Array 1 7691-5411 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQQ01000006.1 Listeria monocytogenes strain BCW_4302 PROKKA_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7690 36 100.0 30 .................................... TAATCGCGGCACCAATACCACCTAATGCCC 7624 36 100.0 30 .................................... GTGTCCAAAATGTGAACTTTCTTACGTTTG 7558 36 100.0 30 .................................... GGAAGCCATGCTTACGATTACCAACGCCAT 7492 36 100.0 30 .................................... CGTGGGTCTTTCGTGTCTAAACCTTTGTTT 7426 36 100.0 30 .................................... TGTTTATTGGATTAATGTGCTATGTGGTCA 7360 36 100.0 30 .................................... ATGGACAAGTTTATAAAAATCTAAATGTAA 7294 36 100.0 30 .................................... TGGAACAATGGTAATGGTACACAAGGTATT 7228 36 100.0 30 .................................... TTCCCTAGTGTAGCCCTTGTTGGAAAGTCA 7162 36 100.0 30 .................................... TTACTTACAGTCAAGACCTAGCATTTATGG 7096 36 100.0 30 .................................... AGCAAATGAACTATATATCAGATTTGGAGA 7030 36 100.0 30 .................................... CCTTTCTTCTAATAATCGCTCTCTTGCTTC 6964 36 100.0 30 .................................... TAAGCCTTCTTGGGCAGATAAAGATGTAGC 6898 36 100.0 30 .................................... TCTTTTCATTATACTCTATTCCCCTTAATA 6832 36 100.0 30 .................................... AATTGTAGAGGATACGGCATTTAATCCACT 6766 36 100.0 30 .................................... AGATAAAAACAAGGACAAGTAAATTCAGAG 6700 36 100.0 30 .................................... AGCAAAAAGCATTACATTTGATGAAATTCC 6634 36 100.0 30 .................................... CTCCCGTCACCTTCTTCTAACTCCGCTATT 6568 36 100.0 30 .................................... AGTATTGCCATTAATAGCATCAAGTAAAGA 6502 36 100.0 30 .................................... AGCTTATAATTTCCATCAACAAAATATTAG 6436 36 100.0 30 .................................... CTTAGTTTATCAGTTTATCACAATGGAAGA 6370 36 100.0 30 .................................... CGGGTCTTTTTTGACCACTTCGGAGAACAT 6304 36 100.0 30 .................................... TAGATATACTTGTCCTTTTCCTGTTACTTG 6238 36 100.0 30 .................................... CATTCTTCCGCAGAGAGTTCAACGTAACTT 6172 36 100.0 30 .................................... GCAACAATGCAATGAAACATTAAGAAATGG 6106 36 100.0 30 .................................... TTATTCGCTAATGTTGCAAGATGTGCAGCA 6040 36 100.0 30 .................................... ATTCGTTATTTTATTCGTTAATAATGGTGA 5974 36 100.0 30 .................................... GTTATTGTCAAAACACTTCCCGAATGCGTT 5908 36 100.0 30 .................................... TTTTGTTCGCGTCGTTCTGTCAGCCCGAAT 5842 36 100.0 30 .................................... TACATCTCCTTTTCAAATAATATTGTTAGT 5776 36 97.2 30 ...A................................ CAGTACTTGAGTCAGCCACCTTCCATATAA 5710 36 100.0 30 .................................... TTGCTGTACCCATTTTGGAATGCTTTTACC 5644 36 100.0 30 .................................... GTGCTGCTGTTAGAGAGTCATGTTCACGCA 5578 36 100.0 30 .................................... ATCCCATTTTTCAACATAATAGGTAGCAAC 5512 36 100.0 30 .................................... ATGCAACAAAGGAGTCTTGTATAGTTTGTT 5446 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGTGATGGGGAAGAGATTGAACTTATGTTTGTTTTAGAGCTATATTATTCTGAATATCAACACACAAAGATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //