Array 1 7550-1871 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZB01000098.1 Campylobacter concisus strain AAUH-12HCf 1105811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7549 30 100.0 35 .............................. CTTAAATATGGACACGTTAGAGCCTATGAGCTTGT 7484 30 100.0 37 .............................. TTGATTGCAGGATAGGCTTTAACGCCGAAAATGTCCG 7417 30 100.0 34 .............................. TTAGCTTTATTTGTGTGGCTATAATTTACGTTAC 7353 30 100.0 34 .............................. AGGATCTTGAAGCACAAATCACAAGCAAAATAAA 7289 30 100.0 38 .............................. CAAATCTTGTATTCACATCATTGTAAGCCTCGCACCAG 7221 30 100.0 33 .............................. ATCAAAGATGAAAATATGAAAAGTTGGTTTGAA 7158 30 100.0 37 .............................. CACCTTCAAAACGTGTAAAACGCATAAAATTATTTAC 7091 30 100.0 37 .............................. AGCCAAATAGTAGGTGGTGGCGTAGAGGAGCGATCTA 7024 30 100.0 36 .............................. TAACCTAAACGCTAATAATCGCAACCAAATAGCCAA 6958 30 100.0 34 .............................. CCGCAAAATGTAAGCTTTGTGACGGCTGGAGTGG 6894 30 100.0 37 .............................. AGAAAGCAAGCACGCAGTATAAGCACGTCAGTATCTC 6827 30 100.0 36 .............................. GAGCTAACGTTGATGATTTTGTTTAGGTCTGCATTT 6761 30 100.0 34 .............................. GCAGTAGTTTTTTGTTTATGCCGCTAAGAACTAA 6697 30 100.0 34 .............................. AGCTATACAACTACCTACAAACAAACGCTTAAAA 6633 30 100.0 34 .............................. ACAAACTTCCTCAAGACGACCAAGCCAAGATGGT 6569 30 100.0 34 .............................. TCTCAGGCTTTTGTTTGGTAGAGCAAAAGATGAA 6505 30 100.0 37 .............................. GGTTATGTTTCTTTCTTGTATTCAGTGTTAAACACTA 6438 30 100.0 36 .............................. ATAATCCCAGTGGCTACGTGATGAAATATATTCAAA 6372 30 100.0 36 .............................. GCGTGATCGTGCTTAGGATATACTCATCATCGTATA 6306 30 100.0 35 .............................. ATAGCATTAATAGGCAAAGGGATCATAAATCCGCC 6241 30 100.0 35 .............................. ATAGCATTAATAGGCAAAGGGATCATAAATCCGCC 6176 30 100.0 32 .............................. TGGTAGCGAAGTTTGGGCGCAAGGCAAAGAGG 6114 30 100.0 34 .............................. GTGGCTCATATTTTGGCAATGCAGGGGGCTTTAA 6050 30 100.0 38 .............................. ACTACTGGGATTAATTTTAGTGCTACTTGTGTAGCAAT 5982 30 100.0 36 .............................. ATCGGAGCGGTTGCAACGGCAGCTAGCGGGCTAATA 5916 30 100.0 34 .............................. TAGAGCATCTACCAACTTCATTCGTAGCAAAAAC 5852 30 100.0 34 .............................. ATAATAACCATTTTAGAAAAAGTGACAGCACGAA 5788 30 100.0 36 .............................. GATTGCATCTTGCAACTTCTTTTGTAACAAAAACAA 5722 30 100.0 34 .............................. AAGTTTTAGCTGGTGTTGCGGTTGTTTCTGCATC 5658 30 100.0 35 .............................. CGTTATAGCTCTTTCTTTTGTCAAATAGGTTTTAA 5593 30 100.0 36 .............................. AAATTGCTAAACCAAAAAGCATTTAAAACTCGCTCG 5527 30 100.0 35 .............................. AAGATAATATCTCGCCAGTTCGCATGCCTGTAAAA 5462 30 100.0 37 .............................. AAAGCTGATCTAGCTGTTGAAAAGCTTAACGCTCAAA 5395 30 96.7 35 ..................A........... CCTTAAATTTTAAATACATCATTTTTAGAGGATTT 5330 30 100.0 38 .............................. ATATTACTGATCTGCGCCTGATAGTTTGCTCGTTCTAT 5262 30 100.0 33 .............................. ATTGTAAAAGGCTTAAAATCATTTGAATTCTTT 5199 30 100.0 36 .............................. ACGTAATAGTTAAAAATACTGGCACTTGAAAATTAT 5133 30 100.0 38 .............................. CAATCAGTCAAACGATGATAAATAACACTGAAGTGAAT 5065 30 100.0 36 .............................. TTATAGAACTCATCAAAGAAGAGCAAAGAGCCTCCG 4999 30 100.0 36 .............................. ATATGCAGATGGTAAAAAGAGACGTAAAAAGCCTTT 4933 30 100.0 37 .............................. CAAGAAGTAATAAAAAAATCAGGCGGAAAAGTAAAAA 4866 30 100.0 36 .............................. GTATTGGTGTGCCAACTCCTACCTTTGAAACTCTTG 4800 30 100.0 37 .............................. AAAGAGCCGTGAAATACTACGGTGAAAAACTAGACCA 4733 30 100.0 34 .............................. TAACAATTCAAGCCTTGATATGTAAAGCCAAATT 4669 30 100.0 37 .............................. TGACCTAGAGGACGCAATAGCGATGCACGAGGTTATT 4602 30 100.0 37 .............................. CTTTCTATTTTACAAAAGAGAACCGCTTTAGCCTCGC 4535 30 100.0 37 .............................. TAAGAAAGTCTGGGACGTTTCTATTGAAAATAAGAAC 4468 30 100.0 38 .............................. TTGAGTAGTATTTTTTCAATGCAAGATCGCACTCTTTA 4400 30 100.0 36 .............................. TATTTATCTCATTACGCAAGACTTAACTTTAGTCAA 4334 30 100.0 38 .............................. AAGGGTTGTACCAGCTTCGTTCTGCTCCATCCTTAGCC 4266 30 100.0 35 .............................. CTAATCGACGATCTAATGACCTATTTAGACGGCGG 4201 30 100.0 36 .............................. CTCAATTGCAACTATCCAAAATAGTGGAAGTAAGAC 4135 30 100.0 34 .............................. AAAAATTACGGCTACAAACACAACAAGACCACTC 4071 30 100.0 36 .............................. AGATAGCATCCGTCTCATCAAGTCGCCTTTTGATCC 4005 30 100.0 36 .............................. AAATCATAAACCAAACGAATATCGAGAAAAAGTAAT 3939 30 100.0 35 .............................. GATATTGACAAGAAAGCACTTTTTAAAGCCCCTGA 3874 30 100.0 35 .............................. GGGCTTTAGGGCGTGAGCCTAGAGGGAATTCAAGG 3809 30 100.0 37 .............................. TCTTGCATTTGTTTAAAAAAGCTATCCACTGCGTCCG 3742 30 100.0 35 .............................. AATGCGACGTCCGCTATTTACGGAACGCATTACGA 3677 30 100.0 36 .............................. GTTTCTACACCAGTCCCACCGCCACCGCCAGAACCA 3611 30 100.0 35 .............................. CAAAAGTAAAAGCTAAAGCAAAAAACAAAACATAA 3546 30 100.0 34 .............................. TGAGTTTTAAAATGTGTTTGAATGAGCTTTTTGA 3482 30 100.0 34 .............................. TTTGTCAGAATTTCTCTTTATTTCAAACTCAATC 3418 30 100.0 38 .............................. AGAATATATTAAGAGGACGCTTCAGCGACGCTCAAACC 3350 30 100.0 36 .............................. AATCCTTTTAGACTTTGATTAACGACTGGGATTAGC 3284 30 100.0 37 .............................. GCTCGACCTCATAGCCAAGCGCCGCCATCGCATCTAA 3217 30 100.0 38 .............................. TCTCGATAGCGTTTAGCTCTTTTTTAGGTGGTGCTTTA 3149 30 100.0 36 .............................. TGAGAGGATTTGTTTAAATGAAATTTATGAGCTGGA 3083 30 100.0 35 .............................. TTGTCAAATTTTGGAAGCTCGATAAAATCACAAGG 3018 30 100.0 36 .............................. AACTAAGTGACGCCATAAGTTTTGATAGCGTCTTAA 2952 30 100.0 34 .............................. GCAAGACCAAGCCTAAAATCAAAAACAAAAAAAG 2888 30 100.0 35 .............................. CTCAAGCATTGAAGACGATTATATTGATGAAAATA 2823 30 100.0 35 .............................. GTGGCATTTCTTGGACGTTGTGTTTAATATACACT 2758 30 100.0 36 .............................. GAAGTTGCGGATTAACTCCGCTAGTATAAAGTCTTA 2692 30 100.0 38 .............................. CTATCATAATGCACCCCCTTAAAATCCGTATTTCTCTA 2624 30 100.0 38 .............................. CTTTCAACGTGTGCGAGGCAAAGCTCAATAACATCACT 2556 30 96.7 36 ...G.......................... AAATTCCATATAGTGAAAAGTCGCACTCCAGATTAT 2490 30 96.7 35 ...G.......................... GCATATGCAGATCCGCTAAATGCAACTAAGACTAA 2425 30 96.7 35 ...G.......................... GACCACGACGTAAGTTTTGAAAACGCTATCGGCAA 2360 30 100.0 36 .............................. AGTATCTTTTTTCAGTAGAGCAAGACAGCGAAATAA 2294 30 100.0 37 .............................. TAGGTAGCTATATCACTTCTAAGAGTTGAAGGGCTTA 2227 30 96.7 33 ................C............. TTACCGATAATGAGTGCGTGGCGTATATAGTTT 2164 30 100.0 37 .............................. TGATCTTTTAAACCTATAAGACGAACTTCATCGATCA 2097 30 96.7 37 ...............A.............. GTGTAAGGCAACTCATCTATTGCGTTTTGAAGCATAC 2030 30 100.0 35 .............................. AATCTATCAAGAGACCTTATAATCACGTCCTCAAA 1965 30 100.0 35 .............................. TCTTCGTGATCAATATATTTCAGCCCCTTTTAATC 1900 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 87 30 99.8 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCGCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCACTAAGCCTACACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAGGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGTCTTTGCGAGACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGATTTAAGTGGGAGTGAAATCGCATTTTAATAAAACGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAGATATAGACTTCTTGCACCTAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : TTTAAAGTGACATACTTTTTAATCTCATCTTTACAAGATTAGATGGAGTTTTAAATCCTAAAAAAAAGATGTTCTTAAGTAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGATATATTAAATTATTAACATTAGTATGTATATTTTAAAATATTTCTAAAGAAGCTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGACGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAACAATACTTCAAAAGTGAAGTATCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //