Array 1 2443964-2444468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067341.1 Lysinibacillus agricola strain FJAT-51161 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2443964 33 100.0 34 ................................. TATTCCGTTCTCCACAACTTCTAGAGGAAATTCT 2444031 33 100.0 34 ................................. AAAATGGAACAATATGAGAGTCAAAGTAATACAA 2444098 33 100.0 34 ................................. CTGGTTGTAAGCATCTAGTGAAATAATACCTAAC 2444165 33 100.0 35 ................................. AACTTGTTTAGTGGTTGTTATTGATAGAACATTTC 2444233 33 100.0 34 ................................. AATCCGTTGTGGAATGTCGATGCTAAAACTGATG 2444300 33 100.0 36 ................................. TGGAGTCACTCGTAAGAAGTGAAGTTGTGGAAAAGC 2444369 33 87.9 34 ....G............AG......T....... TTGGCATCAAGGGTATTACAGTGATATGTATGAT 2444436 32 81.8 0 ......G...A...A....-...C........A | T [2444465] ========== ====== ====== ====== ================================= ==================================== ================== 8 33 96.2 35 GTCTCTTCTCGTATGAGGAGAGTGGATTGAAAT # Left flank : CTTCAGACGACACAAAAGAAATAAAATCAGCGAAAGCTACACCAAGAGAAGAACAACAATCAGCGACTGCAACTGACGACGCAACATCAAGCTCAAGCACTGTATGGATTGTAGCAATTATCGCATTACTAGCTGTCATCCTCGGCTTCGTATTTATGAAACGAAAAAAATAATGAAAATCGAAATAAACCAGCAATTGACGAGAAAATCTTGTCATTGCTGGTTTTTTTTGTGGCTTAGAAAATAGGATTAAATCAAGGGAATATATTATACTGATTAAATGTAAAATAATAGTTTTAATTTAGGTTTATTATACAATGTTTTGTTATAATTAGGTAAGGCGCGAATAGCAAGCGAACATAACTTTATAGAGAGATTCGCACCGAAATTCATTTAAATATGATAGCGTTAATTTTGTCGTTTTATTCCTTAAAACCTATGCGCATTAGATATTATGATATAAAAATGATGTATTTGTTATGGATTTATTAAGTTTTGCT # Right flank : AAATAAATAAAATAAGAAGGTGAATATAAATGTTGGTAAAAGACTTTATTGCGCATATTCGAACTAGTGACGGAGCAGAGCAATTGTTAGTAGATCATTTAAAAGAGGTGCAATATATTGCTGAAGAAATCGGACAGAAAATAGGGCTTAAGCATGTAACAGGACTTGCAGGTATGTTGCATGATATGGGCAAATTTAGTGATGCGTTTCAGGAATATATTCGCGATGCGGTGGCAAATCCTTCTGATCCACCAAAACGTGGGAGTGTTGATCACTCGACTGCTGGTGGCAAATTTTTGATGGAGCATTTTCAAAGAGTTAATCCAGTTTCTCCTTTTTTAGTGGAGTGTGTGGCAAATGCTATTTTTTCACATCATGGACAGTTACTAGATATGATAGATATGGATGGACAGTCGCCTTTTGTGAATCGGCTGACATCTGAGAAGAATATTGATTTTTCACTTGTAAAGCAACGTTTTTTACAGCATATGTATGATTTA # Questionable array : NO Score: 9.07 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTCTCGTATGAGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCTCTTCTCGTATGAGGAGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2452921-2459577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067341.1 Lysinibacillus agricola strain FJAT-51161 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2452921 33 100.0 38 ................................. GTTCGTCGTCTCGTAAGTTCATCAACGACGTTAACACA 2452992 33 100.0 35 ................................. GTTCAGTTATTTGTTAAATAGAATGATAAACTTTG 2453060 33 100.0 36 ................................. CAAAATACGTTTGTACATTGGAGGCGACAGGATGAT 2453129 33 100.0 33 ................................. CGCATTTATCAGTGGATGGCTTTTATTATACGC 2453195 33 100.0 35 ................................. GATTTTATCAATGCATTGGAAGTGAGTCGGAACGA 2453263 33 100.0 35 ................................. CTAATTTAAGACTTGCTGCAAACAGTGGAATAAAC 2453331 33 100.0 34 ................................. TCCTAAACCATCGATAAAACTCGTGATTAATATA 2453398 33 100.0 34 ................................. GCATCTTTTAAAGAGTAGTTTAACTTTCCATTTA 2453465 33 100.0 34 ................................. ATCCTCCAGGTATAACACTAGCTTGCGGTAAATC 2453532 33 100.0 33 ................................. TACTTTGTCAATGTCTTTTAATCGTTCAATGAC 2453598 33 100.0 33 ................................. TTATCACCTATTTCCACTATTAATAGTTTTTTC 2453664 33 100.0 36 ................................. AAATCTAATAGAAGAACTACTAGTTTTCGGGACAAG 2453733 33 100.0 34 ................................. AATATCTCCATCATCTTGACGTGCTGAACGACCA 2453800 33 100.0 35 ................................. TTTTATAGAATTGATAAGGAAGGATGAGTGAAAAT 2453868 33 100.0 35 ................................. AGGAGCAGTGGCGACAATCGGCGGTGTTGAATACG 2453936 33 100.0 35 ................................. AATAGATGATATTGTTATGAATAAATTTGAAGAAC 2454004 33 100.0 36 ................................. ATTTAATGATATACAAGACGCAAAGCTGGTGGACGT 2454073 33 100.0 37 ................................. TATTCGTCAGTTTGTTGAGATGGCAGACCAGGACGAC 2454143 33 100.0 34 ................................. ATCGACCATACGTCCATCAACTGACACGTTACGA 2454210 33 100.0 33 ................................. ATCTTAGCGAAGGCGGTGTCTGATGGATGGACT 2454276 33 100.0 35 ................................. CTTTTTCATTGCCCTGGGACTTTATGGCGTTGCTA 2454344 33 100.0 35 ................................. GTTGTAAGCATCCTCTACACGGTCATAGTGGTCTC 2454412 33 100.0 34 ................................. CTAACTTAGTATAACATTAATCAATTTTCTTTGC 2454479 33 100.0 36 ................................. TCTGCAAATATCTATTGCATAGTATCGTAATATCTC 2454548 33 100.0 33 ................................. ACCTGTTAATAAATTTGTTACGATAGTTTGTAG 2454614 33 100.0 37 ................................. AATACTATCTTTGTAGTTATCGTAAAAAATCGAAAAC 2454684 33 100.0 35 ................................. CACAGAGGACGGAGAGGGCAATTTGAGATATTGGT 2454752 33 100.0 33 ................................. TCCTAAATCACTTAAATTCTTTCTCAATTTAAC 2454818 33 100.0 34 ................................. TGGCACTGGGCCTAAGTGGGATCAAAAAGCAAAG 2454885 33 100.0 33 ................................. TACCATTAAAGACATACTAGATGGCGATGTAGC 2454951 33 100.0 35 ................................. AAACGTTTCGATAATTTGGCAGTCTGATAATTTTT 2455019 33 100.0 35 ................................. ATTTCAATGCTGCAAGCGTCACTGATGCCCCACGT 2455087 33 100.0 34 ................................. CATTGCCCATCTACCAGCACCTACCGCGCCTTTC 2455154 33 100.0 36 ................................. ACGTAATTCATCATCCATGTACTCAGCTAATACATC 2455223 33 100.0 35 ................................. TTAGAAGAACATATCTTATGTGATCCACGTATCAA 2455291 33 100.0 35 ................................. CAACCATAAATCATAGTTATTGACCATGGATAACA 2455359 33 100.0 35 ................................. TCAATGCTTCCGCTTGTGATTTAACCTCTTGCTTC 2455427 33 100.0 35 ................................. TAAGGTAGTTGCGAGTTTATTGGCAGATTCATTTA 2455495 33 100.0 35 ................................. TTCATCGAATACAGGTTTAGCCACCGTAACATCTT 2455563 33 100.0 35 ................................. TTGATTGTAAAAACGAAAAGTAAAAATTAACGCAG 2455631 33 100.0 33 ................................. AAGAGAAAGCGCAAAGAGAAATGGAGTTAATGC 2455697 33 100.0 34 ................................. ATTGTTTTAGATTTAGAAGTTACTAAGAGTTTTG 2455764 33 100.0 34 ................................. GTTATCTAGACGAAGATGATGAACTTTATGAAGA 2455831 33 100.0 34 ................................. CTCAAATATAGCTCATAAAAATAATATTTTTGTT 2455898 33 100.0 34 ................................. CTCTTGACCAAGAACGTGGATAGCAAAGTAGTCT 2455965 33 100.0 33 ................................. TTCCATTAAAGAAAGTTCATCCAAAGATTTTTT 2456031 33 100.0 35 ................................. TATTAAATTGTATCAATAATGGCAAGTGTTGTCAG 2456099 33 100.0 35 ................................. TTTCGTGGACACGCCAACGAGCAAGGATCGGTATT 2456167 33 100.0 34 ................................. ATTGTGGCAAGAAAAATCTAGTCTAGCACACTCG 2456234 33 100.0 35 ................................. GCCTGTCCATAGACCAATCTGTTTGAACACTCTCG 2456302 33 100.0 34 ................................. GATATCTACAATGATTGAAGCAGAAATTACTGGT 2456369 33 100.0 35 ................................. TATAAGGTTTTCAAATATACGTCTTAGGTAAACAA 2456437 33 100.0 35 ................................. GCCTGTCCATAGACCAATCTGTTTGAACACTCTCG 2456505 33 100.0 34 ................................. GATATCTACAATGATTGAAGCAGAAATTACTGGT 2456572 33 100.0 35 ................................. TATAAGGTTTTCAAATATACGTCTTAGGTAAACAA 2456640 33 100.0 35 ................................. GCGTTAAGGAATATCAACGTAACTCCAGGAGAGCA 2456708 33 100.0 36 ................................. ACCTACTTTTTTTCAATAGTGTCTCCAAAGGTGGTC 2456777 33 100.0 33 ................................. ATGCTTAACAGTGATTTTCAAATTTTTATTGAT 2456843 33 100.0 35 ................................. TGGTACTTGAACAGTTAAATTTACTTGTAATTGTT 2456911 33 100.0 36 ................................. AGCCGTACCATCTTTATTAACTATCATGGCTTTACC 2456980 33 100.0 36 ................................. ATGTGCACATACTACACGTTGGTCATCGCATGAAAG 2457049 33 100.0 34 ................................. TAGTATTGTACCAGTTGTTTTTGGTACAGCACCT 2457116 33 100.0 34 ................................. ATTTAGAAGTGCTTCATCTGGACTAAAGGATTTA 2457183 33 100.0 35 ................................. TTTAAATCTACAACTAACTAAATATTGCAACTGGA 2457251 33 100.0 36 ................................. CGTACATTAGTTGATCCTATGGACATCGATGAAACA 2457320 33 100.0 34 ................................. AATAGCTGATAATCCAATGGAAAAAGATGTACTA 2457387 33 100.0 35 ................................. GATCGAGTACAAGCCATTCTTACTAAACGTCCGAA 2457455 33 100.0 33 ................................. AAGGTAAGTAAATCTTGCTCATCCTTAAACGTT 2457521 33 100.0 36 ................................. CCAACGGCTTGGGCTATGGATGTCTAACGCACCTTG 2457590 33 100.0 34 ................................. AAACCATTGTTTCAGTTTCCGTTTAGTGGTCCTT 2457657 33 100.0 34 ................................. AGCTGTTTAATATCAGCCTGTAATGCGTCTATTT 2457724 33 100.0 35 ................................. AGTACAGGTAAGGGTGCCGGAGGAGGTAGTGCTCC 2457792 33 100.0 35 ................................. TATAAGTACCACCTAAAGAAACTCTAACAGCCTGT 2457860 33 100.0 33 ................................. TTGAATGAATTCGTAATTTTCGTCGCCAGTACC 2457926 33 100.0 34 ................................. CCTGTAAAATCAAACAGTACAGCAGCAATGTCAT 2457993 33 100.0 38 ................................. CACCAATGCGCCAAAAGGGACATCATCAGCGTTTTCCC 2458064 33 100.0 34 ................................. TATCAGCTTTACCGTAGACACTAGCTAAATCACT 2458131 33 100.0 33 ................................. TGCCACTCTGTACCAATCCGTATAATCTAGCAT 2458197 33 100.0 34 ................................. TACTATAGTCCAAATGGACAAATGGAAATGGAAG 2458264 33 100.0 33 ................................. GTATGAGTACGATGAATACATGTTGTTTAAGCA 2458330 33 100.0 35 ................................. TTTAAAGCTAACGACCTGAGCAAGGTTGAAGAAAT 2458398 33 100.0 34 ................................. TATGAGTACAAGAATTAGTTATCCAGTAGAAGTT 2458465 33 100.0 34 ................................. ATATGATAGTGAACATACATTTGTAAAAGAATCA 2458532 33 100.0 36 ................................. TATACTTTCTGTTGCAATTTCCACAAGCTGTGTAAC 2458601 33 100.0 33 ................................. CGTGTCGGCATGTTTGATGGTGAAAAATATTAT 2458667 33 100.0 34 ................................. CAGAAGGTTTTTACACAGTAATTGCATCATGCAT 2458734 33 100.0 34 ................................. AACAATGACAGGAGATAAGATTTTAAAAATTGAT 2458801 33 100.0 34 ................................. AACTGGACGTTTTATTTAGAGAATTTCAAAAAGC 2458868 33 100.0 35 ................................. TCAACTAAGACACCATTTATAGTTTTTCTACCTAA 2458936 33 100.0 34 ................................. AGCAGGAACGAAATGCTCTACTGTATACGTAAAT 2459003 33 100.0 34 ................................. AGCAGGAACGAAATGCTCTACTGTATACGTAAAT 2459070 33 100.0 34 ................................. GCAACTAGAAAGGAAGAAGTATATGGGAGAAAAT 2459137 33 97.0 35 ..T.............................. TTTTTTATATTGGAAGGTTTTAAATTAACATCCCA 2459205 33 100.0 34 ................................. CTTAAACCCTGTAGGCGTTACATAATTAGGTATA 2459272 33 100.0 36 ................................. TGGACCAGGTACGAACCATAAAATTCTTGGGTGTGC 2459341 33 100.0 34 ................................. TAATTTTTCTTTTGGTCTTGGTGCTGTGCTGCCA 2459408 33 97.0 36 ........T........................ ACTAGGCATAATCATGTCACTTGTGGAGGGCATAAC 2459477 33 100.0 35 ................................. TGGTAACGTGGTCCAGATAAAAATGAAGCACGATT 2459545 33 93.9 0 .............A..G................ | ========== ====== ====== ====== ================================= ====================================== ================== 99 33 99.9 35 GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Left flank : GGGATATAGAAGAATATCCACCTTTTTTATGGAAATGAGGGGCTTACATGTTAGTATTAGTCACTTACGATGTTGTCACGAAAACACCTATTGGCCGAAAGCGATTACGAAAGGTTGCAAAAATATGTGAAAATTTCGGAATACGTGTGCAAAATTCAGTTTTTGAGTGTGTAGTAGATGCCACTCAGTTTAAGCAACTACAACTCGCACTACAGGAGATTATTGATGTGGAAGAAGATAGTCTACGTTTCTATCAGCTAGGCAACAATTACAAATCAAAGGTTATTCATATCGGAGCAAAAGAAACATTCAATGTTGAAGATACAATAATTTTATAATCGGTGCGGATGCCAAGCAAACATAAATTCCTAGAGAGATCCGCACCAAATTTTGATGAAAATTCAATCATCAGAAATGGTAAGAATGGTATGAAAGAATTAGAATGAAAAGATAAATAGCAAAAATCGTTTAGAGTTATTATTTTTTTATGAATTTTTGCA # Right flank : TCTGTACCAGCTTGAACTAAAAGAAAACATTCTTTATTTATTAGCAATTGTCTGCTTGCACAATAACGGTTGTAAATTATTTGTACAAAATTGAATAATAGGAAGTTCAATGGGGATATAAATAGAATAAAACCGATGATTTATTTCATGAGTTCATGAAAAAGCTTCGATAAGGAGTGTGGAGATGGCGACACTTGTTGTAAAGAGAAGTATAATGCACCGATACCAAAGCATTGGGCAGGCGATTCAAGAGGCAGAGCAGGGAGATTTTATTGAAATTCGAGAAGGGATATATGAAGAAAGCTTCGAGATTACCAAAAGGCTTACACTTTATGGGGTGGGCAATGTGACAATTAAAGGTGGCGTGTTTATTCGCTATCAAACACATGTGAATATGCGAAATCTGCGCTTTACACAAGGGCAAGGTATTTATGTAAAAGGAGACTTACAGCTTGAAAACTGTATAATTGAGCAGCAAATGGTGCAAGCCCAAGTGACCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //