Array 1 106987-106698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDH010000001.1 Clostridium botulinum strain KM71 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 106986 30 100.0 34 .............................. TCATCACATACGTTAAATATATTTTTAACTACCT 106922 30 100.0 35 .............................. ACTTTAGTTCTAAATGTTTCGCTTGTTTTGTAGAA 106857 30 100.0 35 .............................. GCTAATGAGATTCCAAGAGTTAACGATACATCTAA 106792 30 100.0 35 .............................. ACTTATTTGTATGCCTTTATTTGGGATTGTAGATT 106727 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 5 30 100.0 35 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : GTCGGTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTGAGTTTTTACTTTGGATTTTTTTTATTTTAGAAGAATAAAATAAAATACAATATTGATTAGATATTTTAGATAATAAAACAATAGCAATAAAAATGGGATTAACAGAAGAAATAGATGCTCTTAGAAAAAAGAAGGTAATTAGTATTTTTTAGAAACACTTAGAATTTAATTATCTTAGTTTTTTTTCTGTACAATTCTATTAAAGTGTATAATTTAAATAGAATAGTAAATATTCTATTTTACCAGCCATAAATTTATATAAAATCCCTTAATCCATTGAAATTACTGGGCTAAGGTTGCCATTGAAAATTTTTATTGAAATTTCACAAACGGTTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTATTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : AGAGCATTAGATAGTATTTTTATTGCCTTTGGAGAAGGCTTAACATTAAAACATCCTTATAGCTATAACTTAGTTTTGTAGCTATAAGGATGTTTTTTTACTCTTAATAATGTAACAAAATATGTTATACTTGAAAAAAACAAATTGTAATTTGCATGGGAGAATACAAAAATGAGCAAATTGACTAAATATATTGAAGATTTAAGAAAAAAGTATGGGGATGCAATAGTAACAAAAGAAAGTCATTATGATGATATGATGCTTTTAAAGGTACCTGAGCCATTGAGGGAATTTTATAGGGAATATGAAAGTTTAGAAATGCCTTTTGGAATTATTGACTCTATCGAAATCAGTATAAGATCTTCAGAAGCAGAACCCTTTAAAAGTGAAGGCTGGTTTTCATTTGGTGCAGATAGATATTTTTCCTTCTGGCTATGTGCTTATAAGGAAGATAATTATGGTAATTCCATTATTTCATGGGATCACGATATAGATGATGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22880-23636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBDH010000004.1 Clostridium botulinum strain KM71 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22880 30 93.3 36 ................AT............ GTGGCAACTCTTCCTCAATATTTGTTTTTGCTTCGA 22946 30 93.3 36 ................AT............ TGTTGATTGATTTAGCGGACGAGTTGGGGGACGATA 23012 30 100.0 37 .............................. GCAGCGTGTGCTGGAATACTTAATGTAGCTGGAACAG 23079 30 100.0 36 .............................. TATAGAAGCTTTTAAAAATTCTACTAGTAAAGCTGT 23145 30 100.0 35 .............................. GAAGGTTTTAAATTATTTTCAAGTGCTTTACGATT 23210 30 100.0 36 .............................. TCAAACACTTGGAGTTTTTACAGATACTATAATAAT 23276 30 100.0 37 .............................. TAAAGTTACTTCTTGTAAATTTAAGCAACATAAATAC 23343 30 100.0 36 .............................. ACAAGTCTATAAAGTAATAATTCTTTTGGTTTTCCT 23409 30 100.0 36 .............................. TCATATTGATTAATTCATTCCTGCTATACCCTGTTT 23475 30 100.0 35 .............................. TCTATAAAAGTTTCAAATTTAGACTCTATACCTCT 23540 30 100.0 37 .............................. ATCCTAAGTATAGTAGTATAGTCCCCTCTCTAAACAG 23607 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.9 36 GATTAACATTAACATGGGATGTATTTAAAT # Left flank : AGACAGTGCAGAAGATATATTTAATAAAGTTAATGATTATATTTTAGACGGAATGCCATGCGATAGAGTAAATGAAATTATAAATAGCAATGAAAATTGTGTGAAATGGACTAGAAGAATTTGTGTACATAAAGAAATTTGGGATAAAGAAAGTGGAGATGTAGAGTACTTTTATTTCCTAAGGAGTTTATGGATTAAAGCTTTTGTAAATGAAATAAATACTGAATTTGATTATTTAGAAGACAGTAAAGGGGTAAAATCTATAAGAAGAAAATAAAGATTTTTATAAAAATATACATTTGTAATTTAAGACAAGCTTTATTATTTTACCAGGCAATTATTTTAATGAAATCCTATTAAACCTAGATAAATACAAGGATTATATATAATAGAATAGGTTGTTATCAATATTATAAAATCACTTGGTAAAATAGTAATAATATGTTACTATTACTGTATTAGAGCGATTTTATTATTTTAAGAATGGCTTATTTTCAATG # Right flank : TCCATAATATACTGGTGTTGTTATGAAGAATAAGCCTAACCTAAATTTTAGATTGGGCTAAATATTACTAAATAGAATAAAACATTAATTAAAAATATTTTTATCAAACATTTCTATAAAATTACATGAAATATTTGATAGAGGTTTATTTTTAGGCCATATTAATCTTAGATATGACTCAATTGATGGTTCTATTATCTTTTTTATCTTTAGATTAACATTGGGTAAGATATTAGAAGCAGTAAGTGGTAAAATAGAAATTCCAATTCCAGCTTCAGCCCAACTTAAAGAGGTAATAATATCATCATTCTTACATATTATATGTGGTTCAAAGCCTGCCTTATTACAAGCATTTTTTATAACATCATCGTATCTTCTATTAATTATTAATGGCTTATCTTTTAATTCGTTAATGAGAATAGTGTTACTTTCTATAGAATTATAGAATTTAGATTTTGCAATTGTAACAAAATAGTCATTTAAATTATTTTCAAGGTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //