Array 1 668231-668022 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOI01000001.1 Zymomonas mobilis strain DSM 12494 Ga0314522_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 668230 28 89.3 32 TA.A........................ CATAAAATTTATCTATGATGCCTATGATACTG 668170 28 96.4 32 ............G............... ATTAAAGGAAACCCATTTTCCCGCCTTGTCTT 668110 28 100.0 33 ............................ CTTGATGGAAGTTTACGGGATTACAATACAGTC 668049 28 82.1 0 ..........C..........C.CC..C | ========== ====== ====== ====== ============================ ================================= ================== 4 28 91.9 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAGAAAACAACACAGAATTTTCTAATAAAGTACAGGTTACACCAAATTCTAATGATAAAAAAGTAGAATCTTCACCATGGGTTTATAGTGAAGGCAAAGATGAAATGCGTGGAACCACCTCTTATTTTGCATCAATCACCAGCCTAAACAATGTATATTTCCCATTTCCTTATGATACATCATATGCTCATGTAATGATTAGAAGAAGACCTAAAGATGGATTGAATATACTATTTTCAGTAGATTCAGGGCAAATACTCTGTCATTCTTTCTCAAGGAGTTTTTTTTCAGTAAAATTTGATGATAAACCCATTCAAAAATTTAAATGTTCAAGTTCTGATTCAGGTAGATCTGATATATCTTTTATTGAATCTGCAACCTCATTTTTGAAACAAATAAAAAATTCTAAAAAAATGATTATAGAAGCGCCATTTTATGAATCTGGCAACCAACAATTTACATTTAATACAAAAGATTTAAAATTTGATTGAATAGGATT # Right flank : ATAAAAGCATTTAAAAACAACCACTTAACTACCAATATATTATACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAAGGCAAATGGCCTCACCCTGCCGACATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTCCCACTATCCCGATAATTCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCGCTATATTACGTCTTCACAGGCTGGCGATATGGCCAAAACACAGTCCATAAGCCATCCGTCTGTTCACGACCTCC # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1375614-1376007 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOI01000001.1 Zymomonas mobilis strain DSM 12494 Ga0314522_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1375614 28 100.0 32 ............................ TATTTCAGGTGTCGCAGAACGTCCGGCAGTCG 1375674 28 100.0 32 ............................ ATATTGTTCGCTTCAAATAAGCGGATAGGTAA 1375734 28 100.0 33 ............................ ATTTTACAGATTGATGTGAAGTTAAACTTGCAA 1375795 28 100.0 33 ............................ TTTAATCCTATGCCGACCGGTCCTACACCAAGA 1375856 28 100.0 32 ............................ AGCGACAGGCTACCGGCCACCAGCGACAGGCT 1375916 28 100.0 33 ............................ TGACCACGGAAGACTTGGCGCGTGGATAAATCT 1375977 28 89.3 0 ............G.............TT | GTT [1375996] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAGACACCGCCGTATATTTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCTGCCTTTGTAAGCTGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAACGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTATCTTTTATTGGGGTTTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCGAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGAGTGACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATAGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1702177-1702686 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOI01000001.1 Zymomonas mobilis strain DSM 12494 Ga0314522_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1702177 28 100.0 32 ............................ ACCGCTTAAACTCCCTTGGATAATCGTCTGAA 1702237 28 100.0 32 ............................ AAAACGGGGTAGTTTTACCCCGCTCCTTAAAA 1702297 28 100.0 32 ............................ GTAAAAGTCTGGTCACCAACATGGTCAACCGT 1702357 28 100.0 32 ............................ GCATCGAGATCATGTAACCGGTCAGCCAAATC 1702417 28 100.0 33 ............................ CTGAAGGGATGGTCGGCGACAGTGGCGCGACGA 1702478 28 100.0 33 ............................ ATAACAGAAAATGCAGATACGACCCCATCGCTT 1702539 28 100.0 33 ............................ CCCATGATGAGATTGCGCTTAAGCAAAATAGCT 1702600 28 100.0 32 ............................ ATATCCCAGCCTGATCCGGCTCCATCATTCCC 1702660 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGATGCAGCCGGACAGGGCGGCCCTGACTATCGCATACAGCGTGAAGCTTTGAGTTCAGTCCGCCTTTCGTGCGTCCGATATGGCGGGGAAAAGCCCCTTTTTGAGCAGGGAGGCCGCTGTCCGGTGTGCTTTCAGATGTGTTGCATCGATCATCAGACGCTTCGAACGGCCTGCCTGCTCCGTCAGGGCGACGAAGATCCGGTCAAAGACACCCAGGCGGCTCCACCGGATAAACCGGTTGTATAAAGTCTTGTGCGGGCCATACGCTTTCGGGGCGTCTTTCCACTGAAGGCCGTTGCGGATCACGTAAACGATCCCGCTCAGGACACGACGGTCATCGACACGCGGCACACCATGCGCCAGTGGAAAAAACGGCTTAATCCGTTCCATCTGGTGCTCAGACAGCAAAAACACGTCACTCACAGCTTCACCTCCATCGGTAAACCTGTGAATCACAACAGCCCGCTCAACTCAAGAAATTAACAGGTCCTGAGCCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGCTGTTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCGCCGGTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //