Array 1 217078-219565 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUNG01000006.1 Marinomonas pollencensis strain CECT 7375 Ga0244612_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 217078 28 100.0 32 ............................ AAAACCGGTCAAGAAACTAAGAAGCGTAATCA 217138 28 100.0 32 ............................ AGCACTTGGCTAAGCTCTGGACCTGCCAATCT 217198 28 100.0 32 ............................ CACATGATCCAGGAGGATGCCGAACGCTTTAC 217258 28 100.0 32 ............................ AGGTGTGCTTTGTCACGTGTTTCTTACGATAG 217318 28 100.0 32 ............................ ATGTCAGTCCTCGTCTATGATGTCGATAAACA 217378 28 100.0 32 ............................ ATGTATGTCAACCGTGTTGACTTCGTTACAGG 217438 28 100.0 32 ............................ ACGTCCTCTACAGAGTCATATCTCATGTTAGA 217498 28 100.0 32 ............................ CTACTATGCTAATGATTTGTGGGAAGCGTCCT 217558 28 100.0 32 ............................ AATCAGATGACACTCCCGGAACACTGCCTGCT 217618 28 100.0 32 ............................ ACGAATAGCTTGTCGATTGGCTTTGACTGCTG 217678 28 100.0 32 ............................ ACTGTGTCAACTAATGGAGCAGCTATTGCTAC 217738 28 100.0 32 ............................ AGAAACAGGCGATCCAGATCTGGACGAGATCA 217798 28 100.0 32 ............................ AGTCCCAAGCGGAATCAATAGATCCAAAATAG 217858 28 100.0 32 ............................ GTGGGGTAACGTGAGTTCCATCAACTCTGTGT 217918 28 100.0 32 ............................ GCTCGCGCTTGGCCTTTGAGCCCTCGCCCGAA 217978 28 100.0 32 ............................ TACTGTCCCACGGCTTAGCGCCTATTTGTCTG 218038 28 100.0 32 ............................ GATAAGCGGCTGACTGGCCCAATGCCATTCCC 218098 28 100.0 32 ............................ TGGTGTAATCCAACTGGAAAATGACGACTACA 218158 28 100.0 32 ............................ GTTCCTGATGAGACGCCAGAAAAAATCAAGGA 218218 28 100.0 32 ............................ ATTGTCGTATTTAAATCTCGCTGGATTATCGA 218278 28 100.0 32 ............................ ATACTGGTGTCCAGTAGAGGGAAAGATAGGAT 218338 28 100.0 32 ............................ TTGGGCGACTGGGCGTGTTGGCCATGCTGCAA 218398 28 100.0 32 ............................ AAACTCAGATAACACCGTTTCTCTATCTACTG 218458 28 100.0 32 ............................ CGAATCATCAACCATCGAAACAGGCGAGCCGA 218518 28 100.0 32 ............................ CGTCCACGCTTATGCCCCCCGTACTCCCGCCG 218578 28 100.0 32 ............................ GAGCAGGCTGTTATTCAGGTGTTAAATGCAAA 218638 28 100.0 32 ............................ AATATATGCATCAAGTTCACCACTGACATAAG 218698 28 100.0 32 ............................ AATACCTATTTCTTTTGTCGACTTGGTGTTTG 218758 28 100.0 32 ............................ AGCCGAACGAAAAGGGCGCTTTCGTGTTGAAA 218818 28 100.0 32 ............................ TGAGCACGAATTCCGAGCAGTGGCGGCGGCAG 218878 28 100.0 32 ............................ TTCGATGTATTAACTATATCGCACCACTTAAT 218938 28 100.0 32 ............................ TGTAGAAGGTGGTAAATCAGGCAACCCTTCGG 218998 28 100.0 32 ............................ TGATCCCGTCGGAAATCGGTAAACTCGCTACG 219058 28 100.0 32 ............................ TTAACGCCAGCAAGTGGAAAGGTAACTTACCT 219118 28 100.0 32 ............................ TGAGCCGACATCGACCCATCAGAAAGACAAAA 219178 28 100.0 32 ............................ GCCATTGCCCGTGGCGTGGAGGGTTGAAACAA 219238 28 100.0 32 ............................ TCATCAGGTAGCAACGCATCATGATCAAGCAT 219298 28 100.0 32 ............................ CATTTCGGGTGTCACTCCGACAAGAAGTTTTA 219358 28 100.0 32 ............................ GTCAGGGTCAAGGAGTCAAAATGATACAAGCG 219418 28 100.0 32 ............................ GCCATTGCCCGTGGCGTGGAGGGTTGAAACAA 219478 28 100.0 32 ............................ TCATCAGGTAGCAACGCATCATGATCAAGCAT 219538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 100.0 32 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : TTTAGAAGAGCTTGAAGCCTTGCCTTGGCGACGTGGTTTAGGCGATTTCACTGTCGTTACTAAAATAGCGCAAGTACCAAGTACTAATGAGTTTTGCCTTGTTAAGCGAGTTCATGTGAAAAGCAATGCCGACCGATTGCGTCGCCGAGCAATGAAACGCCATGGTATTTCCTATGAAGAATCAGTGAAACGAATTCCGCAAGAAGTTGAAAAGCAATTGGAGCTGCCTTTTGTCAGAATCAAAAGCAAATCAACAGGAGATCAACAGTTTCCATTGTTTATTCAGCAAACCATAACGACATCAAAAGGCGAAGTGGCGAACTTTTCCAAATACGGATTAAGCGCAACCAGTGCCTTGCCTTGGTTTTAACCCTTTTTTTTTGCGCTAATGCCAAGCCCTTATAAATAGGGGCTTGGCATTTTTCATTTAGAAAAAGGTGTTTTCACTAGAAAATCACAAAGCTCTTTAACAATCAGATAGTTAATGCTAGTTTCCTCTA # Right flank : ACATTTCGGGTGTCACTCCGACAAGAAGTTTTACTTCACCGCCGAACAGGCGGCTTAGAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGCATCTTCACCGCCGAACAGGCGGCTTAGAAACATTTCGGGTGTCACTCCGACAAGAAGTTTTACTTCACCGCCGAACAGGCGGCTTAGAAAGACATTTGAAGCGGCCAATTTTTTGACTTCATCTTCACCGCCGAACAGGCGGCTTAGAAATACAAACACCCATTTGCAACCATTATTGATGGCTTCACCGCCGAACAGGCGGCTTAGAAATGTACCCATCAAGGAAGTGGAGGCGCCTTAGAAAATATTGTTGTTCCATATTCAGACACCCAAAGTCTTCACCGCCGAACAGGCGGCTTAGAAATCAAATTAAATATGATGATTTAAATCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 219793-222618 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUNG01000006.1 Marinomonas pollencensis strain CECT 7375 Ga0244612_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================== ================== 219793 28 100.0 32 ............................ GACATTTGAAGCGGCCAATTTTTTGACTTCAT 219853 28 100.0 32 ............................ TACAAACACCCATTTGCAACCATTATTGATGG 219913 28 100.0 66 ............................ TGTACCCATCAAGGAAGTGGAGGCGCCTTAGAAAATATTGTTGTTCCATATTCAGACACCCAAAGT 220007 28 100.0 32 ............................ TCAAATTAAATATGATGATTTAAATCCTATTA 220067 28 100.0 32 ............................ AAAGGTGTCACGGTTGCGGTCACTGCCATGAC 220127 28 100.0 32 ............................ AGTGAAACATGCCAGGCGCGTGCGGCGAGTCG 220187 28 100.0 32 ............................ CACCAATAATTCCTGCCATGTCTGTTGCATCT 220247 28 100.0 32 ............................ TGTCAGATCCGCGACGCCCAGGGCGTACATAT 220307 28 100.0 32 ............................ CTATGACGCGTCTGTACGCGAATGTAATTACT 220367 28 96.4 32 ............G............... AAAGCCATCCTCTGCGCTCAGCATTAGCGAAT 220427 28 100.0 32 ............................ CTATGACGCGTCTGTACGCGAATGTAATTACT 220487 28 100.0 32 ............................ AAAGCCATCCTCTGCGCTCAGCATTAGCGAAT 220547 28 100.0 32 ............................ AAAGCGTGGAACTCAATTAAATCAATGTTTGC 220607 28 100.0 32 ............................ AATATCAAAGTAGTTTTTAAGCCACTCGACAG 220667 28 100.0 33 ............................ TAACCCACGATGAAACAGAAATAGTCAGCATCA 220728 28 100.0 32 ............................ GTCAGGGTCAAGGAGTCAAAATGATACAAGCG 220788 28 100.0 32 ............................ CCGACGCAAGCAAAAGCGAAGCTGCCTCCCGA 220848 28 100.0 32 ............................ ACATCAAGAGAATGGCTAGAACGGTTGTATTC 220908 28 100.0 32 ............................ AGCGGGTTTTATGTGGCCGTACCAATGCGAAG 220968 28 100.0 32 ............................ TCCTGCAAGAAGATGGTGCGCCTAATGGTATT 221028 28 100.0 32 ............................ TTACAGAGGAGGAAGTGGACAAGATGAGCGAA 221088 28 100.0 32 ............................ ACAGTGGCAGGTTCATAGATGTCGAACTGTTC 221148 28 100.0 32 ............................ AACTGGTGTGAATAGCTTATGGGCTGCATCAG 221208 28 100.0 32 ............................ AATCGTGTTAGTTGCCTGTCTATCTGAGTTGA 221268 28 100.0 32 ............................ ACTCTGCGCTAAGATTAGAGTAAGAATCTGTT 221328 28 100.0 33 ............................ CTGTGAAGTTAGGTAGGAGCTTTGGACATTGAA 221389 28 100.0 32 ............................ TAGGCAGAACACTTCCGTAAGGTAAGAGTCTT 221449 28 100.0 32 ............................ AAGCATTGGGCTATGCGGCCAGCGTAAACGGA 221509 28 100.0 32 ............................ TCTGCCGTCGTTGCGGGCGCTGGTCTCATGTA 221569 28 100.0 32 ............................ GTACCACTGCATTGATTGCGGTTGGAAGGGGC 221629 28 96.4 32 .......T.................... TCAGCCATAATGGATAAAACAAATTCGGCTTG 221689 28 100.0 32 ............................ CTGCGGCCCGCGCGACGGAGACGGTCACACCA 221749 28 100.0 32 ............................ ATTTCGAACATTTCTTTCGCATATTCGATGAT 221809 28 100.0 32 ............................ TGTCGTCATTACCCCTGAAATGGTTGGTCATA 221869 28 100.0 32 ............................ AAAAAGGTAGAGACGAACACGATCTCTAAAGC 221929 28 96.4 32 .............G.............. TTTTGTCTTGCAGAATTTTTTATCTTCTTTAG 221989 28 100.0 32 ............................ AGTAAACGAGTGGCCGCCATCCGAGTAAAAAT 222049 28 100.0 32 ............................ TAGATCGCGAAGATGAAATTGTTGAATTCATG 222109 28 100.0 32 ............................ CTCAAAATGAGGGGGTAGGCAATTTTCGTCAA 222169 28 100.0 32 ............................ TTTGTCTTTTACTGACAAAGCGCGAATGTGCT 222229 28 100.0 34 ............................ CATGCATCAACCCAACAAGCTCCTCTTCCTTCAT 222291 28 96.4 32 ............C............... CTAGGGAACGAACCCTTGACACCCTCGCCAAA 222351 28 100.0 32 ............................ CTAGGGAACGAACCCTTGACACCCTCGCCAAA 222411 28 100.0 32 ............................ AGCAATAGATCCAAAGATCGAACAGCCATGCC 222471 28 100.0 32 ............................ AAAGTCTGAATCTGTTTAGTACCCACAGAGAG 222531 28 100.0 32 ............................ CTCTCTGAATCTTACGTTGATTGCTGCCTCAC 222591 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================================== ================== 47 28 99.7 33 CTTCACCGCCGAACAGGCGGCTTAGAAA # Left flank : AGCATCTTCACCGCCGAACAGGCGGCTTAGAAACATTTCGGGTGTCACTCCGACAAGAAGTTTTACTTCACCGCCGAACAGGCGGCTTAGAAAGTCAGGGTCAAGGAGTCAAAATGATACAAGCGCTTCACCGCCGAACAGGCGGCTTAGAAAGCCATTGCCCGTGGCGTGGAGGGTTGAAACAACTTCACCGCCGAACAGGCGGCTTAGAAATCATCAGGTAGCAACGCATCATGATCAAGCATCTTCACCGCCGAACAGGCGGCTTAGAAACATTTCGGGTGTCACTCCGACAAGAAGTTTTACTTCACCGCCGAACAGGCGGCTTAGAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAGCATCTTCACCGCCGAACAGGCGGCTTAGAAACATTTCGGGTGTCACTCCGACAAGAAGTTTTA # Right flank : AATCATAGAAGGTTCGAGATCCCGAACTTGTTGATCGCTTCATGGTCAGAAGCCGCGGGCTGGCGATAGAGTAAGCCGACGCTTTCTCTATCGGGCCGTTGGGGTGAGTTAGTCTGCTTTATGTGTGGTTAGGCGAGCCATTGTTGTTGGTAATAGCGTTCAATGGTGTCGTCTTGCCAGCTAAATAGATAAAGCCAATTATTGTCGATCAGGTGTCTGACGGTGTCGTGTTTGGCGACTATGTCTGCGATGGCGTGCTTTGGTGCTGCGATATAGACCGCCAGTCTAACCGGTGTGTGCATCCAGTTTTTACCGTCGCTGATCGATTGCAAGGGGAGTCCAATTCGCAAATCGCCTCCGTTGCCTTCAAACACGCCAATATTACCGCCCACGGCGTTGTGCAGTACTTTATTGCCGCTACCAAATTTAAAGTGGTCCGTGACGGATAGGTTGTATTGCATGTTTATCCAGTGAGTCACCAACATAGGCGCGGTTAATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCGAACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //