Array 1 107973-106309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNV01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51286 N51286_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107972 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107911 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107850 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107789 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107722 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107661 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107600 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107539 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107478 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107417 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107356 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107295 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107234 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107173 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107112 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107051 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106990 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106929 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106868 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106765 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106704 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106643 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106582 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106521 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106460 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106399 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106338 29 96.6 0 A............................ | A [106311] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125357-124231 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNV01000013.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51286 N51286_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125356 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125295 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125234 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125173 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125112 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125051 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124990 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 124929 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 124868 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124807 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124746 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124685 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124624 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124563 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124502 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124441 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124380 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124319 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124258 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //