Array 1 3-972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDJ01000109.1 Mycobacterium tuberculosis strain Bir 98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================================================================================== ================== 3 34 100.0 100 .................................. TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCCCCCGAGAGGGGACGGAAACTTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGG 137 34 100.0 27 .................................. CTTGAATAACGCGCAGTGAATTTCGCG Deletion [198] 198 34 94.1 37 GA................................ CCTCGGAATCCCATGTGCTGACAGCGGATTCGCATGT 269 34 100.0 39 .................................. CTTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAGGT 342 34 100.0 42 .................................. CTGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAGGT 418 34 100.0 40 .................................. CCGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGCGT 492 34 100.0 42 .................................. CCAACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGGGT 568 34 100.0 37 .................................. CCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGTGT 639 33 97.1 43 ..........................-....... CAGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGG 715 34 100.0 40 .................................. CCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGTGT 789 33 97.1 43 ..........................-....... CCATATCGCCCGCCACACCACAGCCGAGTGACATCCTCCCAGT 865 34 97.1 40 ................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGAGT 939 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================================================================================== ================== 13 34 98.9 44 CGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GTC # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 21414-21882 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDJ01000060.1 Mycobacterium tuberculosis strain Bir 98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 21414 36 100.0 37 .................................... CCAGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 21487 35 97.2 38 ............................-....... CCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 21560 35 97.2 36 ............................-....... CGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 21631 36 100.0 36 .................................... CTTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA 21703 36 100.0 36 .................................... CGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 21775 36 100.0 36 .................................... GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG 21847 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 99.2 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //