Array 1 36028-36596 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOL01000035.1 Providencia stuartii strain 4595 NODE_35_length_41275_cov_304.62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36028 28 100.0 33 ............................ TTTTGCAATTTATGACACATTAGAGAATCAATT 36089 28 100.0 32 ............................ TGTTTGAAATTCTTCCGCTTCGATAACATCGC 36149 28 100.0 32 ............................ ATCCTGCACCGTAGACCTCCCACCAATTGCCA 36209 28 100.0 32 ............................ TGACTTCGGGGCGATGTGATCATGGTGCGAGT 36269 28 100.0 32 ............................ ACTTAGCTCAGGAATTAGTAGTATTTATGTCA 36329 28 100.0 32 ............................ GGAAACTCATCTATCCCAAAATCGACATGATT 36389 28 100.0 32 ............................ AAGATGAAATTAATAAGAATGACGCAATGACA 36449 28 100.0 32 ............................ ATACAAACAAGGCTCACAACCTGCCTCAACTG 36509 28 100.0 32 ............................ TCTATAAACACGTTTTGGATAGCAATTATCTT 36569 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGTTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCACTCCCTGTAGCGCTGAATAAAAGGCGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTGTTTAAGTGAGGAGCATAAATGCTGGGTAACTCATGGATGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTTACTTGAAATTTATTTATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTCCATGATAATTTATA # Right flank : ACAGATAGCAGTGTGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACGTTCGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGTTGTAGAAACATGGGGTATGGGGCAATTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 202329-201821 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOL01000003.1 Providencia stuartii strain 4595 NODE_3_length_220969_cov_303.635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 202328 28 100.0 32 ............................ AGCAACTGATTTGATTACAGTTAGCCCACTAT 202268 28 100.0 32 ............................ TGATGGCATGTATCGAATTTCAGGGTCTTGAC 202208 28 100.0 32 ............................ AAGTTAGAGCCAGTTTTCTTTGTTGAGAACGG 202148 28 100.0 32 ............................ ATTTGGAGAAAAGGGGTTGTATCGCGTTAAGT 202088 28 100.0 32 ............................ TGCAATAGATGCGGATACATCCATAAAAGAAT 202028 28 100.0 32 ............................ TGATTGCCACCGTTACCGCCTAGCATCTGCAT 201968 28 100.0 32 ............................ TTTATGAGACTACCCAAGAAGCGATTATTGAT 201908 28 100.0 32 ............................ ATACGTTCTTTGGCAGTACCAATAATCGGTTG 201848 28 92.9 0 ..........A.............A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTATGGGTGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGACTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTCTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTGTTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : TACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTTAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTGCATGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGCGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAGCGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACAGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 208963-208274 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOL01000003.1 Providencia stuartii strain 4595 NODE_3_length_220969_cov_303.635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 208962 28 100.0 32 ............................ ATTCATCAAAGTCTAATCGCTGGCGCTTAATT 208902 28 100.0 32 ............................ TGATGGATGCGGGGAAGCGAGGTTATGCTTCT 208842 28 100.0 32 ............................ GCTCATCAAGCGGCAAATTAGCAGCAACGCCA 208782 28 100.0 32 ............................ TAGTACTAATGCTACGCAAAATGAACATCTAG 208722 28 100.0 32 ............................ GGAAAAGCTAAATTTGGTGATTTCTTTAACTC 208662 28 100.0 32 ............................ TATCATCATCGCGGCACCAATCATGGCCACAC 208602 28 100.0 33 ............................ TTCTACACAGAGCAGCATTTGGATCTGATCTTC 208541 28 100.0 32 ............................ ATTGTAAAAGTAAAATCTGGTGTAGCTACCTT 208481 28 100.0 32 ............................ AAACCATCTTTGAACTGAAAAATAAACATTAT 208421 28 100.0 32 ............................ AATATATTCAGAATATCGATCACTCATGGAAT 208361 28 100.0 32 ............................ TGTCTAACTCTCGGGTATGTAACTCCTGAAGC 208301 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTCTCATCAAAAGAGCCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGTTAAAAGAGAACCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTATGTCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : TTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAGGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 125987-126435 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHOL01000004.1 Providencia stuartii strain 4595 NODE_4_length_212916_cov_310.271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 125987 28 100.0 32 ............................ TCATTAAGCGCAACCATCATTATCCTAACTTC 126047 28 100.0 32 ............................ ATCGAAATCGGGCGCAGGAACATCAGGAAGCC 126107 28 100.0 32 ............................ TGCATCTGGATGCGGTTCTGTTGCTACTTCAT 126167 28 100.0 33 ............................ GTTAATTGGTCTACAACAGGCGGTAAGTTAAGT 126228 28 100.0 32 ............................ TATCGAGCAGTAGAGCATGGAGAATATGCAAA 126288 28 100.0 32 ............................ GTGCTGATACCAATCAGGCAGTGTGAACTCAA 126348 28 100.0 32 ............................ AAAAGCTGATTCAATCTCCATGTTTGTAGGTA 126408 28 92.9 0 .....................C..A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTTGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAGGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCTCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCGGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATACCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGTGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAACTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGGATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGTAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGCGAGATGATAGGCTGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //