Array 1 135640-142870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEEL01000002.1 Streptococcus suis strain LS5Y, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 135640 36 100.0 30 .................................... AACTGCTGGATAGTTTGGAACTTCTTGCGC 135706 36 100.0 30 .................................... AGGTGGTATGTACCTATTTAATTTCAACCG 135772 36 100.0 30 .................................... GTTCTTCAAAGAATTGTCTTTGTTGTTCGC 135838 36 100.0 30 .................................... TCCAACACGCACAGACATATTAGAATCATG 135904 36 100.0 30 .................................... GATTCTCGATACGGTATTCATTTCGTTGTT 135970 36 100.0 30 .................................... TATAGAATGTACATACTTTATAAATGATAT 136036 36 100.0 30 .................................... AGCTTTAGGTCTTGTTATTTTCGGCTTGAT 136102 36 100.0 30 .................................... TAAAGGTCTGAAATCCGTCAGTGATGCTAT 136168 36 100.0 30 .................................... GAAAGTTGCTGATAGTTGGACTGGTCTAAA 136234 36 100.0 31 .................................... TCAAGGTCAGCGGCTACTGCTCAAGGGGTAG 136301 36 100.0 31 .................................... CATTTTCCGAGGCTCTCGCATTATCAAATAA 136368 36 100.0 30 .................................... GCTTCCAACTGCTCCACCAGCTACCAGCTC 136434 36 100.0 30 .................................... CAAAGTACACCAGCGCCAGCGAAGCCTTGA 136500 36 100.0 30 .................................... AAAAATGTATGACAAGCCAGTAGTTTATGA 136566 36 100.0 30 .................................... ATTGACTAAGCTTCTCGATTTTATCCGTGA 136632 36 100.0 30 .................................... CAAATGGATATTACCTGCCTAAGTCAGAGC 136698 36 100.0 30 .................................... GGCTTCTATGGTTTTACTGATAAAGCAGGT 136764 36 100.0 30 .................................... AAGGACAGAATACTTTGTCATCCTCGGCTC 136830 36 100.0 30 .................................... CAATCCTCCGCCTTGCATGGTTCGGATGGT 136896 36 100.0 30 .................................... TTGCGCTGGTGTATCTTCTGGCATAACGGC 136962 36 100.0 30 .................................... AGTACCAAACTACCCAGCCGTTGAACCTGC 137028 36 100.0 30 .................................... GCGCAAGCAATGTCAGAGGATTAACTCCTC 137094 36 100.0 30 .................................... CAAGACACAATCTTCTATTACATTAGACTT 137160 36 100.0 30 .................................... CAACTCTCCTCCTTCGACTTGTTTGGCTAC 137226 36 100.0 30 .................................... TCCGCTTCTAATATTGGTGGTGATTATAAC 137292 36 100.0 30 .................................... CGTTTGGCAACGATATTGTCCACGTTGTCC 137358 36 100.0 30 .................................... AACTACCACCCCCAACACGTGTGACGACTG 137424 36 100.0 30 .................................... CATGGGTGAAAACTTTATCGCTTGGCATTC 137490 36 100.0 30 .................................... CTATCGTCAAAGAAGATACTATTAATCCTA 137556 36 100.0 30 .................................... GACTACGAACGATTTTCGAACGCATCTCCT 137622 36 100.0 30 .................................... ACGGATAGTGCAGGGAACCGCATTAGCTTG 137688 36 100.0 30 .................................... CGTAAATATATGGATCCGTTAAACGGTTCT 137754 36 100.0 30 .................................... TTTAGCAAGTACCTTACGGGTTGCCGCCCT 137820 36 100.0 30 .................................... GATTCTTTCAAATCGTTGCCCAAATCATTT 137886 36 100.0 30 .................................... AACGACTTTCGCCCCTTATCATACAAGGAA 137952 36 100.0 30 .................................... GAGAAGCCAGTGAGCGAAAAAACGGTCCGC 138018 36 100.0 30 .................................... AAGATTTAGTTGAGCAGTATATTTCCCTGT 138084 36 100.0 30 .................................... CGACCAGGCAGACAAACCACCAATAGTGAC 138150 36 100.0 30 .................................... TTTGCTGAGACCAACAAGATCGCGACCAGT 138216 36 100.0 30 .................................... GCATCGGTTTCTACAAAGGTCGTTTCTCTA 138282 36 100.0 30 .................................... GCGAGCCACAACGCCAGCAGCAACCACAGC 138348 36 100.0 30 .................................... GCGGCTCGGTGTTGATGATGTTGGTCTGTT 138414 36 100.0 29 .................................... TGTGCATAAATCAACCGTTGCCATTCAAT 138479 36 100.0 30 .................................... AAGCAAAGAAGACGGAGACCTTTCTTTCAA 138545 36 100.0 30 .................................... CATGAACGCACTTCAAGCCGTTTTCCAGTC 138611 36 100.0 30 .................................... TTCTTCGTAGCAAGAGCGAGTGAGTTCATA 138677 36 100.0 30 .................................... GGGTCAAAGGGTGCGATTTCGTGGACCCGT 138743 36 100.0 30 .................................... TGTCCGAGAGTGTAGATGCGTTCTCGATTT 138809 36 100.0 30 .................................... TAGTAGAAACTAGAAACATAAAAGAAGCCA 138875 36 100.0 30 .................................... TAAAAAATCAAGTGGTAAATGCTGTCTTAT 138941 36 100.0 30 .................................... TACTATCGCAGATGCTACAAACTACGCTAT 139007 36 100.0 30 .................................... AAAACGGACATCGTCAGCAGTTGATGGGCG 139073 36 100.0 30 .................................... TGCTTTTGGTGGAACAATTCAAGTTGTTGA 139139 36 100.0 30 .................................... GTAACTCAAGAACAACTCAATGAATTGTGT 139205 36 100.0 30 .................................... TCTTTCAGAAGATGACGACATCAGGACTAT 139271 36 100.0 30 .................................... TGCAAGAATAAATTGTGTCAGATGTGCAAT 139337 36 100.0 30 .................................... AAGGAGAACACTTATGTCATTCTTTCAAAG 139403 36 100.0 30 .................................... ACTATTTAGATGTTCCTATGGAAGAACTTT 139469 36 100.0 30 .................................... CGTGAAAGTACCAGATGCCGGACCATTGTC 139535 36 100.0 30 .................................... AAGGAGGGATATGCCCATGCTTTACTCTAT 139601 36 100.0 30 .................................... ACGCCGGTCGCAACGATGAGGCTAAAGAGC 139667 36 100.0 30 .................................... CTCTTTTGAAACATTAGCTACACTACTCTT 139733 36 100.0 30 .................................... CCAAGCTGAGTTTAGAAAGTGGTTGAAAAT 139799 36 100.0 30 .................................... CTGAAAACGAATTGACTCGAGATGCCATCA 139865 36 100.0 30 .................................... AAGGGTATAGTGTTTCTTATCGTCCGTCAT 139931 36 100.0 30 .................................... GGATTTGTAAAATGTGTTTGACATATGTCT 139997 36 100.0 30 .................................... CACAATGGCTGGTTCTTTGAAGATTCTAGA 140063 36 100.0 30 .................................... GCTTCCAACTGCTCCACCAGCTACTAGCTC 140129 36 100.0 30 .................................... AATGGTCTACCCAACTTCTTCTCTTCGACA 140195 36 100.0 29 .................................... CGTTTTATTCTTTTGTTCAGGGATCACTG 140260 36 100.0 30 .................................... TAGCAACATTCAGCAACATGGCAGAAGCCA 140326 36 100.0 30 .................................... TCGAACGTTCCAGTTCATCTACCTTGATAA 140392 36 100.0 30 .................................... TGGAAATGCACGGATGCTGAGCAGGGCATA 140458 36 100.0 30 .................................... AGAGTCAAAGAATTCTATTGGACAAGGGAA 140524 36 100.0 30 .................................... TTCACCCAGACAGAGACAGGTAGAGAGCTT 140590 36 100.0 30 .................................... TAAAGTGATGACTGATGTAGCCATGAAAGG 140656 36 100.0 30 .................................... AGATTTCGCTAATGAGCATGACTTGAAAAT 140722 36 100.0 30 .................................... CTTAGCAAGAGGTATGGTATCGTTCTGTCT 140788 36 100.0 30 .................................... TTTGCTGATGTTCGTTTCTGGATATGTTGT 140854 36 100.0 30 .................................... TGGCTATGCCACATTCACAGAAACCATTGC 140920 36 100.0 30 .................................... AACATATCCTTCGTATAAATCCATTTGTTT 140986 36 100.0 30 .................................... AAAGGCAAGTGACACCATTTGGACTATCTG 141052 36 100.0 31 .................................... CAGCCCTGGCGGACTTATCGACCCCGCACAA 141119 36 100.0 30 .................................... GAATGCAGAGGGAAACATTTGCATAGATAA 141185 36 100.0 30 .................................... AAAAATACCCACAGTTTCGGTGGGTAGCGT 141251 36 100.0 30 .................................... CCGGGCTTTGCTTGAAAAACAGCACGAGCC 141317 36 100.0 30 .................................... AGCTTTGCCGACAGCTCCTCTCGCCCAATC 141383 36 100.0 30 .................................... TTCGTCTTCGTCCATCTCCCAGATGTTAAT 141449 36 100.0 30 .................................... AACCTGGAAGTTCTTATCATCATGCACGTT 141515 36 100.0 30 .................................... TAAAGAAGTGCTAAAAGGAAATCTAGGCAA 141581 36 100.0 30 .................................... AAAGTTCGGCAGTATTGACGCATTCTGGCT 141647 36 100.0 30 .................................... CCGTTGACAAAAAAGAAAGACTTGTCACAG 141713 36 100.0 30 .................................... GCCTGTATTTGGCGTTATGCGAATCCATAG 141779 36 100.0 30 .................................... AATGTAATTGCGCTTTTTCTTCTGCCTGTA 141845 36 100.0 30 .................................... GCCTGTATTTGGCGTTATGCGAATCCATAG 141911 36 100.0 30 .................................... GCAGATTACTGGAACCACATACATTCAAGA 141977 36 97.2 30 ................A................... ACAAAATAGCAAAAACCCTCAGCGATTTGC 142043 36 100.0 30 .................................... TGGTAGCAGAGGACTTAAAGTCCATATTAG 142109 36 100.0 30 .................................... CAGAAACGCTCGTATAGCTCCGCTGACAGT 142175 36 100.0 30 .................................... TGGGCGAGGCGAATATGAGGCGTGTGACGA 142241 36 100.0 30 .................................... AAATTCTTTGTGCAATGTCCCGTCTTTCTT 142307 36 100.0 30 .................................... AGGTCATTACAGACCTAAAACTCGAGTTAG 142373 36 100.0 30 .................................... CCGGTGCAAGCGCTTGGACAATCTGAACTA 142439 36 100.0 30 .................................... CCCCTACTCTGTTAAGAATGAAATCAAACA 142505 36 100.0 30 .................................... TGTCGCAGGGTATATTGTGACAACTCCCAT 142571 36 100.0 30 .................................... CAGAAACTTTATCAGTAATGCTATTTCGGT 142637 36 100.0 30 .................................... AAAAACATTTCTAAACAATACACTAAAGAA 142703 36 100.0 30 .................................... ATTTGACGATGATGATAGATTACTCCACTA 142769 36 100.0 30 .................................... CTGCCCCAGATTGACCTCTAGCGTGTAGAG 142835 35 88.9 0 .........................A.-.A.....G | T [142868] ========== ====== ====== ====== ==================================== =============================== ================== 110 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACCTGCATTTATATCATTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAGGGCTTGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //