAACGC 1445 29 100.0 32 ............................. ATGGCCGTGGACGCGTAGCGGGCCATGTCCGC 1506 29 100.0 32 ............................. CAACTCCTCAACGCCGCGGTGGCCGCCATCGC 1567 29 100.0 32 ............................. CGACAGCGGCGTTACCCGTGCAGGAGGCGAGC 1628 29 100.0 32 ............................. CTGCTCCAGATGGCGGCGATGTAGACGCAGGC 1689 29 100.0 32 ............................. ACGAGGGTGTCGGCGCCGTTGTGGAGAATCCA 1750 29 100.0 32 ............................. CCGTATGACCAGCTCGTAACTGAGCTGACCCT 1811 29 96.6 32 ..............G.............. CCGGTGCGGGCGGCCGGCTCGCCGGGGATGAA 1872 29 100.0 32 ............................. GGGACCGTGACGGTTTACGACCCCGCCGACAC 1933 29 100.0 32 ............................. ACCGCGATCAAGGCCACGGCGAAGGGCGCGAT 1994 29 100.0 32 ............................. TTCGAGGCGGCGGGCGTGATGGTGGTCGGGCC 2055 29 100.0 32 ............................. GACCAGCCCATGACCACCTGGCACGTCGCCGT 2116 29 100.0 32 ............................. CACGCGTGCCCGCGACCACGAGTGGCTCATTG 2177 29 100.0 32 ............................. CAGACCAGGCAGAGCCAGATGCGGCCGCAGGT 2238 29 100.0 32 ............................. CAGGGGCGGCCACGCCGGTCGGTCTGCGTGCA 2299 29 100.0 32 ............................. CGGTACCGGCGGGCGGCGGCGTCCAGGATGAC 2360 29 100.0 32 ............................. CTCGGGGACGCGGGCGGTCACCTGGGGCCGTG 2421 29 100.0 32 ............................. ACGAGACGGACGGCGCCGGTCGACGCCGGGCC 2482 29 100.0 32 ............................. TCCCCGGCGTGGATGGCGACGGGTGGGCCTGT 2543 29 100.0 32 ............................. GACGGTGCCGACATGGAGCGCGTGACGCATGG 2604 29 100.0 32 ............................. CTGTCCCACGGCATCGGCGGCCTGTCGACCCG 2665 29 100.0 32 ............................. CGGAAGGCCGCCCTGAAGCCGCGCCCGGAGCC 2726 29 96.6 32 ............T................ GGGCTGGTGGGCTCGTGCATGTCAGACGGCCT 2787 29 100.0 32 ............................. GTGACGAAGCTGCCCAGCAAGGAAGGCACCGG 2848 29 100.0 29 ............................. CCGCCGCCGGGTCTACTGGCCGGCCGGAC 2906 29 93.1 32 ..........T.....T............ GCGATGGTGACGTCGGCGGTAGGGCCTTGGGT 2967 29 100.0 40 ............................. CTGAACGCGGGCGGCGGGCGCCGTGATGGCCGGTCCGCCG 3036 29 93.1 32 ..........T....A............. CGGCCGGGGGACATGGCGGCCGCCTGGCGGCT 3097 29 89.7 0 ..........T....A.......G..... | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 98.9 32 GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Left flank : GCCGTACATCGCGTCCCCGTCCACCACCTTGAACGACTCCGGGACCTTCACCACGAACGGCGGCGTGATCTTCCCAAGGTCATGAAGCCCCGCCCAGAACCCCGTCACCAACCTCGCCTCCGCCACCGACAGCCCCAACTCAGCCGCGATCCGCCGGCGCATCCCTTCGCTCAACACCTCGTCCCACAACACGAGGAACACCGCAGCCGAGTCCAGCAAATGACAGATCAACGGATACAGGCCAGGAAGCCCATGCTCTTTCCCCCAGAACCGGACATCCAGCGCGAGGCGCTCACCATTCGACATGAGGGCGTCATAACACCCCTCACCGACAACCCCTCCTGACCTGCAGTTACACATGGCTAGCCGCCCCCCCGTCCATCCGCAAAATCCGCGATAAGGTCCGCTACGTGACCCATCCCCAACCCACGCGCCCCTCCCAGCCATCAGCCTTCGTTCAAGAGATTGCAAAGGCCCTATAACGCCGCAGGTCAGTAAGG # Right flank : GTCGACGACGGCGCGGGGTCGTGGCGGTCGGCGGTCCGGGGCGGCCGAGGATCGGCGGATGGTCTCCCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGGAGTCGCGTCGGCCCCGCACGCGCGGGATGCCTCCACTCCGTGCCCCCGAGGCGCCATGCGGTGGGTGATCTTGGCGTACGCCTCGGCCCGGTCCATGCGGGGGGGCTCGGTGGTCGCCGGGGTCATCCGAAGACCTCCACGAGTCGGTGTGTCACCGGTTCCCGGAGGAGGCGCCGGCGCCGGAGGTGGTGGTTCCAGGTCTTGCTGTCGCAGCGCTGGGGGATGCCGTCGCCCGGGTCGACGTCGACCGTCCCGCCGAGGCCGAGGTGGATCTCCTGGGTGAGGACGGCGGCGAGGTCGTCGGCGTCGTGGACCGGGTCCAGGCCGTGGGCGGTGCGCTGGTGGTCGACCCGGGCGCGGGTCGCGGCGGTGCGGACCTCCAGGGCGAGGTGGGAGAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTACCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTACCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //