Array 1 3929-5020 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVZV01000040.1 Neisseria meningitidis strain MRSN430955 MRSN430955_contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3929 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 3995 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 4061 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 4127 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 4193 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 4259 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 4325 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 4391 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 4457 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 4523 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 4589 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 4655 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 4721 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 4787 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 4853 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 4919 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 4985 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //