Array 1 11584-9661 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOV01000004.1 Salmonella enterica strain BCW_1535 NODE_4_length_235280_cov_3.00271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11583 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 11522 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 11461 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 11400 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 11339 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 11278 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 11217 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 11156 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 11095 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 11034 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 10973 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 10912 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 10851 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 10790 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 10729 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 10668 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 10607 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 10546 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 10485 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 10424 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 10363 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 10302 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 10241 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 10180 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 10119 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 10058 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 9997 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 9935 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 9874 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 9813 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 9751 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 9690 29 96.6 0 A............................ | A [9663] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30724-28255 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOV01000004.1 Salmonella enterica strain BCW_1535 NODE_4_length_235280_cov_3.00271, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30723 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 30662 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 30601 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 30540 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 30479 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 30418 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 30357 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 30296 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 30235 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 30174 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 30113 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 30052 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 29991 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 29930 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 29868 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 29807 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 29746 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 29685 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 29624 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 29563 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 29502 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 29441 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 29380 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 29319 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 29258 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 29197 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 29136 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 29075 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 29014 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 28953 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 28892 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 28831 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 28770 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 28709 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 28648 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 28587 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 28526 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 28465 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 28404 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 28343 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 28282 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //