Array 1 79676-79188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZMZ01000012.1 Moraxella atlantae strain CCUG 66109 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 79675 31 100.0 35 ............................... GTATCGCGTCCGAAAAAGCTCGCGCTTCTCTGGGT 79609 31 100.0 34 ............................... GTGCGACCCAAGAGCTACAAACCTCGACCGATTT 79544 31 100.0 34 ............................... GGTACTGGCAATGATGGCAACTCACAAGACCAAT 79479 31 100.0 35 ............................... TAAACGGGCAAAGTAGGTTGTGTCCAAGTGCATAT 79413 31 100.0 33 ............................... AAAGGTACGTTTATTTATAAAGAGGGTGATGCT 79349 31 100.0 34 ............................... AAAATTAACGGCGTGGACACGCAGCTTATGTGCT 79284 31 96.8 35 .......T....................... GATATTAGTATAAATATCACCGTAAAATTGCTTGT 79218 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 8 31 99.6 34 TCGCACCCCACACGGGTGCGTGGATTGAAAC # Left flank : TGCGTCATGTGGCTCGGCAATGCCAAAATTATGGACAACGAGTGCAGTATTCGGTCTTTGAAATCGAAGTTGGCCCTGCTCAATGGACAATTTTAAAATCCAAACTTGAAAGTATTATTAACAAAGATACAGATAGTTTACGCTATTATTATTTGGGCAAAAATTGGAAACATAAAGTTGAGCATATTGGGGCAAAACCCGTCATTGATTTAAATGATATGCTATTGTTTTAAAAGTTATCCTTTGGTATAAAGATAGACTGTTATAAGGTCATCTTTGGTGAAAAGGCAAAAAATGGGGGAATACGGGTGCGAACCCTAAGCTCTCATATTTTTGCTAGAACATTCGCACTATTATGTAACAATATGATTTTAAATAATTTATTCGCTTATTGTAAAGATTTGGTTAGGTCAATTCTAGCCAAATTTCGCTTATCTTTTAATCATTCGCAAAATCAGCGTTTTTTTAGCTGTAAAGTGAATAAGTTAAAAGGTGGGCTT # Right flank : TTAATTTTGTGTCAAATCTAATAGCGCCCTACTAGTTGTAACGCATATTTATGAGATGAAAGTTCTAGCTTAAGTATTTTTGGGTGGGTGTCAAATTCGACCTGCTTAAAAAATAACCAAGGCACAATTTGGGCACAAAATGGGCACACAAAAATTTTTAATGATTTTTATGTGCCCAAAATCAGAAAAGTGGTCAAAATTTTCAACCACTAAAAATCGCTCAAACCCTTGATCTCACTGCAATAAAAAAGCCTCAATCGACTGACTGGGGCTTTTAAAAACTGGTAGGCATAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAATGTGGAAAAAGATTATAGCACAGCTGCTTATAAACGCAAGCGATTTTTGTATACGGTTTTTATCGCAGGGATAAATTCTACGATATCTTTTTGGCAGCAAATTTTGCTAAGATAAGAGGATACGATGGTTTAGCCAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCACACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3195-2025 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZMZ01000013.1 Moraxella atlantae strain CCUG 66109 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3194 29 100.0 31 ............................. AGCTACGCTCCCTGGGCTGACATCGAATTAG 3134 29 96.6 31 ............................A AACAGATATACAGCCGCCAGCTAATCAGCCA 3074 29 100.0 31 ............................. TTAAAAACCTTTAAAAACTAAAAAAAAGAGA 3014 29 100.0 31 ............................. GTTCGATGATTTCTAAACAGTAAGGGTATGC 2954 29 96.6 31 ............................A GTCACGCGCCAAAAACCTGCTTTATTTTGAC 2894 29 96.6 31 ............................A TCAACGCCGTCTTTGCCATCAGCACCATCTT 2834 29 96.6 32 ............................C AGTACATACGACAACGAATTAAACCTGCCCGA 2773 29 96.6 31 ............................A ATCTCAATCACCGCAAAAGGCAGAGTAATTG 2713 29 96.6 31 ............................G CGATAAGCCCGAATGTGTGGTGACGCTTAAC 2653 29 100.0 31 ............................. TTACGCTTTAGGGTGAGTATTTGCCCAATGG 2593 29 96.6 31 ............................A ATAATTCTAAACTATGGGACAGCGACGTGAT 2533 29 100.0 31 ............................. GCTCTATTTTGACGCTATGCCGCTTTTTGAC 2473 29 96.6 31 ............................A GTCAAGCAGTAAGTTTGGTAGTAAGCCAAAA 2413 29 96.6 31 ............................G AACTACAACAAGCCCAAATGGCAGCCGCTAA 2353 29 100.0 31 ............................. TGTGCTCACTTACAATCATCCTGCACAGCGC 2293 29 96.6 31 ............................A ATAGCGTTAAATTAATGTCGTTTTCTACTAT 2233 29 96.6 31 ............................G TATTAATCAGTACGCTCAACAAAATGACGTA 2173 29 100.0 31 ............................. AGCAATGGTTGTCCTGCTGCGCCCTAAAGAT 2113 29 86.2 31 A..C......A.................A GTTTCCCCAGTATGTGCATACACATATTAGA 2053 29 86.2 0 A..C......A..C............... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 96.7 31 CTTTACCGCCGCATAGGCGGCTTAGAAAT # Left flank : CTTGATTGACTATGTGCATCTGACGACTGTTAAGGAAGTGGGTGATAAAGCGACTGGCAATGTCGTGGTCAGACGTTATCGTTATAAGGATTTTGACAAAAAAGTGGCGGAATTTGCTCAGTTTAAAGGGATTAGCGAAGAAAAAGCGTTAGCGCATTGCCGAACGCATAAACGCCCTATCAAACGCTATCCGTTTATTACCTTAAAAAGTGAAACCAATCACTCTGATTTTAAATTATCGATTTGGCAGGAGGCAACTCAACACCCCAAAACAGGGGGATTTAATACGTATGGAATCAATAATCAGACCAACAACGTGACCGTTCCGCATTGGTAATCAACAAAGCAAGCAAAAATAAGGGTGAATAACCCTTATTTTTTACTCTATAAAAAAATGTTTAAATTTCAATAATTTATGGCAGGGTGGAATCGGTAGGGTAAAAAAGGGTTTTTTACTTGGTAAGCCTTGTTATGACTGGCTTTTTTGCGTTATCATTCCT # Right flank : AGTACCTTATTGCTGGCTTTAAATGCTTTACTTAAGTGGTTGCTAGGTTTTTACCATTGGCATAGAATATCACAACCGCACGATCAAACATCGAGTAAGGCAAGTAATTAGGCAAAATTGTAACTTCTCCAAAAACTGAAAAACCACTTTAAAGCCTTTGCGTTAGCATTTTTTACATTGATAACGGCTGTGTCTGATAGCGACATACTTTTAAAAGCACCATAAAAAAGACAGCTAGTTGCCCAACCGTCTTTTAAAAAAATTTATTTGTATCACCAAAGCGATTTAGCGTGTCTTATTGCGGCGTAAATGGTTACTGCGTCGCGCTTTGAGCGGTTTTTGCTGCTGGCGTTCTTGCCGACGTTTGGCAATGCCATACAACCCTGTACCTTGACGTGGACGCAAGCCCACTAAATTTGCCAAACGGTCAATCTCGCTGCGGTCAAGCTCTAGATATCGCCCTGTGCGCAGCTCACGCGGTAGGCTAACCGTACCGTAGC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGCCGCATAGGCGGCTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //