Array 1 8390-11591 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPD01000005.1 Streptococcus gordonii strain BCC62 D8811_contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8390 32 100.0 34 ................................ GATGACCTAGGCGGAACATACAAGACCAAAAAGG 8456 32 100.0 34 ................................ ACCTAACCTATTTACTGATAGTGAAGTTGTGCTC 8522 32 100.0 34 ................................ ATTGTTATCTGGAATAAACCGCTAAATTATAACA 8588 32 100.0 34 ................................ AGACCTTTATAATGGTAAACCATGGATAAAAACC 8654 32 100.0 36 ................................ AACCAGCACAAGAGGACGTACAAGGAAAAGCTCAAC 8722 32 100.0 33 ................................ TTACTACGTACCATGAACAAAAAGAACCATTCG 8787 32 100.0 35 ................................ ATAGGCCTGATGCTGTTCGTCCATTTGGTAGATCA 8854 32 100.0 33 ................................ AATGAAGTTATGCACAAAACAGGCGCTTACTAC 8919 32 100.0 34 ................................ GATGGACGACTTGGCCAAGAATACGATTGACGCA 8985 32 100.0 34 ................................ CAACAGCTCGTTTGCATCTTTGCGCGTATGGTCG 9051 32 100.0 35 ................................ ACGTTCGTGAACAAATAGCGTAGAAAGGAGCACAG 9118 32 100.0 35 ................................ AAATCATAACAAACACTATCAGCGGTACCTTTATT 9185 32 100.0 34 ................................ AAAAATGAGCTGACCAAGTATTGTGAGCCTACTG 9251 32 100.0 34 ................................ TCAAGTACTTGCCTACTTTTCGCAAGACTACCAC 9317 32 100.0 33 ................................ GCTATAAAAATATGGGGTTTATCTTTACGACAA 9382 32 100.0 34 ................................ ATGATTTTTTTAGGGGGGTTATCATTTAGTGAGC 9448 32 100.0 34 ................................ AGTTAAGAGCATAGAGTTACATAGGACGTTGTAG 9514 32 100.0 33 ................................ AGAGGGCTTGAGTATGAAGGTGGTATTATCCGA 9579 32 100.0 33 ................................ AACCTCATTGCCGTTGAAATAATCTAAAGGTAC 9644 32 100.0 34 ................................ TGGCTTCTGCTCAATCGGTCCAGCTTATAGACTA 9710 32 100.0 34 ................................ ACTGATGGACAGCGCTTTGCTTGCGCACTGGGCT 9776 32 100.0 34 ................................ ACTGATGGACAGCGCTTTGCTTGCGCACTGGGCT 9842 32 100.0 34 ................................ TAAAAATTTTAAATTTTTTATTTTTTCTCAAAAA 9908 32 100.0 33 ................................ ACGAAGCGCTTTATGGATTACTACACGCAGGAT 9973 32 100.0 35 ................................ ACGCTGAGTACGTGGATAGTATGGTGAAAGAGCTT 10040 32 100.0 34 ................................ AAACAACAAAGATTGTTTTATCAAAAAACCGAAT 10106 32 100.0 33 ................................ CAATGATAATGCATAATCAAAAATAAGATTCAA 10171 32 100.0 34 ................................ TGATTGCAAACCAATATGCAGCCATCTATGGATC 10237 32 100.0 34 ................................ GATAGATACCACTGATAAGAAATCTGGTAGATAC 10303 32 100.0 34 ................................ ATAATCACATACCAGATATTTAACATCTGGTTTT 10369 32 100.0 35 ................................ CCTAATTTAATTTTTTTTAAAAAAGTTGATAAAAA 10436 32 100.0 34 ................................ ACTTAATTCAATTTGTCCAAAACTTAACATGCTC 10502 32 100.0 34 ................................ AAAAATCGAAGATGATATTATTTTATAAAAAAGA 10568 32 100.0 34 ................................ CTGAAATACTAGATCCACAAGCTGATATAGATTA 10634 32 100.0 34 ................................ AGGCCGTCACTTTGCAACTGGTAACATTAACCTC 10700 32 96.9 34 ..................A............. ACTCACGTAATGATAATGTTGAGATGGTTGCTAA 10766 32 100.0 35 ................................ AATTTTAGGAAAGACCGTGGGGTTGTCAATATCTC 10833 32 100.0 34 ................................ ATAATCACATACCAGATATTTAACATCTGGTTTT 10899 32 100.0 34 ................................ AAAAATCGAAGATGATATTATTTTATAAAAAAGA 10965 32 100.0 34 ................................ AGGCCGTCACTTTGCAACTGGTAACATTAACCTC 11031 32 100.0 34 ................................ ACTCACGTAATGATAATGTTGAGATGGTTGCTAA 11097 32 100.0 35 ................................ AATTTTAGGAAAGACCGTGGGGTTGTCAATATCTC 11164 32 100.0 34 ................................ TTGTACCTATTTTATCAAATTTGAGGTACAAAAA 11230 32 100.0 35 ................................ AAGATCTTTTTCTGCAAACGTAAAAAAGGATCTAC 11297 32 100.0 35 ................................ TAAGAAAGTTACCTATAATATGGTATATCATAATG 11364 32 100.0 34 ................................ TAAATTGCACATTTACCTTTTTTTGCTGGTGAGT 11430 32 100.0 33 ................................ TCGGACATCCAAGACAAGCATACTCTTAGACTT 11495 32 96.9 33 .........C...................... TGCTCTGGTGATAGATCAATACTTGTAATTGAG 11560 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 99.8 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CAAGACAATCCGTGGTGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCTGATTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGAAGGAAAAGATTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGCCTAGAAACAATTGGACGAGATACAAGTTATGATCCTGATATAGGCGTACTACTCCTTTAAATGACTTAGTGCGAATAGTGGTTACTCATAAAAAAGTAGGGCATTCGCGCGAAAAACAAACAAAAATGAGGTGAAAATTCAAAAATAATGGAGGAGTTATCTCTCCTTGAAAAATAATTTTTACCTAAAACAGTGCAACTACGCGCT # Right flank : TTCAATGATTGATCGTGTAACTCGTCTATGCTATAAGGTCGCTCCCTTCATTGTGAAAATTTTTATGAACCCAAGATACATATTTATTATTTATATAATATATTTAGTTATGCTCCTTTATATATCCAAAACAACCACCTAAATAGGTGGTTGTTTTCATTTATCACTGCTTACTAGAAGAAGAACTTGAACTGCTTGAGCTGTCGCTACTGGATTCAGAACTGTCTTCTGAGGAGATGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATCAAAGAGGTCAATGGTCGATTCGCCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTATCCTTGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGAGTATTGGTAGCATTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //