Array 1 56342-57479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSN010000012.1 Limnothrix sp. FACHB-881 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 56342 36 100.0 40 .................................... GCTTGGCTTTTGCAGTCGCTAAAAACACAGCGCTAGGAGC 56418 36 100.0 40 .................................... TCTATATCCTTGGTGATTCCCAGTTCCTTCGCGCGACTCA 56494 36 100.0 39 .................................... TGTACAAAGATCCGGGGTAAATAGGATCAGCCCCCTTGA 56569 36 97.2 34 ..............A..................... GGAGAATACCTTTGTAGTATCGCGATTGATTTTA 56639 36 100.0 37 .................................... GCATTGGCTCCTACCTGGAAGATCCTAGGTTAGCTCA 56712 36 100.0 36 .................................... AGGTGTCCCGAATTCTTGATGGTTTTGCCAACTACC 56784 36 100.0 38 .................................... AACAAACAGCCGGGAGTCTCTGCTTTTTGGTTCCGCGT 56858 36 100.0 38 .................................... TACACCACCCAAGACCGAACCGCTCCCGTTCTGCCTGA 56932 36 100.0 40 .................................... TCAAAACCTCCTTATGTAGGGGTCTAGTCGTGTTTTTTGG 57008 36 100.0 39 .................................... ATGTCAGCGCTGGTCACTTCCGAGGGGAACTCGTACGAG 57083 36 100.0 38 .................................... GTGACACCCTTGTGTGGAATGCCGCGACCGCACGATTT 57157 36 100.0 34 .................................... GAAAACTTGGCCAACGCGATCGAGCTGGCTAATG 57227 36 100.0 37 .................................... CTGGTGAACCGGCCCCACCTGGGAACGGCTCAGGTGA 57300 36 100.0 35 .................................... CAACCAATCAAGCTGTAGCGGCCATCAACCAAGAG 57371 36 100.0 37 .................................... CACTTGCAGCCAAAGCCGTTTGGCGGATAGTTCGTCG 57444 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 99.8 38 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TCGGCCAGGGTCGATTTACCGTGGTCAATGTGCGCCACGATCGAGAAGTTACGGATGCGCGAAACGGGAACGTCGGTCATAGGAGCGGAACGGTAGGGCAAACGGGGAAAGGAAGCCAACCGCATTGTAACGAATTCCATAGCGTCTAATTCGCCTTGGCGCTCTGGATTGTTTGGGGCCGATGGAGCGATCGGGCTTTCGGCATGGATCGCGATCGGGCGGGAGCGATCGGGCGGGCTTGTTGCCCAAAAACAAGCACCTGGGGCGGTGGCGGCGGGGCGAGGGGCTGGAAGGGTGCAGAATGTTGATGGGGGTTGGGTTTGGCGATTTTTGGGATCTTTGGAGATGCTTGTAAATGGCTGAAAGGGTGATGGGGCAAGGGTTGGGCGATCGGCAAAAGGGCGATCGGGGGTGATGTTTTGGCAGATGCGGGGCGATCGGCTAAGATGCTTGTAAGGTTCCATTTCGGCGCTTGTCCCGTAAGGGTTTCAAGCGGCGGG # Right flank : CAGCACCGCACAGCACCGCACAGCACCGAAAAACACTCGTTTCAGCCCTGTTCTAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCGGAGTTTTAACCCGCCGATTCATACCTGGCTTACTCTCCGCCGCTCTTTGCCTCCGCTTCGTCACCCCCCGATCGCCTGTGATCTGTCACCATGCCACCAATTGATTCAGAAAACGCCCATCTTTCGCGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCCGTAACCTTCGTCTGGAAAGTCTTGTTCTAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGACGATCATAGGTTGCTGAAATATTTGATCGCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 6349-1344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSN010000016.1 Limnothrix sp. FACHB-881 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 6348 36 100.0 39 .................................... CGAGGAAGTTGCACAGGGAAGGAAGTAGGACAGGGTACT 6273 36 100.0 36 .................................... ATTAACCGATTTTGTTGATCGCTGTTTGGCTTTGGG 6201 36 100.0 35 .................................... CCAAGCCGATTCACAGAACTTAAGGAAATCAGCCT 6130 36 100.0 34 .................................... TCAAAAGGAATTGGAGACCCAATCGCAGATTCAC 6060 36 100.0 36 .................................... CACTGAAGGTCTATAGATGTAGAGCTTAAGATGCAG 5988 36 100.0 36 .................................... TATCCCATTGAGACTTGTAGGCATCCTGAAAGCCAG 5916 36 100.0 39 .................................... TAATTACTCCCCTTTCGAGTTTGTAGCCTTTAAATTCAG 5841 36 100.0 36 .................................... GTTCGCCGCTTGCAAGTCACGTGGGACTACGAATAC 5769 36 100.0 40 .................................... TGATGGCTATGAATTTTTTCGGCTTTAGCGTTTAGTGCGG 5693 36 100.0 41 .................................... ACCAGTAATTCAGTAATAAGTGCCAAATGATGGATATAGAA 5616 36 100.0 45 .................................... AGTGGGGCCCTACATGAACGAAATGGATGCCATTGTTCAGAAAAG 5535 36 100.0 39 .................................... TTGGCGGCTGTAGTTCATGGCGATTTTACTGCTGAAGAA 5460 36 100.0 35 .................................... GTTCAATCACGTCCAGAATCGTTCCGTTTCTTTTC 5389 36 100.0 38 .................................... TTGGATTGGTGGATGTGCGCCCAACACCTTGGGGCCCG 5315 36 100.0 38 .................................... TTGAAATCAACATCGATACTGCAAAGATATTCCCCTAT 5241 36 100.0 48 .................................... TTGGGAGCGAAGCAACGAAAGGTTAAGTTAGTACCAGCTCTTTCAGAG 5157 36 100.0 39 .................................... TCCTACTCTGACAGCAGCATCGATACTTGGGAGTTTAAG 5082 36 100.0 35 .................................... ACCTGGATAAGCGCTTGCCACACCCCGGAACGACA 5011 36 100.0 35 .................................... TGCCGAGCGGTGGATGCCTTACTGGCGGTGTTTGA 4940 36 100.0 40 .................................... AGGCGATCGATCTTGGTAGAAACCAGATCGCTGCGACTCA 4864 36 100.0 40 .................................... AGAAACCCAGGAACGCCTGGGGTTATGGACTTTCAGATAA 4788 36 100.0 39 .................................... AGTCCCAAATTTCAATGCCCAGTCGCACTGATCAATGAG 4713 36 100.0 39 .................................... CGTATCTTTACGACCGCCCATTTCTATTGGGACTTCTGA 4638 36 100.0 39 .................................... GGCACACCGTTGGTTGGATCCTCGCAACCGCTCACGGAA 4563 36 100.0 37 .................................... GCGGCGCTGAAGTCCTCGAACAAACAGCTAGTTCCAA 4490 36 100.0 49 .................................... TTGTCGTTGCCGCTTGCCTTGACCCATGTTGCTATCGCTATCGTTTCGT 4405 36 100.0 37 .................................... CACACTCCGAGAGGTGGTTCTTGTCCGAACCTGGAAA 4332 36 100.0 35 .................................... TCGTTGCAGAGGTGGTTTTGACCGCACCCGTTCCG 4261 36 100.0 38 .................................... TCCGCTAAAGGTGGAAGCCTACGGACGGGCGGCTGAAC 4187 36 100.0 36 .................................... GAGTCACAAGGAACGATGATGCGATGAATTTCTGGG 4115 36 100.0 37 .................................... TCCGAATCCCACATGGCGGTGACGTAGCATTCGGGAA 4042 36 100.0 33 .................................... AATAGCACCATCCTCAAAGTAGACAATCAATAA 3973 36 100.0 37 .................................... CGCGCTGTTGGGCCGCTGAACCTGTTTGGCAAGCTAG 3900 36 100.0 38 .................................... ACCAATCACCGCCCCGATTGCACTGCCTACAAACCGGA 3826 36 100.0 37 .................................... CAGGTTTGTGTGATTGCGCTCACCAACATCCAGCCAA 3753 36 100.0 36 .................................... AACGTTAGCCAGGGCAGCCAGGATGTCAAAGTTAAA 3681 36 100.0 40 .................................... TCAGCACTCGCCCGCAACTTAAGTGCCCAATTTTTGGCTT 3605 36 100.0 40 .................................... CTCGGAGTGTCCGAGGAAGGGGTGACTCTTGGGCGAACGA 3529 36 100.0 39 .................................... TCGGACGCGATCGCCACCCGTGTGATCTCAATTACACTC 3454 36 100.0 31 .................................... ATCGCAAACAAAAATAGGCGGAATGGGTCGG 3387 36 100.0 37 .................................... GCAAGCTGCCGACGTTCATCTCCTTGGGTTTTGTCGC 3314 36 100.0 37 .................................... GAAGAAAAGATGAGGGTAGCGAGTTTAGGACTCGCAA 3241 36 100.0 36 .................................... TAGGTCAATCTCCCTGATCAATTCTGTGCCGATTTT 3169 36 100.0 37 .................................... CGCCCGGTCGGCCGTGGTGTGGCGTTGCCGGTGGAAC 3096 36 100.0 40 .................................... TCAACGATCGCGTTAATGGCGTGAAGCGTAGAATCGATGG 3020 36 100.0 42 .................................... CCACACCGCCACTGCAAATAGCCACATTTTGCCCCGATCGCG 2942 36 100.0 36 .................................... TCCACCGACGATCGGCTAGTGATTGTTCCAGGTCTT 2870 36 100.0 37 .................................... CGGGAAGATCGCGGGTTCCGATGATGGCTAGACGCAT 2797 36 100.0 36 .................................... TGGTCTGAGCGTAGGTGGCCTCGTAAACTGCAACGT 2725 36 100.0 40 .................................... GTTAGTTGTTGGGCTACCTTATGAGACATGATCTTTCCTA 2649 36 100.0 36 .................................... CAAAATGGCATTCATCATCAGAGCGTTTACTCACTA 2577 36 100.0 35 .................................... CACGTCTCCGCCAGCGCCTCGAAATCGAACTTGGC 2506 36 100.0 40 .................................... CCGCCAAACAGGTCAACGAAATAGCCGGAGGGGATGCCTA 2430 36 97.2 32 .........G.......................... TCAAGACGCGGGACGGGGACAAGAGGAAATCA 2362 36 100.0 40 .................................... ACCTAGAACAGCCTTGCGAACTGTTTTTCCTGAGTAGCTC 2286 36 100.0 45 .................................... TTCCGGGAACTACCGCACTGACTTCGATTGCACCGCCTTCGCCAT 2205 36 100.0 35 .................................... CGCGTCTACTTCCCAGAACAGTTTGGAGCGCTGGG 2134 36 100.0 41 .................................... CTGGCCGCTCCTGTCCCACGCCGTGCCATCCGATTGTTTGG 2057 36 100.0 40 .................................... AAGCGCCGTAGCGTTGTAGCGACCATCCGAGAGGTAGTGA 1981 36 100.0 40 .................................... TCAAGCAGGAAGTCATCGGGGCTGACCTTGTTCGCGGCAT 1905 36 100.0 40 .................................... AATTTCAACCAATTGAAACTTAAGAAGCGGTAGACGTTCA 1829 36 100.0 41 .................................... TCCGTCGCGGTCGAAATATGTTGAACTGCAGTGGACCCTGC 1752 36 100.0 35 .................................... GGGATACACCTCAGAGGCGATCGCCTCTAGAACGG 1681 36 97.2 38 ..................C................. TCAGCGTTGTCAATCGCCTCAAAACCATCTTCGTGATC 1607 36 97.2 41 ..................C................. GTCATCACGTTTGACCAGCGGCAGATTATTCGACTCCGAGC 1530 36 100.0 39 .................................... TAGAGCTTTTTCGCCACGATGCGGATCTCCTCAATCCGC 1455 36 100.0 40 .................................... ACTTGAACCTGAACCTCAATCTGGCGAGCGGTCGTTCCGT 1379 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 68 36 99.9 38 GGCCCCACTCGCTGGGGCACCCACTTGATTGGAAAC # Left flank : CGCCTGCGAACCTAAGCGGCCGAACCTGTGTTTTATGTGGTTGCTTACGACAGTCCAAATCAGAAGCGGCGCAGCAAAATTGCGGCGACCTTGGAGGGCTATGGCCAGCGGGTGCAATACAGCGTGTTTGAGTGCTATCTCTCTCCGAGTCACTATGCCCAACTGCGGCGGCGGCTTCGCAAGTGGTTTAACCCGGAGGAGGATTCGATTCGGTTTTATCCCTTATCGAGTCAAATGCTGGCCCAGGTGGAGGTTTGGGGCGGGCGGCCCCTGTCTTCGCCGCCGGGATCGGTCATTTTGTAACGCGATGTATCGGAAATCTACAACCTGGGGCGATCGGCTGGAACCCGCATTCTGTCGTGTAGGTTTTGGATCGGTTGTGGGGCAAGGGTTTTGGGGTTTTTCCACAGATAAAATGTTTGGGTTTTGTCCGGGTCTGAGAGGGGTTGTAGATCTAGCCACTTGTAACCCTTATGCAGCAAGGGTTAGTTTAGGGGGGA # Right flank : TCGCAAAAACCGATCCCGCGTTGCGCAATCGCATTGATTGGCCCCGTCCCTCGGGGCCAACCCCCACCATCCGCCCCCAAAACCGATCGCCCCAATCACCCCGCCGCTCCAAATTAAGCCAGGGTTAATCAACCGTTTGCGAGCTACGATCGCCCTAAGGACAGATCCACCCCCAGCGATCGAGCGAGGAAAAGCCATGGGTAGCCGTAGGGTGCATGGGAGCACGCTCGGCCGTCAATGATCGTTGCCCCTAATCTCCCATGCACCGCCACCCATGTCGCATTCACCGACCATCCCCGATCGGTTGAGTGGCGCTCAATTCTCGGTGCATGGGAGTACAAATCAACCATTTCGTGACCCCTTGGCCTTGCTCCCATGCACCCTACCCGTCGGCCATTGACGCAGGCAAGCAACTCGCGATCCCCAGGGGCGATCGCCCCATCCCAAGACCCGCGCTACCATTGAAACAACGCAATCCTGAACGTCCTGCACCCACGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCCCACTCGCTGGGGCACCCACTTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 7011-10750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSN010000014.1 Limnothrix sp. FACHB-881 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 7011 37 100.0 36 ..................................... CGACGACACCCGCGTCAACTCCTGCTAGGACAATAG 7084 37 100.0 37 ..................................... TTTAGGGATGGCCGTTGGGATCGACAGCGCTGCAATC 7158 37 100.0 36 ..................................... AGGTAAGTGTATGGGCGTGCATAACCCATCGCTGAT 7231 37 97.3 34 .........................A........... CTGAAATGGGCCAGTGGACGGGTGGTTATCCTGC 7302 37 100.0 36 ..................................... AGTATGCCCAGCAAGAGCAAGGCCCGATGAGGACGA 7375 37 97.3 38 ..................A.................. CCAGAGTTGTCAGCAATTACCAACTCTTTTTCCGCCCC 7450 37 100.0 37 ..................................... TTTGAGCGATCGGGCGAGTTGGCATTGGGCCCGATAA 7524 37 100.0 36 ..................................... CAACAGCTTGCGCGTGGTGTGGCCACTCAGGCGACG 7597 37 100.0 38 ..................................... CGGTTTCTGGGTCATGGCGATCGACAAACTTGCTCCAG 7672 37 100.0 38 ..................................... GATAAACGCACCGGGGTTTGAGTCTAGGTCGAAATGCC 7747 37 100.0 35 ..................................... AGGATCTAGAGCTGGTTGGTAGCGCAGTTACTTTG 7819 37 100.0 33 ..................................... CGGGGTTGCGGTGAGCCTGAGTCGCAATCGTAG 7889 37 100.0 35 ..................................... AGGGGAAATCGTCTTAAATTTGCGGCTAGAGCGCT 7961 36 97.3 36 ...............-..................... CCAATCGTCTGGGGTCGTTTCTTGGGGCTTGCGCTT 8033 37 100.0 34 ..................................... CGGGCCGCGGCCACCGCCCTCGGAATTGCCCAAG 8104 37 100.0 36 ..................................... ACCTGGTGCAAGATGCCAAGGGATACAAGCCGGTCG 8177 37 100.0 34 ..................................... AGGCTGGTGGTGTGGATGTTCTGGTCACCGATCA 8248 37 97.3 36 ..................A.................. GTCTATCCTGAGACAATGGAATTGGTCAAACAGTTG 8321 37 97.3 38 ....T................................ ACCCGGCCATGGTGGCCTCTTACGCCCTGAGCTATCCC 8396 37 100.0 38 ..................................... AAGTTGTCGTACCAGAAGAGTACGTTGATTCTGTCAAG 8471 37 100.0 37 ..................................... AAGCTCAGGGCAACCGCTGGCATGGGATGGATGCAAT 8545 37 100.0 36 ..................................... TTAAAACGCTTGGATAACTCATCAGCAACCCGTGCA 8618 37 100.0 38 ..................................... AAGCGTATTACCACGCACCGCAACAGCATCGCCTTTGG 8693 37 100.0 35 ..................................... GGTGATTGATAAGTCGAATTTATATAAATATCTAA 8765 37 100.0 33 ..................................... CACCTGGGCCGCCACCGCCGTTTGGGTGTCTTG 8835 37 100.0 37 ..................................... GACGGCCCGCTTGTTACCGCGAACCAATCCACCAAAC 8909 37 100.0 34 ..................................... TATATATAGGGGCTGAAAGGCTTGAAACTTCGTT 8980 37 100.0 39 ..................................... CACACCAAACAAGGCGTTGAATAAAACATCATTGTCCTC 9056 37 100.0 36 ..................................... TGCCCACCACCGCGCCTTACCAACATCTCCTCGCAT 9129 37 97.3 37 ...............T..................... ACCGGGCAAGTTTACCGAGTCTATTCAGGCGATCGGT 9203 37 100.0 36 ..................................... ATGGCTTCCAGGGTTTTGAGTGGCTGATTTTTCGGC 9276 37 100.0 35 ..................................... TCAATGCCCTTGAGCCAATCCTCAAACTTTTGGGC 9348 37 100.0 39 ..................................... CGAGTTGATTAACGATCGCTAATCTGTCAGGCGATCGCC 9424 37 100.0 35 ..................................... TTCTAGGCGTGGGTCGATCGGTGCAATTGCTACTG 9496 37 100.0 39 ..................................... ACCTTTTGGTGTGCAAGGGGTTCGAGCCGGGGCGATCGG 9572 37 100.0 36 ..................................... CCGATCGGCTTTTCCGTTGGCCTCGCCATCAGCGCG 9645 37 100.0 36 ..................................... CCACTGTTGCCACCCGATCGCCAATCCCAGGTTGGG 9718 37 100.0 36 ..................................... CATTGATCCATTGCTGAATCGCTAAGGCTTCGGGTG 9791 37 100.0 35 ..................................... GATCACCATGGCCGCGTTGTTGATCGTGCTGCGAT 9863 37 100.0 35 ..................................... CTTGCCCCCAAGTTGGTCTCGAAAGCATCCATCAA 9935 37 100.0 36 ..................................... GCAAACTTCCGAGAGAGATAGCCCATGCTCAGGCTC 10008 37 100.0 35 ..................................... CCGATCTGGCCACCTGGTTGCGCGGCTCTGGCCGC 10080 37 97.3 37 A.................................... CGGCTTGCCAATCAACCCAAGAGAAGCGTCCTCCTCC 10154 37 100.0 35 ..................................... CAAACCCCGCGCGGGCGGGGTGGCTAGGGTTTACG 10226 37 97.3 37 .............T....................... AGCGACTCCTTGCGCGGCGCTGGCCAGGTCAAAAGCA 10300 37 100.0 37 ..................................... ACGATCGGCGCTCGAAAACGTGTTAAACATGGATCAA 10374 37 100.0 34 ..................................... CAATCAACAGCCCTACAACCTTTCTAACGGTCAG 10445 37 89.2 156 ..............................A.C..GA ACCCCGCCGCAAGCGGACGGGGTATGGAATTGGATCTGCTCCCAAACCTGAAGATTTGGATTGCAGGTTTTTTTGTTTTCGCCGCAGAGCGGCGGGGAATCTGACCCATACTCGATTGAAACAATGGACACCGGGCGATCGTACAGGAAGTTTTAG 10638 37 100.0 39 ..................................... ACTTTTTGGACGGCTGAGGCAATCTATGACCCAAAATCA 10714 37 91.9 0 ................................A.T.G | ========== ====== ====== ====== ===================================== ============================================================================================================================================================ ================== 50 37 99.2 39 GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Left flank : AATCACACGAGTAGCAGTTGCTGACGCGAAGGATCGTGAAAAGCTACAAACGATCGGGCGCAAAACCAAAATCTCTTACGGTCTATATCGAGGCTATGGTTTCTTTTCGGCTCCTTTGGCCAAGCAAACCGGTGTGACCGATCGGGACTTGGAACTGTTTTGGGAAGCGGTTCAAGGAATGTTTGAAGTGGTGGATCGATCGGCTAGTCGCGGGCTAATGGCTGTGCGTGGGTTATATATCTTTTCCCATGAAAATCCATTGGGTAATGCACCAGCCCACAAATTGTTCGATCGCATTTCGGTGCAAAAGCGTCCTGAGGTCGATACACCGCGATCGTTCGATCACTACGTCATTGAACTAGACGAAACAAATTGGCCCCAAGGAGTCACCCTAACCAAGCTGATTGAAGGCTAATTAGGCCTTGGCGGAAGCCAACTCTCAACCTAGTTGGCTTCCGCACATTTTCTTATCTTTTGGTTCAGGCCAGTTCGTAAACCCT # Right flank : GTCGCTTTATAAATCAGCTCTAAAACCGGGTCGGCTTTAGATTCTCTTTATGAGTTAGCTCCTAGGTTTGAACTGGGCTAAAAACCGGCATTTCGGTTAGTTCAAGCTCATGGTGATCAGCCCCTGTTGCCCCAGCAGCACTTCACGCAACAGGCTCACCAACCCAACCCAAATGATCGGGCTGATGTCCACGCCGCCGATCGGGGGGACGATCGCGCGGGTCACCTTCAAAAAGGGTTCCGTCGGAGTCACCGCCAACTTAAAGGGCAACTTTTGGGCATCCACCTGGGGATACCAAGTCAGCACGATTCGGACAATGAACAACAAAATGAACAGACCCAACAGCAGGCTCAGGGCCCACGATCCAATCACAACGGTACTCATGCCGAACTTGGGGTAGAAATTGAGAAGGGCGGGCGATCGGCCTCGGGGGGATGGCTAGCGCAAAATCTGGCTCAGAGGGCAGCGCCCGGCCCAGATGCCACCCAACCCCGCTCGGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.00,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : NA //