Array 1 78970-83025 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG692714.1 Roseburia intestinalis L1-82 Scfld1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 78970 36 86.1 29 T..C..T..T...A...................... CGCTAGGATGTGATCTTGATACCGTGATT G,C [78974,78983] 79037 36 100.0 30 .................................... TCTTTGGAACAGGAATCACATCACCAGTCA 79103 36 100.0 30 .................................... TTCCTAGATTGTACATCATTCATAATGCGA 79169 36 100.0 29 .................................... TTTGGGAATTGCTCCGGAAATGACACCAT 79234 36 100.0 30 .................................... GAATTTTATTTTTTAGGAGGATTCAAAATG 79300 36 100.0 30 .................................... ACTACCATAAAACGCACCCTAAAGAGGTAA 79366 36 100.0 30 .................................... AAAATAAAGTTTCACTGCTTTTCCTCGCTT 79432 36 100.0 30 .................................... ATTTCCATTTTCAATATCTTTTATTTTAAC 79498 36 100.0 30 .................................... TTTCGACCGTGAAACTTTCAAATATTGGGG 79564 36 100.0 30 .................................... CGATGGCTGTAACGAGTTGCCTATATACAC 79630 36 100.0 30 .................................... AGATCGGGGATGTAAATGTGGCAGTCGGCT 79696 36 100.0 30 .................................... GCGGCATAATTAAACACCCGTACACTTACT 79762 36 100.0 30 .................................... AACACCTCTGCAACAAATTGCAACATTTTT 79828 36 100.0 29 .................................... TCATTAAGCGTTTTGAGGGTTTTCGTCCA 79893 36 100.0 30 .................................... CAAAAATGATAAATTTGACATGTACAGAGT 79959 36 100.0 30 .................................... GCGAAAAATATTTGACAATGGTGTAACAGT 80025 36 100.0 30 .................................... AGCATGTTAATTTTTATATTGCCGTGTTTA 80091 36 100.0 30 .................................... ACACAACGGCAAAACCGAGGAAGAAAAGAA 80157 36 100.0 30 .................................... AGAACGTGAACCCTATACCACTAAAGGGAA 80223 36 100.0 30 .................................... ACACTCATAGTCTGTGATTTGACCACAGAA 80289 36 100.0 29 .................................... TTGAAAAGAGAATATAACTCTTTTCTTCT 80354 36 100.0 30 .................................... ACGCACCTTTAATACCGTTAAGCAGTTTCA 80420 36 100.0 31 .................................... CTGTGCCAATAAACACATTGCTACATGATCT 80487 36 100.0 30 .................................... AACCCAAAACATTTTATGTGTTTCAGGATG 80553 36 100.0 30 .................................... GAACCAAAAGAATATTCTTGTCCACCGACC 80619 36 100.0 30 .................................... ATATTTTTCACGTTTATTTTACCGTGTTTT 80685 36 100.0 30 .................................... AATATGCATTTCAGAGAAGATTCCATTATT 80751 36 100.0 30 .................................... ATTTTGTCAAAGACAACACCTCCGTGTATA 80817 36 100.0 30 .................................... AATAAATTAGTCGGTTTGCGCGGTATCATT 80883 36 100.0 30 .................................... GGAGAGCATTATCGTAAAACTGATGGCAGG 80949 36 100.0 30 .................................... GTAATAGCTTTTATTATTTCTAAATCAGTA 81015 36 100.0 30 .................................... CACACCAAGACTTTTATCTCCATATTCAAT 81081 36 100.0 29 .................................... AAATTTTATGATTCAGAAGTAATGAGTGC 81146 36 100.0 30 .................................... TTATTATCCGCGCTTTACGTGCGTTCAATC 81212 36 100.0 30 .................................... ATTATTAAACGGTATGAGGGGTGCAGATTA 81278 36 100.0 29 .................................... TTCAAAAAGCGTTACCAGTCTGAAGCCAT 81343 36 100.0 30 .................................... TATAAAACCTCAAACCGTAAATTAAGTATC 81409 36 100.0 30 .................................... TCTATGGTTCGGTTGAACTTATGCGGTATC 81475 36 100.0 29 .................................... CGAGGCTGACTGTTCGTCCGGTGTTGCTG 81540 36 100.0 30 .................................... TGTCATCATCCGAGGCATACAAGAGCATTT 81606 36 100.0 30 .................................... AAAATCAATTTCGATTAATTTTATTGACTT 81672 36 100.0 30 .................................... TTTCATACTCAGCGTATTGCATTGTATTAG 81738 36 100.0 30 .................................... TTCATGACTTTACTGATATAATCGGGATCT 81804 36 100.0 30 .................................... TCTCAAACGTCAGATTCTCAAGCAAGTGGT 81870 36 100.0 30 .................................... CAATACAAGGGCATACGGAACGTCATATTG 81936 36 100.0 30 .................................... ACGACTGGGAACAGCGTTTGAATCCGTTCA 82002 36 100.0 30 .................................... TAACCGGATAAAGTCAGTGTATGTTTGGCT 82068 36 100.0 30 .................................... AATACGCCCACCATTCTCCCTGCTGGTTTA 82134 36 100.0 30 .................................... AAGTGTGGTACTACAGTTTATGCCTGATAT 82200 36 100.0 30 .................................... CTTTGTTACAAAAACAGGAGACTTTGTTTC 82266 36 100.0 30 .................................... ATGGCAAATGTTTTCTTTTCTTCCTCATTT 82332 36 100.0 30 .................................... ATTCTTTAAGCTCCATTCTTCGTAACGACA 82398 36 100.0 30 .................................... ACGCTGCTAAAAAATAAGGGACGCAAATTT 82464 36 100.0 29 .................................... TTTTGCATTTTTCTTTATGTTCTCCCTGC 82529 36 100.0 30 .................................... ATCAGCAGTCAATAATATTTCAACCTGCAC 82595 36 100.0 30 .................................... ATGTTTATTGTTGGTATGTCCGGTGGAGTT 82661 36 100.0 30 .................................... ATATAATTCGAACAATGCAAGTTAATATTT 82727 36 100.0 30 .................................... CCAACAGTACTTGCACCGTAGCCACTTTCT 82793 36 100.0 30 .................................... TTTAAAAAAATATTATTTAGACGGGTTTGA 82859 36 100.0 30 .................................... GAATCGTCAAGAGGCTCAAGAATGGAAAGT 82925 36 100.0 29 .................................... GGATGACGTTCATCCCGTATGACTATGAG 82990 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 99.8 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : TTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGCAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTTCCATAGTATGATATTAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATTGATTCCGGGGTGTCATCGAACGTTTTCGTTCCTAACATAATTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACTGATCCTTTTAAGGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAACTTACGAAATTTTGCGGCATCCTTTTTCTCTTTTGCAGTTACTACTGGCAGATCAAAAAATACTAACATTCTCATAAACCTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAGAGCACTACTGTAACTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 112296-111480 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG692714.1 Roseburia intestinalis L1-82 Scfld1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 112295 35 100.0 35 ................................... TTGCACAGCGTATGGAAAATCGGATTTACCGTTAT 112225 35 100.0 36 ................................... TGTACTGTTTGCCATTCCTAGAGTGACAAGCAAAAG 112154 35 97.1 36 .............C..................... TTCCACCGCCTTCCTAGTTATAGTATAGCGGATTTA 112083 35 97.1 36 .............C..................... TACGAAAGTACAACAGTGTGAGGCGCACTAGGTAAG 112012 35 97.1 36 .............C..................... TATGGTGAATATAGTGCGTTCATGTATCAATGGCAG 111941 35 100.0 38 ................................... TGTTCCAAATCTGCTTGCCACATTCGTCACGGTCATAT 111868 35 97.1 36 ...............T................... TTCCAAGTCGTTGTTACTTGACTTGTTTAAAGTGTA 111797 35 100.0 35 ................................... CCTATGCACTATTCTTTTATTGTATCAAGTTCTGT 111727 35 100.0 39 ................................... CTCTACATAACAGTCGCAAATACGGGAAAATGTGCAGTC 111653 35 94.3 36 ..............T......G............. CGTAAAGCCTTTATTCAATTATCAATGTACTTGAGA 111582 34 91.4 34 .........TA.........-.............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGA A [111559] 111513 34 88.6 0 ..................-.AG..........A.. | ========== ====== ====== ====== =================================== ======================================= ================== 12 35 96.9 36 ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Left flank : TTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGGTTACGGAAAATTTATATCGACGTTTGTTACATGATATTCCGGAGCTGATTGACCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGTTATGGAGAAGTCAGCCTGTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : CTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATTAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATACTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGATTTATGAGATCATAGAACGCCGGGAGCTTACCAAAGTACATGAATTTGATTATTTTTACGAGGATTTCAGGAAGGTGATCAGCCATATATATGAGACGATGGATGATTCAGATACACTGCTTTTAAATGTGTCATCCGGTACACCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Alternate repeat : ATTGAGATAAGAGCCCCCCGTAGAGGGGACGAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 114720-114042 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG692714.1 Roseburia intestinalis L1-82 Scfld1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 114719 36 97.2 34 ....................T............... GGTAGCTTTTTATTTGATGCTGCAGGTTTTGAAG 114649 36 97.2 33 ....................T............... AAAACATCAATATCAGCGTGTAAGTCCTCAAGT 114580 36 100.0 34 .................................... TCCGCGACAGCTCTGCAAAAAAATCATATCCCGG 114510 36 94.4 36 ....................TT.............. ATATTCTCCCTTCTGTGCAATAAAAAAGACAGCCTA 114438 36 100.0 37 .................................... TAGATCCGTGATGGTGTTTTAGCTTTTGCAATTTCGT 114365 36 100.0 37 .................................... TTGCCTGACTTATCTGTATAGTTAAAATCGGAGAATT 114292 36 100.0 37 .................................... CTGTCTCAGGAACTTTTCATCCGACTGGTCTAAACGG 114219 36 91.7 33 .....G...AG......................... TGACGCATTTCTTCTATTGTTGGCATAGTTGTT 114150 36 91.7 37 .....G...AG......................... ACTTCCTGAATTTCAGTCTTAGGAACTTCTACATAAA 114077 36 88.9 0 .....G...AG...........A............. | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 96.1 35 ATTGAAATATAAGAACCCCGAGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTGGGAAAAAATTATATTGTGCATAAACATACCAAAGATCTGCAGCTTAAGCTGGCACCGCATGCCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGATCGGTATGATCCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCTTGTGTTTGGAGAGGTGTAAGGGACAGG # Right flank : CTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATTTCCACTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAATCGTTTTCAGGTAAATTACAAGGATGGAATGATAAAAAGTATTCCAGCTGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGGGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATTCGCAATCAGGTTGTTGTTTTGCGTAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCAG # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATATAAGAACCCCGAGGAGGGGACGAGAAC # Alternate repeat : ATTGAGATAAGAGAACCCCGAGGAGGGGACGAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //