Array 1 1029-1508 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000106.1 Thermus scotoductus strain 37_S37 NODE_196_length_3068_cov_216.857_ID_391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1029 36 100.0 35 .................................... GAGGCGTTTAGGGGGGAGGCTAAGCGGTATGAGAG 1100 36 100.0 38 .................................... CTACTATGTGGTGGGCAACACGGAGGAGCCAACGATGG 1174 36 100.0 42 .................................... TCTGACTTTTTCGTCCTTGAGGGCCTCGCTATAGGCCGTGTT 1252 36 100.0 43 .................................... TTGGACCCTTTCCCCACCTTCGCCTCGATCTCCTCGTAAATGG 1331 36 100.0 31 .................................... CGTGGGGGCGGCCCTACCTCTTCACCCTCCT 1398 36 100.0 39 .................................... AGCACTAGCTAAGATGGCAAAGAACTTGTTTGGTATTAA 1473 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== =========================================== ================== 7 36 99.6 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : AGTTTCCCAAGGGAGAGGCGGTGTACAAGCTTTTGTACCTGGAGTCTGAGCGGCAGGAAGGGAGGTGGGCGGAGCGGAGGTTGAAGGGTGTTGCCGAGGTGCAGGAGGTGTTGGAAGGGATGCTTCGGGAAAGGTATGCCCCCCGTACACAGACGCTTACACATAAATCTTGACACGACCGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGCTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCTGGAAGCCTGGGTGGCTTGTCTTTTTGGCTCTGCCAAGCTTTGTTCGCCGCCTGCTCTCCCGTCCCTGGCAAATGGGAACTAAACGGGCTTTCTCGGTCGCCAGGGCAGTAGGTGGTGGTGACCTCCCTCCACCTTTATGAGCCGAATCCCCTCTAACGGTGGCGCAGGGTCTTGGCGGAAGGGGCATGGGAGCGGGGTCTCCTGCCGGTGTTCGGATTTCACAGGTTGCCGCCGGTTCCCTGTTATCCTCCATAACCAGGTGGTGGGCAATGTGGAGAACAACCCGCGACCCCGACGCCCTTAGGGCTAGTTTTATCGCCCTTCGGGAGGCGGTTAGGCGAAAGGCCCTGGCCCTCGAGGCGCGGTATGAGAGGAAAAGGCGCCCCCTGGAGCGGGCCCGCCAGGAGTTCTTGCAGCTGCTCGAACACCTTCGGCAGCAAGGGGCAGAAGGCCGTTACCCAGCCTCCTTGCTCAAGCCCGCCCTCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 354-1910 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000130.1 Thermus scotoductus strain 37_S37 NODE_217_length_2490_cov_83.8807_ID_433, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 354 29 100.0 33 ............................. CGAACCCAGTACTCTCGGTCATAAAAACACAGC 416 29 100.0 33 ............................. TGATGGGGATCAGCCGGAGACGACCGGGCTGCC 478 29 100.0 32 ............................. CCCCTCAATCAGCGCAGTCATGCGTCCTCCCT 539 29 100.0 33 ............................. GCCTGTTTCGCCAGAGCTAGCGGGTCCACACGC 601 29 100.0 32 ............................. TATGCGGAGGATGACACCAACGGCCACCCCCA 662 29 96.6 32 ............................T GACCCGGCCAGCGTCCCGGCGGGCGTACATCA 723 29 100.0 32 ............................. CATTCCCGCCCTACCTGCACGCAGACGCCCAG 784 29 100.0 32 ............................. GGCGTCCACGAGGAGGAAGGGATGAAGACTCT 845 29 100.0 32 ............................. GTTAGAGAACAAGCCCACGATGGCCTGGGCGG 906 29 100.0 32 ............................. GCCCATGCCCTTGACTTTCCGCATTCCTCCGC 967 29 96.6 32 ............................T GTGCCCGGTGGGCTGATGGGGCTGATGGGGCT 1028 29 100.0 31 ............................. TAGCAATGGGCGTCATCCAGGACATATCCAC 1088 29 100.0 32 ............................. AGAGAGCGAGCCTCAGGGCTGGAATGGACACG 1149 29 100.0 31 ............................. AAAGCGGCCTTCCCCCTCTTCCCGGAACCGA 1209 29 100.0 32 ............................. CCCCTCCGGCACGCTAGTCCCCCTGACTTTAG 1270 29 100.0 33 ............................. AGGGCCACGCCCAAACACGAACCCGGACCACTC 1332 29 100.0 32 ............................. GTTCTCCGCCGCATCCAGGACCCACTGAATGA 1393 29 96.6 32 ............................T CCCGGGCTAGCTGGCCAAACGCATCAAGGAGG 1454 29 100.0 32 ............................. ACGTCATCCCACGAGTCTATTCGCCGCCACCC 1515 29 100.0 32 ............................. AGTCCGGTGGGGGTGGCGGTCCTGTCATTGAC 1576 29 100.0 32 ............................. AACACCCAGCAATCTATGGCCTGGAAGACGTC 1637 29 100.0 32 ............................. ACCTGATTAGGGTCAGTATAGGCCAGTGTTCC 1698 29 100.0 32 ............................. AGACTATTTTCAATGGCCGCCTCGTGCGGGAT 1759 29 100.0 32 ............................. AGACGGCCCTTATCCACCACCTCAATCCGCCG 1820 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 1882 29 89.7 0 ..............C........A...T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.1 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : AGGGCCAGGAGGCCCCAAAGGGGGTACTGCCGGTTGCGGGCCCGGGGGTCGGGGATCTGGGACAGGGCTTCGCGCAGGGTCATGCCCCCTCTTTACTCCAGGAGCCGCATATAGGTCAAGTCTGCTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGTG # Right flank : GAGAATGTACAACCCACATTCCGCACCCCCTTCACTCCAGCAGGTAATATCGCCCGGCCCCCAGAAGGCGCACCGCGGTCTCGTGATGGGGAGCCAGGTTGAGGACGAGCAACTTGCCCCCCAGCTCCACCAGGCGGACCCACATAAAGAGTTGAAACACCCAGCGCAAGGTGGGCTTGGCTGTGGGTCTCCCCTTTTGATCCGGCAGGCTGGACCCCGTCCCCTCCAGCCTCCGCCTCAGCTCCCACTCCCCCAGGGCGTACACCAGAAGGGCCAGGGCCATCACCATCCCCAGGGCCATCACCCGCTCGGGCCGCTTCAAGAAGGTGCTCTCCGTAAAGAACAGGGGGTCTTTCAGAAACCGGAATCCCCGCTCCACCGTCCGGGCCTGGTCCTTGTACCGCCTCAGCACCTCCCAAGGGGGAAGCCCCTCCCGGTCCAGCACGTTCGTGGCCAGGATGAACCGCCCCAGCCCCCGCCTCGCCCGCTCCAGCTTCCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 552-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000183.1 Thermus scotoductus strain 37_S37 NODE_265_length_1369_cov_72.7721_ID_529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 551 29 100.0 30 ............................. CAGGGCGTGGGCATCGCCCTCGGGGTGGCC 492 29 100.0 32 ............................. CGTAAATGGGCGGTAGGCAGACCTTCCGCCTC 431 29 100.0 32 ............................. TGGGTCTATGGCCGCACCCGACAGGAAGTGGC 370 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 309 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 248 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 188 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 127 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCTTGAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGATTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GTGGCTCCTGTCTCGCCTGGGCCGCCATCGTGGGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1139-883 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000154.1 Thermus scotoductus strain 37_S37 NODE_239_length_2037_cov_35.9843_ID_477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1138 36 100.0 37 .................................... TCCAAGAGCCACTCCAGGTTGAGGCGCTTGAGGAACT 1065 36 100.0 40 .................................... AAGTGTACGTAGTCGACCTTCTTCACCGACTCCTTCACCT 989 36 100.0 35 .................................... CTTCCAGACTAGGGCCGGGCACTCCACGCCATCAG 918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 38 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : CCAGCGAAGGCCCTAAATACCCAGGATGTCTTGGAACCTGCGCAGCGGACTTCGGGGGGCAAAACCCCTCCCCGAAGTCCGAGGCCTAGCCCCCCAAAGCCGGAGACCTACCACCGGACCCATACAACCGGCGGGCCGGGGATCATACTATACACAGCTGCATTTTTGTGCCGCAAAGGAAACTACTAAACCCGTAAGGATTGGAGCGTGCGTACTCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCGGGTTTGGCAATATGGACGGGTCCTGGCAAACAGTATGGAAAAATTTCCTCGAGGGTGCCTGCCGTGGCTCGGGCGATGAAGTGGATCGGTGTGGTCATCCGGACGACCCAGGGGGGATCCGTGGATTACGTCCCGTTCCCCGCCCTGGGGGAGGCCAGGGGATGGGCCAGAAAGGAAAAGATGGGTGAGGCCGTCCCTTTTCCCCAGCCCAGGTGGCTTTTCCCTTACCCGGGGGAAGAGTGGTGGGTGGGCTACCAGGAGGGAGGGGAGGTGAAGGTGGTGGCCGTTTTTCCCAAAAGGCTTAGGGCCCTTCCTGATGTGCCCATCCTGTTCCGCTATGCGGAGTACCTGAAGGAGCTCATGGGCCCGGACGCCTCCTCCGACGAACCACGCGCGCGAACTAGGGAGGCTCCTCCCTAGCCCTCGAGGCCAGTACCCTTCTTAGCTACACATCGCGCTACTCCTCGGCGTGAAGCCCAGGTTGTGATAGAACGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 3150-3562 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000349.1 Thermus scotoductus strain 37_S37 NODE_51_length_13478_cov_40.6713_ID_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3150 36 100.0 37 .................................... CCCAGGGCCACGGCCATTGCTGTAAGCCCTACCACTA 3223 36 100.0 37 .................................... TCGTCGTACTCCTTGTACATCCACTCCTCGTAGCTAA 3296 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3373 36 100.0 41 .................................... GATGAAGCGGTAGGCGGGGAGAAGGTTCCGGCGCACCTCGT 3450 36 100.0 41 .................................... TACCCTCGCACTGAGGGCATTCCTCGTACAGCTCAGCCGGG 3527 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 40 GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Left flank : GGAGCGCTTCCACCAGGAAGCCACCCACCCCCTGCGCTTCCGAAAGACCTACGCCGAGCTCCTGGACACCCAGGCGGCAAGGCTCAAGGCGGCCATAGTCAAGAGGGAACCCTACACGCCCTATTACCTAAAGTGACCTATTCACCTTTGGAAGCCCACTTGACACGCCGCAAAGGAATGGTATCGATTGGGTAAGTATTGGTCCGGTTCATCGCAAACGGTATAAAGCCAGGATCCGTTTGACCGAGTACACCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTGCTTATCGACCGCTCCTGCAGTGGCTTTGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATGTGTATATTCCAGCCTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : CCCAGGCCACCAGCCTGGGTATTTTGTTTTTATGAAGCGCCTCTATGCCATTGCCTACGACATCCCGGACGACAACCGCAGGGTCAAGATGGCTAACCTGTTGAAAAGCTACGGGGAGCGTGTGCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAAGAGCTTCTCAACGACCTGCGCACCCGAGCCAGAAAGGTGCTGGACCTCTCTCAGGATGCCCTGCGCATCTATCCCGTGTCGGGCGAGGTCCAGATTTTGGGCGTGGGGCGGGTTTACGAGCTGGAGGCCTTTGGGCTGGCCTAGGCCGTGTGCAGATGTCGCCCGGCCCCGGTTCCTTCTGTGGCATCCTAAGAATCATGCAAGACCTGGCTACCCTTTGGGAGGAGTACAAACAGGCGGTACGGGCAGGAGGGGATGCCGTGGGTCTTTACCGGGAGCGCGTCTGGCCTGCCCTGCTGGAACGCTGGCGGCAGGAACCCCCCGTCCACCCTTCGCCTCAGGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 1715-1077 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000363.1 Thermus scotoductus strain 37_S37 NODE_64_length_11824_cov_63.4234_ID_127, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1714 29 100.0 32 ............................. TCTTTGCGGCTTTCTGGTGGGGGGTTGCGGCT 1653 29 100.0 31 ............................. GAGGCAAAACCGGTTGAGAGGAGGGGGGCAC 1593 29 100.0 32 ............................. CTCCTGAGCCTAAGCCAGAGGAGAACCCGGAT 1532 29 100.0 32 ............................. CTGACCGATGACCCGATGGTGGATTACATCGG 1471 29 100.0 32 ............................. AACCCCCAACAGCTAGCCACCGAACCCTCGGT 1410 29 100.0 32 ............................. CTGGTCAAACAGTCTTCGTTTGGGCGCTATGT 1349 29 100.0 32 ............................. AGCTGGACTGGCTGATAGCCCTGCTTGAGGCC 1288 29 100.0 32 ............................. CGGCGTTGGGAGAGGAGGGTGTCCACCGGCCC 1227 29 100.0 32 ............................. CTGAACGATCTGTTGGCAAAGGGGTCCAGTGC 1166 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 1105 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGAACATGTACCTGGCACCCTATGCTTGGCTAACCAGAACCGGTTTCGGAATGTTGAGGGAGATCCCGGAGCACCTATTGGCCCTGGGGGTGGACCCGGTCACCGACAGGAAGCACTCCTGGGATGGACCCGAGATGGAGGCGGTGCCGGGCCACCCCCGGGTCCTGCGCCCCCTCAACTACAGCCCGGCCACCCCTAGGAAGGGCTTCGCGGTTTTAGAACAAGTTGGGAACCCATACCCATGTCCCCACCCTGGACACCCGGGTGCTGCCCAAAGGTACAGCCTACGTCTCCGACGTGGGGAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5602-4656 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELN01000045.1 Thermus scotoductus strain 37_S37 NODE_140_length_5638_cov_46.9702_ID_279, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5601 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 5540 29 100.0 32 ............................. CGCCCTGCATCCGTCACCTCACCAGAGGGGCA 5479 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 5418 29 100.0 31 ............................. GGCCTTCTTTTTGCTTCTTTGGGGAGAGGAC 5358 29 100.0 32 ............................. ATAATCCCAGATGGCCGGAACAGCCCAAAGAA 5297 29 100.0 32 ............................. CCCCCGTTGTTGATGAGGGCGGGCCTAGGGAA 5236 29 100.0 33 ............................. GCGCGCCTAGCCGTTTGCCACCGGATCGGGACC 5174 29 100.0 32 ............................. TTCCTCCACGATTTCCCCCAGGGGGCGGAGGC 5113 29 100.0 33 ............................. GATGTAGTCCCTGGCGTCCTGCACGATGGCCGC 5051 29 100.0 32 ............................. AGGCCGCGGAGCGCCGCGTAGAGAAGAAAACC 4990 29 100.0 32 ............................. TGGCTCCTGTCTCGCCTGGGCCGCCATCGTGG 4929 29 100.0 32 ............................. GAGCGCGGGATGTCCAGGGGGGAGCTTGCAAA 4868 29 100.0 33 ............................. GCCCTCATAAAGGGGAAGTCGGCCCAAACGCCG 4806 29 100.0 32 ............................. CTCCTGCTTGGGCCGGGGCCCCAGCCGAAGCG 4745 29 100.0 32 ............................. GTGTCATAGAGGCTAGCCACAGAGGAATCAAA 4684 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : GCCCGAGGCCGCGGAGCGCCGCGTAGAGAAGAAAAC # Right flank : CCTATCCATACGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGCTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAGGGGAACCAGGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //