Array 1 193073-189030 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973590.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 193072 36 100.0 35 .................................... TCAGTTCACCTGCTAAAAACGAGTTTAATTTGGGC 193001 36 100.0 34 .................................... GGCGGATGGAGTAGATTTAATACAAGAATTTACC 192931 36 100.0 36 .................................... ATGCTTTTACCAAGATTTATCAATCAATTTACGACG 192859 36 100.0 35 .................................... AATACAGACGAACTGCTTAAAGCGGCTAACGATCG 192788 36 100.0 36 .................................... ATGCAACAGGATCAGGTGCGGGTGCGGAGGCATTAA 192716 36 100.0 35 .................................... ACTCTTAACTATTTGTATGAAAGCCTGAACTGACA 192645 36 100.0 37 .................................... AACCTCCCCGACAAATTGACCAATATCTCGGTTATCA 192572 36 100.0 37 .................................... TACTTTATTTAGCCCTATACATATAGTATATTGTATT 192499 36 100.0 36 .................................... ATATGTAGTAGGTTGACATACCCAGAATAATACAAT 192427 36 100.0 35 .................................... AATGATAGCCGTTCTTATTTCGCGTTCTTTTAGAC 192356 36 100.0 37 .................................... GATAAGGCGGCTTTTGAGAAATTTACAGGCTTTAAAA 192283 36 100.0 34 .................................... AATCAGGGGACTAATAAACCCCAGAAGGTGATTT 192213 36 100.0 36 .................................... CTTTTGGCTGCATTGTAAAAGAAATCAAGTTCAAGC 192141 36 100.0 35 .................................... TATAGGGCTAAGATATAAAGTACATTATCTAGTCA 192070 36 100.0 35 .................................... AAGCTATCTACTCTCAAAAAAAAGCTATCTCAATT 191999 36 100.0 35 .................................... AGTTAGATTCAAGTTAGCGCTAACATTATTATTTA 191928 36 100.0 34 .................................... CCAGATTATAAGTAAAAGATTTAAAGGTGTGTGT 191858 36 100.0 36 .................................... TTGATACATTTGAATCCTTCGGATTTAAGCTAGAAA 191786 36 100.0 35 .................................... AAAGGTTCTCAGCCGATTGCTTCGGAGAGCAGTCT 191715 36 100.0 35 .................................... CTACTAGCGATCCTTTAAAGTATAAATTAGTGGAA 191644 36 100.0 35 .................................... AGATAAACACCAGCCACACCAATTAAAAGCATCCA 191573 36 100.0 33 .................................... ATAAGAAAACACCAACACCAGCTAACCCTGCGA 191504 36 100.0 35 .................................... TTGCCGATTATGGAGTTGCTGAGTAAGGAGGGGAT 191433 36 100.0 34 .................................... AAGCCCACTACGCCCAAAATGAAAATAGCAAGCG 191363 36 100.0 35 .................................... AAGCAAGGGAAGCAGATGGTCCACTTCCGCAAACC 191292 36 100.0 35 .................................... TTATTGATGTAAAATCCACGGTTGTTACTGCCAAT 191221 36 100.0 35 .................................... TACAGGAAGTCACCGCGATCCACTTCCTTCTAGCA 191150 36 100.0 38 .................................... TAGCCAAAAGAACAGGGGTAAGCTTAGATGCACTGGTA 191076 36 100.0 36 .................................... TCTCTTTTGGGTACAACGTCCTTAAGACAGTGCCTT 191004 36 100.0 34 .................................... GTAAAAAACTAAGTTCTAAGCAATTAGACAAACT 190934 36 100.0 37 .................................... CACTCGAATCAATGAATTTACCGCTAATACTCCGATC 190861 36 100.0 36 .................................... GAAAATTCGAAAGAATTACTCTCGGAATCAAAAGGG 190789 36 100.0 35 .................................... CTTGCATCGATAAAATTCCCCCGGAAGCTTTGGGG 190718 36 100.0 36 .................................... TATGGGGAATGCCAAGCAGAAAAAGCGATAAATCAC 190646 36 100.0 35 .................................... AGACTCGTTTAGCCGTTAAATTGAGCGATTCGCCG 190575 36 100.0 36 .................................... GTACGGTTGCCATAATTAAAGGATTGAATGTAAGTA 190503 36 100.0 37 .................................... TCACTGTGGCTGTAGCCGAATCTCGCTGGATGGTGGT 190430 36 100.0 38 .................................... GATTACTAATACCCAATCCAGAAAAAGGCTTTTATCAG 190356 36 100.0 35 .................................... AACCTCTCGCGTCTCATCCTGATCGTGGGTGATGC 190285 36 100.0 36 .................................... AAGCGCAATCCCCCTTCCCGGTGGCAAGATTTTGGC 190213 36 100.0 34 .................................... AATGCTGTTCAGGCTTCGGCAGGAGCCACAGTAG 190143 36 100.0 37 .................................... GGCTGGTGAAGCATTTAGGTCGATGCAGTATAAGGAT 190070 36 100.0 37 .................................... ACAAGGCTCCGGTAAAGGTGTGTGAGAAGTCGCGGCG 189997 36 100.0 36 .................................... TATCACAACAGTAGTTTTGTCCCGACTAAGGCAAAT 189925 36 100.0 34 .................................... ATTTTATATTCCTTAAGAGGGCAGTACCCCCAAC 189855 36 100.0 37 .................................... AAAGCTTTACAGAAGGCAATGAGACAAATTGGGTTAG 189782 36 100.0 36 .................................... CTAGTGGCCAAGGAAAATTCTTGGCATCCCGTTCGT 189710 36 100.0 37 .................................... CTTTATTTGGGCAATTCCCCATCAAGATTAAAATTGG 189637 36 100.0 36 .................................... CTCCTGGTTCCGCAGGAGTTACCAGCCAGCAAATTA 189565 36 100.0 34 .................................... TATTAAAATCACCGACACGGGACGGCATTTGTAC 189495 36 100.0 35 .................................... AAAGTTTTGCACAAACTTATTCCCCTGAAAATTTT 189424 36 100.0 35 .................................... AATCTTTTTAGGGGCAGAGGTGGCACTGGTAACGC 189353 36 100.0 38 .................................... CATCTGTGTTTCGCCTGTCGCCAGCTTGAGAAAAAATA 189279 36 100.0 36 .................................... GGATTTATTACTACGCCGGACACGGATGTTTATGCA 189207 36 100.0 35 .................................... AATCACTTTTGTTTGCAATTTACGATCGGTTTATT 189136 36 100.0 35 .................................... AGAGGCTAGTCGCAAAAGTATTTCAATCTTTTCTA 189065 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 57 36 100.0 36 GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Left flank : GTCCGCAACGCTGGCGTAAAGCTTACAAAATTTTAGGCGGTTACGGCGATCGCATTCAATACTCGATTTTTCGCTGTTGGTTAAGTGCGCGAATGCGAGAAAAATTGCGCTGGGAATTGGAAAAAGTCCTCACCCCAAAAGACGACTTAATTTTAATTCGTCTGTCGGAGCAGTGTGTGCGCGATCTGCCTAAGTACAACCGTCCTAACACTTGGCTTTTGGACGAAAAAGGGTTTCGGGTAATCTAAAAAAAACAAGCATCTCTGGCTGGGAAAAAATCCACGGGCTAAAATTTATTTGTATTGCTAATGCTGTCTCGGTTTCAGGGTTTGACAAGGAACAATTCCTGCTTGCATTTTCTAAAAATCTCACTGGATAACGGTTTTCAGATTCGGTGCTGTCACTCAAAAGCTCTGATCAGAAGATTTCTTGGCGTTTTTCTAGAGGTGCTTGTAAAATGGACTGTGAAGCTATACACCAAAGGCTTTTTCAGCCTCGCC # Right flank : AAAGACACCCTACTGAACTGTTTCAGCTAAAATAGAGCAATAAATTTGAGCTTAAAGTCTTAGATTATAGAATTTATAGCATTTTTCTAATACACCAAATTAGCTGAAACAATCCACTACAAGAAATTAAGTTTATTACCCCTTCGGTGTGATAAAGTGGGAAGCGGAGATAGACGATAGAGTTGCTCATTTGTAGGGGCTGACCGATGAGGAAATAAAGATTATTAGGGGGGAGTAAATCATGAGTACAGAAGAGGAAATTCTCAATCAAATAGCAAACTTCACTTCCACGGAATGGAATATGTGGAAAAAACAACAAGAACAGAAATCATTACACAGGTTGTCTTTTCCAGGCTTCCATCGATTTTCAAATAAAAACTTTCAATATTTTGATTTCTCTAAAATAGATTTTCCTTCTAATGAAATATGGAACTGTGATTTCAGTAACACTAATTTAATTGAAGCCACCTTAAAATCTACTAAAATTTATCAAACCGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTAACCTTTGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 288260-289319 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973594.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 288260 35 100.0 45 ................................... GAAGATATCGTTGCCGACCCCGGCTTGAAGCAGGATTTTCACCTG 288340 35 100.0 33 ................................... AGTGGTGCTGGAACCGGAAACCGGTCCATAAAA 288408 35 100.0 41 ................................... GCTGCGCCGGATACTGGACCCCACAACAGTCCCAAGGGACC 288484 35 100.0 35 ................................... GCCCCTTCGGCCACAATCTCCTTTTTCTCATAAGT 288554 35 100.0 37 ................................... CTTCCTAACACACCGTTATCCTCCAAGTTATCCCAGA 288626 35 100.0 38 ................................... GAAATCTTTGGTTTCTGCAAAGAAACTTACAAAGAAAC 288699 35 100.0 37 ................................... TTTGAATAACGACTTCCTTGGCGGCTTCCAGCGGAAT 288771 35 100.0 43 ................................... GGTGACGTATGCGGCTGGGCCCAATGTCCACCACAGCCATAAG 288849 35 100.0 39 ................................... AGGTAGTTCCCCTTCAAGACGTACACCCAATTTCTTAGG 288923 35 100.0 36 ................................... CCTGATGGTGACCTGTAGCTGCACAGTGACAGGAGC 288994 35 100.0 36 ................................... CCAAGGATCCCAAGAATCACAAGGATTCCAAAAATT 289065 35 100.0 37 ................................... CCAAAAGGATTTTGAATCGCATCTGGCACATCAAAAG 289137 35 100.0 39 ................................... AACAAACAGTTTTTGCCCAATCAAAGGATCGATGCCATC 289211 35 100.0 39 ................................... GATGTGTAGGGTTAATTCATGAATTGACCCTACAATTTT 289285 35 80.0 0 T..AA........AA.T......C........... | ========== ====== ====== ====== =================================== ============================================= ================== 15 35 98.7 38 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : AGGAGGAGGTGTATATTGGTAGCGCCGATTGGATGACGCGGAACCTGAGTCGTCGCGTGGAAGCAGTGACACCCATCGATGAACCAGCGATCGCCAAGGAACTGGAAGAAATTCTCGGCATCATGTTGTCAGATAACCGACAAGCATGGGAATTACAATCCGATGGCAGTTATATTCAGCGTCGTGCTGACAATGAGGGACAGGAAAGCAGTACCCATGTAATTTTAATGGACAAAGCCCTTAAATCTGCGGGTATTAGTCCATAGGAACAGTGATCAGTTATTAGTTATTAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGTAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGAAAATTATTATTAATAATGTCTATGCTTTTCAGTATCCCACGAAAAATCGTTGTACAATCGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : CAGAATGCCAGGGATCAATCCCATCTCATCGGTTAAGAAAAATCCGAGATTTCAGCGAGATTATGCGTCAGTGGGGACAACAATTTCAGAGGAACTTTAACCAGACTGAACTCGGCAGAATAATTTATGCGGGAGGAGATGATTTTTTAGGCATCGTTTATAATAGCCAATTTCCTGATCCACAACTCGACTCGATCGAGATCGATCGAGTTTTCCACTGGCTACAAACCCCTCATAAGTAGGGTTTGCTGAATAAATGTGAAATGTAGGCAAGGTCAGGGTTTTGTGGCTTTTCTCGTGAAACAGGTGCAAGATTTTGAGAGAATCGTGCTTCAAAACCTTGCGTCTTCATCGGCCCGCGTCCTGTAGGGGCGAAGCATTCGGGCAGTAACCTATCGGTGAAACCGTAGATTTTCTATCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 290236-291084 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973594.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 290236 35 100.0 40 ................................... CCACCCCCAAGGGAACATTTTAATCATGTAACTAAGGTAT 290311 35 100.0 38 ................................... CGTAACGAAACTCACCAATATCATCTACGATATCTAGA 290384 35 100.0 40 ................................... CGTGGGGTCGGGGGAGCGATGGGCTCTGGAGGCTCTGCTT 290459 35 100.0 41 ................................... GGGGTGAGTTCGGTGAACCCAATTTCCTCGGCCAGGGACTT 290535 35 100.0 40 ................................... GATATTGAGACCCGACTTAGGAGTGTTATTTGCACTCCTT 290610 35 100.0 36 ................................... ATCACGGATAGTTTGCAGAAATTCACGAGCGACAAG 290681 35 100.0 36 ................................... GAACATTCCCCATACCAGAAACAGAGACTCGCGCCT 290752 35 100.0 42 ................................... ACCAAGGGGTGCGATTAAAATTGAGGCCAGAACCAAGGCACG 290829 35 100.0 40 ................................... CATCTGGGCAGCCTTTTTTATTCTCTTTCACAGGTTATGC 290904 35 100.0 37 ................................... CCTCCGAAGTCGATCACATCCCCTGGATTAATCTCCC 290976 35 97.1 39 ..................................T AATGTGTAGGGTTAATTCATGAATTGACCCTACAATTTT 291050 35 77.1 0 T..AA........AA.T......C.....A..... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 97.8 39 CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Left flank : ATCCGAATGCTTCGCCCGTACTTTTTCAGCAAACCCTAAGTAGCGATCGCACTTTCAAAAGACCAAATAATCACATTTAAAGGATTTTGCTTTAAATCTTTTCATAAGTAGGTAGGCGTTAAAAGCTGTCAGATCCCCCCCTTATTAAGGGGGGGATTTAAGGGGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATAACCAGCTACTTATCAGTTATCGGTTATCAACATTTTTCGCGGGTTAGACACAATGGCTGAAAATCTAGAGTTTTCGTTGAGGTGCGTCGATGCCTTGTCCAGCAAGGCTTTGAGCCTGATGACCGAGGTGACTATTGCGAATTATTATTAATAATGTCTATGCTTTTCAGTATCCCACGAAAAATCGTTGTACAATCCTTGTACAGCCTAGCTTTGCAAAGCTAGT # Right flank : CGATACTTAATTAAGAAAAATCAATGAAAATAAAGATTGTTTAAGAAAAATTATTTAAAATTAACACAATAATTAGAAATTTAGTGATAGATATAAAAGTACAAAAGAGCCAATTAATCTAACAATCCTATTTTTTTAGCCAGAGATAAGTCTTTTCTAGGCCTTTTCAAGGCTGTTGAATATACCTCTTCAACAATCGAGTTTTCTATAGCTTTATGTCCAAATATATAGCCATCACCTTCTCCCCCGTCCAAAGCTTTATTGAAAAATCCCGCAAATTGAGGGACCTGTACGGAGCCTCTCAGATTCTCTCGGATCTGACCAGTACAATCGTCACCCACCGGCCCGAGCAGTACCACCTAATTAGCCCCGGACTGCTAAACTCCCAACAGGGAATGCCCAACCGTGTTCTCCTGAAAGTCGATAGCGAAATACAGTCCTCCTCCTCCGAGGACATCATTGCGGAACTGCAACGAGCCTTTTTAAATCGTTGGAAAAAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCTTCCAATTCGTGAAGCGTATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 32800-33566 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973605.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 32800 35 97.1 37 ......................G............ GTCCGAAGATTTCGGATTGTTCTGGGGGTATTAACAT 32872 35 100.0 36 ................................... CCCTATAATCACGCAGAGCGTGATAAAGGACAATTT 32943 35 100.0 37 ................................... ACCATGCTTCTTTTCATCTTGTCCTTCCAGTCCCAGT 33015 35 100.0 36 ................................... TAAGCTCCTTCAGCCCAATTAAATTTCCCATCCCGA 33086 35 100.0 37 ................................... TCTTGAGGGTCTTTGGTTGGTTTCAACCAAACAAACT 33158 35 100.0 38 ................................... ACCCACACCGTGGTATTTACAGGCACTGGTGCTAGAAA 33231 35 100.0 36 ................................... ATAATCACGTCCTTCCCCTTTTTTTGGGGAGAAAAT 33302 35 100.0 37 ................................... AACTGCAAGTTGGCGGTCAAAGTCGGGCATTGAATTC 33374 35 100.0 39 ................................... GCTGCTGCTGCTCTAAAGCAGTATTAAGCCGCTCCAATT 33448 35 100.0 49 ................................... AAGAAAACAGGGAATTCAGAGATTTGACTTTTACGATATTCAATATCTG 33532 35 91.4 0 ................................GTG | ========== ====== ====== ====== =================================== ================================================= ================== 11 35 99.0 38 CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Left flank : TAATTTGCCAGTGAGTTTGGAGATATTCTCCAAATCTATTGAGAACTAAGTCGGAAAGCGCATCTGAGGCAAGAGTTAGCCCAAAAGTGCCGAATACCAAGAAAAATAATAAGCTTTTTCCAGGGTCGGCCAATCCTTGAACGAGACGATTATTCATAGAGATTCCTGAATCGTGTCAATTCTAGATTGACATTATATATTATCTGAGAACGGTGGATTTTTACCTGACTATTAACTATAATGGTGATCGCCACTGCACCTTGACAAATCTATAGAGTTTTCCCCTTTCTTCGATCCTTCCTTCGGGGCAAATCGACGCACCTAACCCCACGGTCTGAAAGACCATATTTTCCGTCGAGGTGCGTCGATTCCTCTCCCCGTCTAGGTTTCAGGCTTCAAAAAAACAATGGCGATTAGTAACTCTCTGCGGTAAGCTCTAAATAGGGGTGCGTCGATTTAGCGTCTAGAAACCTTTCGTGACAAGACTTCCTAGAGTAGCT # Right flank : GGACAATCTACCAACGGATAACATGGTTGGTCAGAATTAACTCCTTTTTTTACCCACTTATAGTAAAATTGTTCTTAATAATAAACCCCAGTCGCGGGTTCGGTGCGCCAACACCAGAAGCCCCACCGGGAGTAACCTGTAGAAGAGGTCACAATGAGTATTTTACGTTACGAAGAAAACGGAATTGAGTTCTTCACCCTAGAGGCTACGGGTGAGTCAGGAATGAGTCAATCTGGTTTAGCTCGTTTGTGCGGAGTCAAACCACACGCAGTCAACCAGTTGGTTAATTCAGTTATCACGAGTTCTAGTCCAGAATTCTTGAAACCCTTACAGGGAGATGAATTGACACTTATCACGAGTGTCAACGAGTTCAACAATGCCACCATCCTCAAAGACACCGTTTGCGCCTGCATCTTAGAATGGTACGCCTTTGAATCCCAGCGCCCGACAGAAGCAGCCCGCCAAGCCTTCCGCAAATTTGCCACCTTCGGCATCCGAAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 44932-45454 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973605.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 44932 35 100.0 35 ................................... GAGATTGCCGAAGATTTTTGATCCAAGGGTTTACC 45002 35 100.0 36 ................................... AATTATTGCATTGTACCATACAATGCTATTTTCCTC 45073 35 100.0 34 ................................... GCTTTACAATCAATTTCAAAATCTAAGTGTATGG 45142 35 100.0 35 ................................... CCTGTAGGATAGTGCCCCTTGCCTTTCAGGCAAAA 45212 35 100.0 35 ................................... CTGGCCAAATGATAGTCAATTGGTAATCTGTTAGT 45282 35 100.0 34 ................................... ATTATTTTCCTGCAGGGATTCTCGCCACTCTTCA 45351 35 100.0 34 ................................... CATTTACCTCTTTACTGGGCTTGTCCAAAAGTAT 45420 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 8 35 100.0 35 CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Left flank : AAAATCCGTTACTGTAGGGGCGCAAAGCTTGCGCCCTCCGATCGATCAGGTTTGCTGATCACTCTAAGTAGGGGGAGAGCCTTCGAGAGCCTCCGCAGCTAAGGGACTTGCGCTTTGATAATATGCCATCTGGCTGGTCTGATCCTTCTACAGAGGGATTTTCTGGCTGGGATATTATTCCCACGCAAGTCGCTATTATCTGAGAACGGTGGATTTTTACCTGACTATTAACTATAATGGTGATCGCCACTGCACCTTGACAAATCTATAGAGTTTTCCCCTTTCTTCGATCCTTCTGTCGGGGCAAATCGACGCACCTAACCCCACGGTCTGAAAGACCATATTTTCCGTCGAGGTGCGTTGATTCCTCTCCCCGTCTAGGTTTCGGGCTTCAAAAAAACAAAATATGGCGATTAGTAACTCTCTGCGGTAAGCTCTAGATAGGGGTGCGTCGATTTAGCGTCTAGAAACCTTTCGCCACAAGACTTCCTAGAGTAGCT # Right flank : CTACTAAAATTGCTTTAACAATCTTATTAAAAATGTTTTTGCTGAAAGAATCTCGCTCTTTTTTTAGACAGGGATGGACGATTGCAGTTTTACTAATTGCCCTGCTTGTTTCCCTGCCAATTTTATCGGTGGCCAGTAGTTTATTAACTAATTCCAGTCAAGTCTGGCAACATCTGATCGAAACTGTTGTCTGGGATTATCTAGTTAATTCTTTTTGGTTAATGAGCGGGGTGGGTAGCGGTGTTTTAATCATCGGTGTTGGCACAGCTTGGTTAATAACGATGTGTCAATTTCCCGGTAGTAAACAATTTCAATGGTTATTATTACTACCCCTTGCCGCTCCCGCCTATCTCTTGGCCTATACTTATACCAATATGATGGACTATTTTGGTCCGGTGCAGACCTTCTTAAGAAGCGTTTTCGGTTGGAATAGTGTCGAAGATTATTGGTTTCCTAATATCCGTTCTCTTTGGGGTGGGATTCTGATGTTAATACTGGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATCTCTTACTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 416-1484 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973622.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 416 36 100.0 39 .................................... CTTTGTATTTCTGCCGCTCTAAAACAGAAATTTCTTTTT 491 36 100.0 38 .................................... TTCCTCTGGAAGCACAGAATCAAGCCGATCTGGGCTAC 565 36 100.0 39 .................................... GCGGCCATCGTAAAATTCTGTAGTTACAGGGCCTAATTC 640 36 100.0 39 .................................... CCAGTGATATGCCCCGCACAGCGGCCTCGAGATAAGATT 715 36 100.0 39 .................................... ACTTGCTTAGTTGCGTTGCTACGAGTTAATTTGATTTTG 790 36 100.0 42 .................................... GTTCTAGACTAGATTGACTGAAGCCCATAGCAAGAAAATCAG 868 36 100.0 41 .................................... ATACCAGCATCCCCAGGGTCTCCTTTATCCCCTTTTAGTCC 945 36 100.0 43 .................................... GTAGTTTTAACAATCTCCCAGATTTCAGATAAAATTCCTTGAA 1024 36 100.0 35 .................................... CAGTTTAGAGAAGAGCCTGCGTGGAACCACTCGAT 1095 36 97.2 36 .G.................................. GAGATATCACGATCCATGAGGAAGGCGTTGATAATC 1167 36 100.0 35 .................................... CATAGTCATTGGTTCCGCTTAGACGGTAATTCCAA 1238 36 100.0 34 .................................... TCGCAAGCCCAAAGCATCAAGATAACGATCAGCC 1308 36 100.0 33 .................................... CACGAGTGTCGTGAACGAGCTCTTTGTCCGTTT 1377 36 100.0 36 .................................... AAGGCTTTCTCCAATATTTCCGGATTCAATACTTGT 1449 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 99.8 38 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : TTATAACCAGCTACTTAATTACAGATAATTACTTAAGCAAAATTAATTACACATCGAGAGGCGGAAACTGTACGCTAAAGTAGTAGAAAGGGTCAATCCTCAAGAGGATGATGTGCGCTTCTATGGGATTCCCGAAGAAGCTGTCTCTAGATTGTTGGTGATGGGAGGTTCTCCTCCTCAACCACCCCCAAATCTCTACATCATCTAGCTTGTCCCCCAACTCTTGACTGAAAATCGATGCACCCTCTCCCCGACCTAAAACCCCGATTCTCTGGTTAGATGTGTCGATTGCTCTCCCAGTCAGGGTTCTACCCTTTGGTATCGGGACTTTTACCCCCCCCAGGACCACCTTTTTGGAGATGCGTCGATTTGGGGGTCTGTCTTCCCCTCTCGATGAGACTTTCCAAGGGGTACTC # Right flank : TAGAAAAAGGGTTTCTTTATAAACCCTTTTTCTGCCTTTCAATTTTGTCGAAATATCTATAAGTAGGTGGGTGGAATTAAATATAAAATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 312615-314156 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973582.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================================================================== ================== 312615 36 100.0 39 .................................... CATCAAAAGCCTTATCCCAAGTTTCCTTAAGTTGCTTTT 312690 36 100.0 39 .................................... TCTATACTGCCGATCAATATAGAGGGATCCCCCTCCTCA 312765 36 100.0 40 .................................... TAGGGTCGCTGGTAGGCTGTACCAAGGCGATATAAACGAA 312841 36 100.0 36 .................................... ACTCCTTTCAGCTTCTCAGTCTCAGCCGATATTTCA 312913 36 100.0 39 .................................... GTCGACGAGACTACCATTTGCTAATTTCAACTGGTAGTC 312988 36 100.0 35 .................................... AATCCTGATCTGCTCATCCGGCGATGGGTATAACA 313059 36 100.0 37 .................................... AGCCAAATTATAAAGAGAAGTCGATCGCTCCCTAATC 313132 36 100.0 36 .................................... TTGATCATGATGAGATCAGGCGATTAAAAGCCGTTA 313204 36 100.0 43 .................................... CGGTGAGGGCGAGCAGCCCGGCCGGCAGCGCCTGGGCGGGGGC 313283 36 100.0 42 .................................... TCGGTGTCTTCATAAATAAAGTCGTCTGTAGGCTCATTTGAT 313361 36 100.0 37 .................................... AGTTCATCAAACGGATCTTTAATCTCGTGATAGCCTT 313434 36 100.0 38 .................................... AATTCTTTAAATACGCTCTATCTAAAGGTAGATAGTTA 313508 36 100.0 36 .................................... TCGATCAAGGTGCATCCAACGAAACAAGATTTTTTC 313580 36 100.0 39 .................................... TCGTTCTCTAAGTTTTCTGACGAAGACTTCTCCTTTAAA 313655 36 100.0 41 .................................... ATGAAGAGGTTATTAGTGCGATTGTTAATACGATTCCCACT 313732 36 100.0 39 .................................... GGTAGAAACCATCGAGAGATTTGGACCCATTGGACGGCT 313807 36 100.0 38 .................................... TTCAAATACTATCCGATAGTTATCGTAACTAATAGTTG 313881 36 100.0 134 .................................... TGAGCGGCTATCCTATCCAAGAAACAATTAAGCTTAAGCTTTGTTAAGGGTTGAAACGATCACTTGGATAAACCTGATATTTTCTGGAATATCGAAACAATTAAGCTTAAGCTTTGTTAGGGATTGAAACATCT 314051 36 100.0 34 .................................... TGAGAGCCAGCTATCCATATCTGCCTTTGACTGA 314121 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================================================================================================== ================== 20 36 100.0 43 CTCTCTACTCGCTAGAGTAATTAATTGAATGGAAAC # Left flank : TAGTTAGCTAGATTGAACAAATTTTTTGACAAAAAGGCATAATGGTCGATTTCTGACCAGAAGGGATGGTTTTGACTGATAATATGACGTTCAACTAGCTTCATATCTTGATTATACCTGATAACGTTCTTAAAATCTATCGGGGGCCAAAGTTACTTATTTTAGTTATCTAGCTACAGAAATGAGTAGCTTTAAAAAGCTTTAGGTAGGTTTTTGGTTTCTGTGGTTAGCTCCGAGGGCTAGAAAATCCGATCAGGACTGGAAAAATTAGCCGATCGATCGAGGGGTTAAATTATTGGCTTTTTAGGGTATCATCGACTAGCGACGGATAGGGGTGGGAGCAGATAACCTCGGTTTCCGGTAAAATCCCTCGATCTACCACAGGATAAGGGTTTTGTGGTTTATGGGGTTGACGGTGCGACCGTATCTAGCTATAATTAACTTATCCGTCGCAACTGGCTTCTGAACCTCAATCCTGTTCGGACGTTTGCCTACTGGCT # Right flank : CCCGCTTTAAATTTTGGATTGAAATTTTGTGTTTATCTCTCTACTTGCGCTTAGACATTAGCTGAATCTCCCCCAATCCCTTTCCTGTTGACCCTTGCAAAAGTGCCTCATCTCAACAGGCAATTTAAATGCGCGGGCAGCTTATTCTATATAGTAATGTTTAATTGTATTCCCACAAAAGTTGCTTATGTCCTTACCTGAACTCCCTCTTCATCTTCAATTAACCCAAATGGTTTCGGGTTACTGGCTATCTCAGGCCATCTATGCTGCGGCTAAATTAAGTCTAGCCGAGCATTTAAGCAAAGGAGCGAAATCCTGTCAAGATTTGGCCTCCCTAACTGAGACTAATCCTGCTGCTTTATACCGACTGATGCGAGCATTAGCTAGTGTAGGAATTTTTCAAGAGACTGAATCTCAACAGTTTATACTAACTCCCTTAGCCGAACATTTATCTAGTGACCATCCCCGGTCAGTAAAAGCGACAGCAATTATGTTAGGAG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTACTCGCTAGAGTAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 1098038-1104336 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973582.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 1098038 37 100.0 36 ..................................... TTGATTGAAGCTTTGAAACTAGAAGAAATAGCTAGA 1098111 37 100.0 35 ..................................... ATCTAAAAACTATCAATGTCTCCACTTTTAGCCCT 1098183 37 100.0 36 ..................................... CGATAAAATTGCTATTATTATTCGCAGTTTATAATC 1098256 37 100.0 35 ..................................... TTGATCACTTGAGCTTCGGCGGTGGTCCCGATTAG 1098328 37 100.0 38 ..................................... CCTTAAAGCTTTACCAAAAATCTGTGCTGATTACCCTA 1098403 37 100.0 34 ..................................... TACTTATTGTTTACACTCTCTTTATAAGCATATC 1098474 37 100.0 35 ..................................... ACTAGAAAGGATTGAGGCCTTAGAAGCTAAACCAA 1098546 37 100.0 37 ..................................... AAAAATCGAGCTAGGCCGCCTCAGCGAGGCACAAATG 1098620 37 100.0 34 ..................................... AGCGATCGATAGATTGATTTTCAGGCGCTTGGGT 1098691 37 100.0 35 ..................................... AAGCTGAAGTCGCTCTCCCAGGGATTCCCTTCTGC 1098763 37 100.0 35 ..................................... CCTTGCCCAAATCGGTAAGAAATCCGGATAATTTC 1098835 37 100.0 39 ..................................... AACCAGACTGGACTACGCGGCAAAATTTGGGAGAATGGC 1098911 37 100.0 33 ..................................... ACTTCATGGATTATACGCAGCCATAGGGCAAAC 1098981 37 100.0 36 ..................................... GAGAGTAGGATTAATTTGATAATTGAGATTATTATT 1099054 37 100.0 35 ..................................... TGGAAAGATTCTTGGCCGATCAATTATTTTCCTTT 1099126 37 100.0 34 ..................................... CAAAACTAAATTTAAATTAGTTTGAATATTTGCA 1099197 37 100.0 41 ..................................... AGTAAAGGAGCCTCAATTGCGAGAGAAGTCCCTAAAGTCAA 1099275 37 100.0 34 ..................................... CAATTATTGCCAATGTGAATATGATTTGCGATAT 1099346 37 100.0 35 ..................................... ATCTTCTGTCCTTGGCGCGTCGTTAATTTCCCCTT 1099418 37 100.0 37 ..................................... CGGCACAGTTTGGGCATTCGATCGATTTAAAAGAAAT 1099492 37 100.0 40 ..................................... CATTGGGTAAAGGCTGCCCTAGATTAGCTAAGTTGGGATC 1099569 37 100.0 34 ..................................... CATAATCCCAAGGGGATTAATCAATATCCTGGGC 1099640 37 100.0 37 ..................................... AGAAGCGATCGATCTATGTGATCGCCGAAAAGATTGA 1099714 37 100.0 34 ..................................... TAGGCATTCTTGAATTTCAAAACCACAGTAGTTA 1099785 37 100.0 36 ..................................... CATTATAAAGAAAAACCATTGGTTCTGCCCACGGGT 1099858 37 100.0 36 ..................................... TGATTTGTCCCGTAGTCTTAACAATCTCCCATATCT 1099931 37 100.0 33 ..................................... ATGTTTTAATTTCCTTCTAAGTAAAGCCAAGAA 1100001 37 100.0 35 ..................................... AATCATCAAAGCGCACCCCGGATAACTAGCCACCA 1100073 37 100.0 36 ..................................... CCCCTTTATGGTCCGTACTTAAGTGCCTACGAAATT 1100146 37 100.0 35 ..................................... TTTTGGATTAGTTGCCACTTGCAATATAGGCGGAT 1100218 37 100.0 34 ..................................... AAAAGACTTCTTTGTCCCGTCGTAAAGCATCGCT 1100289 37 100.0 38 ..................................... CCAAGTCACAAAGTCTCAGTCCTAGTGATTTTCTACCT 1100364 37 100.0 41 ..................................... AGAATTGACAAAAGCCAAAACCTATTACATGGATCGGCGTG 1100442 37 100.0 35 ..................................... TCGCATAGGGATATACAGCAATATGATCTGTGGAG 1100514 37 100.0 38 ..................................... GATAATCAAATGAAAGTAAGTATAATTCTGATATTCAA 1100589 37 100.0 37 ..................................... AAAAGGAATTGTGATGATTCATCTAAAATCACTAGCT 1100663 37 100.0 34 ..................................... AAATAAAACCCCGGGAAGTTGCCCAAAAATTCGG 1100734 37 100.0 34 ..................................... AGTAGTCCATCCATGATACCAAACGATACCAGAG 1100805 37 100.0 34 ..................................... GTTTGACTGTGCCACTTTAAGCACTGGCACGATG 1100876 37 100.0 39 ..................................... AAAGAATTTACGCAGTCTAGAGGCATCACAATCTATAAA 1100952 37 100.0 36 ..................................... TTACAGGCGATCTGCGACAGGTATGAAGTACAGCCT 1101025 37 100.0 34 ..................................... CTACACCCGCCGCAAAACAAACAAATTGTCTCCC 1101096 37 100.0 36 ..................................... TGGATCAAATATCCAATTCAATAAATGGATACTTAA 1101169 37 100.0 35 ..................................... TCAATGAACACGCTAGAAACAAAATTAAAAAAATT 1101241 37 100.0 37 ..................................... TGTTTTAGAGAGAGGCGATCGCATAATTGCAAGTTGG 1101315 37 94.6 32 .................A.....C............. ATCCAAATTAGTATCTAAATTAGTATTCAAAT 1101384 37 94.6 37 .................A.....C............. AAAATTTCCCTCTCAAGTTTCAATGGATGAGTCTGAC 1101458 37 94.6 34 .................A.....C............. AGAAAAGATCATGAAGCATACGTCGCTCGATACG 1101529 37 94.6 34 .................A.....C............. GAGCGTTGTCACCGTTGTAAGCCGCACTGTATAA 1101600 37 94.6 39 .................A.....C............. ATATAATATAATATAATATATAACCTATTGACATATACA 1101676 37 94.6 52 .................A.....C............. CTCGCAATTGCACGGGCTATATGCAGCCATAGGCGCGGTTCTTGCCACAAGA 1101765 37 94.6 33 .................A.....C............. ATCATGGCATCGGTGAAATATTGCCCCCCTAAT 1101835 37 94.6 34 .................A.....C............. AAAAAAGATCATGAAGCATACATCGCTCGATACG 1101906 37 94.6 34 .................A.....C............. CCTAAAAAAGTCACTGGTACACCCATGTTAACCC 1101977 37 94.6 35 .................A.....C............. TCATCAGCCAAGTCTTGCAGGATTGCTGATACCTC 1102049 37 94.6 42 .................A.....C............. AAATTAATTCTCTTAGTGCCGTTGGCAATTTTTTTTAAGCCG 1102128 37 94.6 35 .................A.....C............. GGTGATGGCCGGCTCGATCAATCCTTCCGCTTTCC 1102200 37 94.6 35 .................A.....C............. TCACTCTTGATAGAATAGATACTAAGAGCCGCAAT 1102272 37 94.6 35 .................A.....C............. GCTCGATACGGACGTACTTGGCTAAATCATTCCCA 1102344 37 94.6 34 .................A.....C............. CAAAACTAAATTTAAATTAGTTTGAATATTTGCA 1102415 37 94.6 34 .................A.....C............. TTTAATAAAGTCATTTTATCAATTACCCGCGATG 1102486 37 94.6 34 .................A.....C............. GAGTTAGATCGAGAGGAGTACGATCTTGACTATG 1102557 37 94.6 34 .................A.....C............. TTTAGCCCATCAGGAAAGTTTAAAAACACAATTT 1102628 37 94.6 35 .................A.....C............. GAATGGGCGGGCTGGAGTCCGGGCTGGTGGCTGGG 1102700 37 94.6 35 .................A.....C............. AATTCTCTTAGTGCCGATGATTTTTTTTAAGCCGT 1102772 37 94.6 35 .................A.....C............. ATCGGCGGCGATTACCAAATAGCAATGGCAAACTA 1102844 37 94.6 35 .................A.....C............. GCGGTTACTTGACAGTTGCTGGTGGGTGGGTCCCC 1102916 37 94.6 37 .................A.....C............. GAAGAAAATTAAAAAAAATCCGCAAAAAAGAAAAACT 1102990 37 94.6 35 .................A.....C............. AGAAAATCTGATAGATAGCGCTTCACTGATTCTGC 1103062 37 94.6 36 .................A.....C............. CGTAAGATTCGCGGAGCCACAGGAAGGAAATCCCTG 1103135 37 94.6 34 .................A.....C............. CGATCGGTTGCTCGCGGCGATCGGGGCTTGCTGG 1103206 37 94.6 36 .................A.....C............. TACTTATTTTAATCATGGGAATGGTGTAATTAACCC 1103279 37 94.6 36 .................A.....C............. CTGGCCACGGGGGGTGCGGGGGGATCGGACTTCATC 1103352 37 94.6 41 .................A.....C............. GCCAGGGTGGCCTGACTTCCTATGGCAAAAATATGATCCAG 1103430 37 94.6 36 .................A.....C............. GCTGACTTGGTAATACTGAAACTTTACCTAAGAATG 1103503 37 94.6 35 .................A.....C............. AAATTTTCCTTTTGAGTCAACCCCCACAGTTAAGG 1103575 37 94.6 34 .................A.....C............. GCAAGCTAACAACAACAACGATAAAAAAAATTCT 1103646 37 94.6 38 .................A.....C............. TGTCGCCCGCCCTGCCGGGGAAAAGGTACTCGTTCGGG 1103721 37 94.6 35 .................A.....C............. TAGCAAGTGAAGATAATTGGCGATCACGAACTCGG 1103793 37 94.6 37 .................A.....C............. AACATGAGCAGTAAACCACCGATTAGCTTCAGACTTT 1103867 37 94.6 36 .................A.....C............. CTCAATTGGGAATTCGAGGATGGTAAGGGCATTGAT 1103940 37 94.6 35 .................A.....C............. TACCGTTGCCGCCGTTGTAAGCCGCACTGTATAAG 1104012 37 94.6 35 .................A.....C............. ATCGGATAATTCTATTGGCTTAAAATCACCTAGAG 1104084 37 94.6 36 .................A.....C............. AGATCATTCTCACAAACACTAGCAGCAGAAAGCCCT 1104157 37 94.6 34 .................A.....C............. TTGCTTTCCAGTAATTTTATCGAATTCCGGCCAT 1104228 37 94.6 35 .................A.....C............. AGCAATCGGATGATCACAATCAGAAAAGCAAATAC 1104300 37 94.6 0 .................A.....C............. | ========== ====== ====== ====== ===================================== ==================================================== ================== 87 37 97.4 36 GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGATATTTCCGACGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTGACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTCCTCTGCGCCTGTTGTCGGGGTAAAGTGGAACGTATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCCTCGGAGTAGCTGTAAAAATCCTTAACTATTATCTGGTGGCTGGAAAGCTTATGCAATATGGATTCGAGATTATTTTCCTTTCCAACGTGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGTTCTTGAAGAAGTGGGTCACTTGCTGTATAATTGGTTTATTGCGGGTGCGGCGCAAATGAACCTTGAAAACTCCATAGCGTATGGCTTTTACCAGTGGGCG # Right flank : CTCGCCCCAGGAGGAGTGCCGGGAGGAGATCGAAAATGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACAAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTATATCTTAGAAAATACCTATAAATCCCCGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACGAAGAGGGGGAGCGATAAAAGCAAGCATTAGAGCTAGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTCGCTGCTTGGCTTCATACTTATCCAATTCATTGAAGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTTCCTTTTTCCTTCTCATCAAGCAGTGATCCATTGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACGGGACGATCCACCCTTTAGCCAAAGGGATCACC # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAGCCCTATTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 1104549-1106165 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973582.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================================ ================== 1104549 37 100.0 36 ..................................... GAAGAGGGGGAGCGATAAAAGCAAGCATTAGAGCTA 1104622 37 100.0 36 ..................................... TCGCTGCTTGGCTTCATACTTATCCAATTCATTGAA 1104695 37 100.0 34 ..................................... TTCCTTTTTCCTTCTCATCAAGCAGTGATCCATT 1104766 37 100.0 35 ..................................... GGGACGATCCACCCTTTAGCCAAAGGGATCACCCA 1104838 37 100.0 34 ..................................... TGGAGAGCCGAAAGGATGCACGGGCTGATCAGCT 1104909 37 100.0 33 ..................................... GACAAACGTTGACAAAAAATGTAAACTGGTAAG 1104979 37 100.0 34 ..................................... ACTACACGGAACCCCTGCCAATTGCATCCATGCA 1105050 37 100.0 34 ..................................... TTAATTAGATCGTTATCCTCAATTTTAATCTTGA 1105121 37 100.0 34 ..................................... ATTATCAGGAGCAATATAGGCAATATTACCCCTG 1105192 37 100.0 37 ..................................... GCGAAGTTAGCGGCTCCTGTGGTTGAGCCGCAGCCGA 1105266 37 100.0 35 ..................................... GCGATCGCTCTTGCATCTTGGGGAGTGAGGGCTAT 1105338 37 100.0 35 ..................................... CAACAAGGACGCACGGAATCCATCAGCGCACTAAA 1105410 37 100.0 34 ..................................... TGAAAAGGAATTGGGCGCAATTCCATATACTCAA 1105481 37 100.0 34 ..................................... TCGTGATACTTTTTTTATCCGCGTATCGTGGGGA 1105552 37 100.0 43 ..................................... GGGAGCAGCGGCAGCCCTGTGTACTTGAGATATGAAGCCGCCA 1105632 37 100.0 35 ..................................... ATATACCACCTCCTTCTTTTTGAGAAGAACAATTT 1105704 37 100.0 34 ..................................... CGGGAAGAAACATAGTTTTTACCATTATCGGTTT 1105775 37 100.0 35 ..................................... ATCGGCTGCGGCTCAACCACAGGAGCCGCTAACTT 1105847 37 100.0 172 ..................................... AGTTTGCGGAGGATGATTTAGGGGAGCCTGATTGTGATTGTTCGGGAGCATCTCACCTTTGTAACCCCTAAATCAGGTTTTTATGTCAAGCTATTTTGAAAGCCTTGCTAGAAAACAGTTTTAGGGATAAGTATAATTACTTACTTGCATAAATGAGATGCTCCCCCTGATT 1106056 37 100.0 36 ..................................... CACGTTAGGTGGCATCCTGAGAATCCTAATGATATC 1106129 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================================================================================================================================================ ================== 21 37 100.0 42 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : ATCGGATAATTCTATTGGCTTAAAATCACCTAGAGGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACAGATCATTCTCACAAACACTAGCAGCAGAAAGCCCTGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTTGCTTTCCAGTAATTTTATCGAATTCCGGCCATGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACAGCAATCGGATGATCACAATCAGAAAAGCAAATACGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTCGCCCCAGGAGGAGTGCCGGGAGGAGATCGAAAATGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACAAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTATATCTTAGAAAATACCTATAAATCCCC # Right flank : CCGATCAGGAGATTATATTCTAGATTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCTAGATTTTTGATCTGAGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTCGCTACACACGAACTATGATGATGCAATCGAGCGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTATGCCCCCTAACGGGGGCTTTAGGAGGCATTATGCGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACACTGTGGCGAAATCTGTTTACCCGTCGAGAGCCTTGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACGGCTTAAGCTTGATTTAGCCTTTAAATCTCGCACCGGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACTCCTCTTTTTTTGTGTAAAATAAAA # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.64, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 4 1106314-1108938 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE973582.1 Microcystis aeruginosa PCC 9808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================== ================== 1106314 37 100.0 34 ..................................... TCGCTACACACGAACTATGATGATGCAATCGAGC 1106385 37 100.0 36 ..................................... TATGCCCCCTAACGGGGGCTTTAGGAGGCATTATGC 1106458 37 100.0 35 ..................................... ACTGTGGCGAAATCTGTTTACCCGTCGAGAGCCTT 1106530 37 100.0 36 ..................................... GGCTTAAGCTTGATTTAGCCTTTAAATCTCGCACCG 1106603 37 100.0 35 ..................................... TCCTCTTTTTTTGTGTAAAATAAAAGCAGTAGGAG 1106675 37 100.0 36 ..................................... GCACCCACCGCAGCCGGAGCCGTAGCCCGCGCAAAT 1106748 37 100.0 36 ..................................... CGGGAAAAAAATTCGCCAAGCTGATCGAGAGTACGA 1106821 37 100.0 34 ..................................... AGAAAATTAGTTGACGCTAAGATTGATATTCCAG 1106892 37 100.0 34 ..................................... TTCAATAATGTAATTTTATCAATTACCCGCGATG 1106963 37 100.0 39 ..................................... GCCCAATCGCCAAAGTGCTATGATAAGATATGTTATCAA 1107039 37 100.0 42 ..................................... GGGAGCAATATAGGCAATATTACCCCTAATACTATCACGCCA 1107118 37 100.0 34 ..................................... CGATTAGAATTAATCTAAATCTCCTCCGGACTGA 1107189 37 100.0 35 ..................................... TTAGTTGCTGGCCCAATGAAATTAGTAAAAACTCA 1107261 37 100.0 35 ..................................... CAAAGTAGTGTCGGCACTTTTTGCTCTTATGATGC 1107333 37 100.0 35 ..................................... CTTTCTTTTCTGTCTGTAACCGCCGGACTTGAGAG 1107405 37 91.9 94 .................................GG.G CATCTCACCTTTGTAACCCCTAAATCAGGTTTTTATGTCAAGCTATTTTGAAAGCCTTGCTAGAAACCAGTTTTGGGGATAAGTATAATTACTC 1107536 36 59.5 34 AC.TGCG.A...GAG.TG.T.C-.............. AAAGGCTGATGGTGCTTTCGATCGCATCATGCTG 1107606 37 100.0 34 ..................................... TATTGAGCCTGTAAGTCGGGAATTTAAAGGTAAA 1107677 37 100.0 35 ..................................... GAGAAATTTGGTAAATTCTGATTGAAAAAGTAGCT 1107749 37 100.0 35 ..................................... GCAAAGGGAGATCAAAAGGAAGGAAGCGGAGTTGG 1107821 37 100.0 33 ..................................... TTGATTTGATAAATGGCGACTTCAATTTTCTCG 1107891 37 100.0 35 ..................................... TTAATAGCTAAGGCGATTGATTCCCAATTTTTAGG 1107963 37 97.3 35 .......................T............. TTGCTAATTGCACAGCGCATTAACCTACATGATTG 1108035 37 97.3 34 .......................T............. CTCACTTCGTGTTACTTCAATACACTTGATCCAT 1108106 37 97.3 35 .......................T............. AGAAAGATAAACCGGCCTCTAGGATAATCAGCACA 1108178 37 97.3 34 .......................T............. TATCTTTAGGAGAAGCATCAGATAGCCACAGAGA 1108249 37 97.3 37 .......................T............. ATTCAGATAATGCAACTCCTGAACTGAACTCTTTTTT 1108323 37 97.3 33 .......................T............. GTAGCTGGGATTGTATAGAAAGCGAATCTTCTC 1108393 37 97.3 40 .......................T............. TTCTCCCCAGCAATCACCGGGGGATTCATTTAAGCTTCTG 1108470 37 97.3 37 .......................T............. CATCGGAGAGATTAATTTCATAAGTCCGCTCGATCCG 1108544 37 97.3 35 .......................T............. AATCAGAATATTTTATCGGTAAAAACTGATTTATC 1108616 37 97.3 35 .......................T............. TGCCAGATAAATCCTTATCGTAAAGTAAAGCGACT 1108688 37 97.3 35 .......................T............. AAACGAATTTTAGACGATCCAGACAATGACATTTA 1108760 37 97.3 33 .......................T............. AATTTCTTGGATGCAAAAAATAACCCCTAGCAA 1108830 37 97.3 35 .......................T............. GGCTGTGCCAGTGTGATCGGTGCGGTTAGTGCCAG 1108902 37 94.6 0 ..................A....T............. | ========== ====== ====== ====== ===================================== ============================================================================================== ================== 36 37 97.5 37 GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Left flank : CGGCTGCGGCTCAACCACAGGAGCCGCTAACTTGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACAGTTTGCGGAGGATGATTTAGGGGAGCCTGATTGTGATTGTTCGGGAGCATCTCACCTTTGTAACCCCTAAATCAGGTTTTTATGTCAAGCTATTTTGAAAGCCTTGCTAGAAAACAGTTTTAGGGATAAGTATAATTACTTACTTGCATAAATGAGATGCTCCCCCTGATTGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACCACGTTAGGTGGCATCCTGAGAATCCTAATGATATCGTTCCAATTAATCTTAAACCCTACTAGGGATTGAAACCGATCAGGAGATTATATTCTAGATTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCTAGATTTTTGATCTGA # Right flank : CTGGAACTTGAAACCTTCTAGTCTATTAATTTCAAAATGAGAATTGCTGTCAGTGAGTTTATCGAACTGCTTGCGTCCAAAATATCCTATAAATTAGAGGAAGTATAAGCTAATTTGTATTGATAGTAAATCTGTTTTTAATAGTATGAGCAACTCTCAATCGCACGCTAAAAACCTTCTCCCTTGTTCCTTCTCCCCACTTCTCCATACCTATTACCTAGCATTATTAGTATTCTATAATACCAATGCTTAGGAAACTATAAAGAAAATCCCAAGATTAGGCGAGTCCCTTGGCGAAAAAGGCTATAGTAGCATAAAATCCGTAATTTTATCCACAAAATTGTTATGACAGTTACCAATAGACAAGAGCTAGAAGAACTGATTCAACAGGTGAAAAAAGCTCAACAACAATTTGCCAACTATAGCCAAGAACAAGTAGATCTTATCTTCAAAAAAGCGGCATTAGCAGCCAACAACGCTCGCATTCCCCTGGCTAAAAT # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTACTAGGGATTGAAAC # Alternate repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //