Array 1 219733-221407 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGI01000008.1 Salmonella enterica subsp. enterica serovar Muenster strain 07-0237 NODE_8_length_221583_cov_4.36637, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219733 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 219794 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 219855 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 219916 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 219977 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 220038 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 220099 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 220160 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 220221 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 220282 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 220343 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 220404 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 220465 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 220526 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 220587 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 220648 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 220709 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 220770 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 220831 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 220892 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 220953 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 221014 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 221075 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 221136 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 221197 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 221258 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 221319 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 221380 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107237-103668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYGI01000016.1 Salmonella enterica subsp. enterica serovar Muenster strain 07-0237 NODE_16_length_123786_cov_4.08592, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107236 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 107175 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 107114 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 107053 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 106992 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 106931 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 106870 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 106809 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 106748 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 106687 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 106626 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 106564 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 106503 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 106442 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 106381 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 106320 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 106259 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 106198 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 106137 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 106076 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 106015 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 105954 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 105893 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 105832 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 105771 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 105710 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 105649 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 105588 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 105527 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 105466 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 105405 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 105343 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 105282 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 105221 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 105160 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 105099 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 105038 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 104977 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 104916 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 104855 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 104794 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 104733 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 104672 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 104611 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 104550 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 104488 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 104427 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 104366 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 104305 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 104244 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 104183 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 104122 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 104061 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 104000 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 103939 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 103878 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 103817 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 103756 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 103695 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //