Array 1 3411613-3410263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049017.1 Xanthomonas theicola strain CFBP 4691 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3411612 28 100.0 33 ............................ CAGCACCGAGGCGGCCAAGCTGATCACCCAGGC 3411551 28 100.0 32 ............................ TGGTCCACCGGCACGCCGTCCGGCCAGCGCTG 3411491 28 100.0 32 ............................ ATCGTGGACATGCTCCACAACCGGAACAAGGA 3411431 28 100.0 33 ............................ CGTATGTTCGTACCGACATCACGCAACCAGGCA 3411370 28 100.0 32 ............................ TACGACATGCTGCGCAAGCCGTTCAATGAGGT 3411310 28 100.0 32 ............................ CTTGTGATCGATCAGGACTTGCAACAAGTTGC 3411250 28 100.0 32 ............................ ATCGAAGCCCTGGCGAGGTCACCGCCCTGCGA 3411190 28 100.0 32 ............................ AATTTCGACAGCCGTACAGCTAAGCGGCTGTC 3411130 28 100.0 32 ............................ AGCACGCCCATGTACGTCGGCGCGCGCGGTAA 3411070 28 100.0 33 ............................ CTTGGGTGCGATATTAGTCTCAATTTCGTTCTT 3411009 28 100.0 32 ............................ TTGGCCCGGATGATGCCGGTGCGCCGCTGTGC 3410949 28 100.0 32 ............................ TGCCCGCGGCGCGCGGCGTGATCTACGTCCAC 3410889 28 100.0 32 ............................ GTTGCGGTGCCGATGAATCTGCCCAGCTTGCG 3410829 28 100.0 31 ............................ TTCGTGCAGGTCCAGCCATGAGCGGCTTCGA 3410770 28 100.0 32 ............................ CTCCGAGAAAGAGAAAGCAGCCATCGCTGCAA 3410710 28 100.0 32 ............................ TTGATCAGGGTCGTGGTCTTGTCCGGTTTCCA 3410650 28 100.0 32 ............................ TGGATCATCGAGCACTTCCCGCCGCACCACAC 3410590 28 100.0 32 ............................ GCAACCACGATCGGGCCAGGGTCATCACCAGC 3410530 28 96.4 32 ......................A..... CATAGGCAACGATCTCGAAGCCGAACGAACGG 3410470 28 96.4 32 ..........A................. AGGAAGATTCGGTTGACACCCGGCGACTGGTC 3410410 28 100.0 32 ............................ GTACTGGCCGCCCTGGGCGGCGAGAAATCCGG 3410350 28 96.4 32 .................T.......... AGGTCGAAACCCTCGAACACCTGCCGGATGTC 3410290 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GACTCCACCAGCATCAAGGTGCATCCCGATGGCACGGGCGCATTAAAAAAAACGGTCCGCAGGCCGTCGGCAAGTCCCGCGGTGGATGGAACACCAAGATTCATATGGTTGCCGCAGATGCTCGAACAGCCATCACCTTTGGATTGACGCCTGGTAACGTGCATGACGCACCTGCAGGCCGCACGTTGCTTGAACACCTGGGGCCAGTGGAGCGGCCGATTCATTTGTTGATGGACCGTGCCTACGAAGGCAACCAAACCCGCCAGTTGGCGCTCGATCTTGGCTTCGTGCCGGTGGTCCCGCCGAAATCCAATCGGGTCGAGCCTTGGGAATACAACCGGGAGATGTACAAGCGGCGCAACGAAGTGGAGAGACTGTTCCGTCGCCTGAAAGGCTACCGCCGGATTTTCTCGCGCTTCGAGAAGCTGGATGCCATGTTCCTTGGATTCCTCAGCTTCGTCCTGGTCGTTGATGGGCTTCGGATGTGTTAACAGGCCCTA # Right flank : TTGATCAACTGGTACTCGCGGGTCTTCATGAGGCTATCTCATTGAGAACCAGTTTTCCACCTGGTTGAGCCGCGACGAGTAAGTCGGCGTGACGTGCCAACGCACGTTGCGATGCGAGGTGAAAAAGTCGGCCGCCCGCCGTGTCTTGTGGCGGCTCACATGATCACAAATGACGTGGATTTCCCGGCGTTCAGGCTGGCTGGCGACGTCATCCATCAGATCAGAAAGGCCACAAACTGGTCGCTGGTGTGGCGCGGCGCCGTCTTGCCCACCGCCTCGCCGGCAGCAGTATCAAATGCTGCGAACGAACTGAGCGTTCCGTTGCGTTGGTACGCCAAGCCGTGGCTCTCGGCACGCCCCGGCGACAAAGGCAGCATCGGGCCCTTGCGCTCGGGTGCCTGGATCGCGGTTTTCTCATCCACGCAGAACACCGCCGAGTGCGCCGGTGGGTTCAGATACAGCCCGATCACGTCGGCTGCCTTGGTCTCCAACGCCGGATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3417798-3415729 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049017.1 Xanthomonas theicola strain CFBP 4691 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3417797 28 100.0 32 ............................ GACTCAAGACCTGCGGGTTGCCGCTGCCTGAT 3417737 28 100.0 32 ............................ ACGCCGGCCGTGGGCGTCATCGGCGGTATCGA 3417677 28 100.0 32 ............................ CGCTGGCGGCGCCCTGACTCGAACAGGGCTCG 3417617 28 100.0 32 ............................ AACTGGGCCGCCCGCTCAGGCTCAGGAGCCGA 3417557 28 100.0 32 ............................ GAAACCACAGCCAAGCCCTGCCATCCGGCGGG 3417497 28 100.0 32 ............................ GGCAAGCACTGCGTCCTCGGCGTGGGCCAGAG 3417437 28 100.0 32 ............................ AGCTCGATCAGCGAGCGGGCGCCGGCGATCAC 3417377 28 100.0 32 ............................ TGCAAAGAAGACGTCATGCCGGATCAGAAGAC 3417317 28 100.0 32 ............................ AACGGGACAGGCGGTATCAGAGTGTACGGGCT 3417257 28 100.0 32 ............................ AGGTGTAAAACCGTCCTCCCATGACACGCTCA 3417197 28 100.0 32 ............................ ACATCCTGCTCCGACCGTCATCCGTTTCGAAC 3417137 28 100.0 32 ............................ AAGACAAAAGCACCTCTGGCGTAAGGCGGAGA 3417077 28 100.0 32 ............................ AAATGCCGCCCTCCGATCAGCCAGATACTCAG 3417017 28 100.0 32 ............................ AATCTGCTTGCTGAGCGTCCGCGGACCGTGGG 3416957 28 100.0 32 ............................ TCACGCCAGAGGAGACAGTAGATCGGCGCATC 3416897 28 100.0 32 ............................ TTGCCGATGAAGGACGGGTTGATGTACGTGCC 3416837 28 100.0 32 ............................ TGTTCGACACGCTGCCGGATCCGCAGGAGGTC 3416777 28 100.0 32 ............................ GCAAGCTCATCCGCGAGGTCCAACTGTGAAGC 3416717 28 100.0 32 ............................ AGTCCGTAACGCACTTTGCCGAACGCGTCGGA 3416657 28 100.0 32 ............................ ACGGGAGAGTGAGCCGGATCACGCCGACCTCC 3416597 28 100.0 32 ............................ CGATCACGATCTACCCGGACGCCAGCGGTAAG 3416537 28 100.0 32 ............................ CATATGACATCCAGGTATTCATCCTTGAGGAC 3416477 28 100.0 32 ............................ GGCGCGGCCTGAATGCCCGGCAGGCGGTCCAC 3416417 28 100.0 32 ............................ GTACCGCTCAAGTAGTGCGACGGCGAGCACAT 3416357 28 100.0 32 ............................ TGGCTGCGCCTGGTCGTCGCGCTGGGCGTGCT 3416297 28 100.0 32 ............................ ACATGCGGCGCTGGCCGTGCAGCCCGTTGAAG 3416237 28 100.0 32 ............................ AGTTAATCTCACGATTGCCGCTCTTGGTTTCC 3416177 28 100.0 32 ............................ CCTGGTTGACACCGCTCAGCCGGCCGTCACGG 3416117 28 100.0 32 ............................ CACCGGCCGCCGCGCTTGCTGGGGGTCACCTC 3416057 28 100.0 32 ............................ TCCGGTGGCAGGCAGGAGTAACGACAATGACC 3415997 28 100.0 32 ............................ GCTGCAAGCGCTGGTGAAGAAAGCTGCGCAGA 3415937 28 100.0 33 ............................ CTGTTCTGGCTTGTTCTCAACGATGGCGTCTGC 3415876 28 100.0 32 ............................ AGGCCGAGCATGAACGCGGTCTTACCCATGGC 3415816 28 100.0 32 ............................ TGGCTCGCTGCGCGCCGGCAGCGGCTGCCCGC 3415756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCCAGATCGTGCGTCTCCAGCAACCGGCGGAAGTTGAGGATCGTGGTCTCGTCCGGCACCTCATCCAACCCGCCGATCCTGGCGAAACGGCGCATCGACGCCGTGTCGTACAAGGCTTCTTCCGCGCCCGGGTCGCTCAGTGCGTACCACTGCTGCAGAAAGTGGATGCGCAGCATTGTCTCCAGCGGGTACGGCTGACGGCCCGGATGGCCCGACTTCGGATAGTGCGGCGCGATCAGCGCCAGCAGGTCTTTCCACGGCACCACCTGATCCATCTCGGCCAGCAACCTTTCGCGCCGCGTCTGCTTGCGCTTGCCGTTGTACTCCGCGTCGCCGAAAGACAATTGCATCGTCGTTGTCCTGTTGGGCTTTGTACGATTGTCGCAGGATCAGAGGGAGTTGTTCAGACCATCCTTAGCGGCCATCCTCGCGGGAAGGGAGGATGGCCTTCCTTTGCCTTATTGTTATGGATTCCAAGCACTTAGGTTATTGTTGGTCTT # Right flank : TTGGTAGAGCAGATCGGCGAGCACCTGAGCTAGGGCCTGTTAACACTAATGGCCCGAGCGTTTAAACTATCGGGCATGGAGATCACGCCAGCACAATTTTCCCTAAGGATGGTCTGAACAACTCCCTCTGATCCTGCGACAATCGTACAAAGCCCAACAGGACAACGACGATGCAATTGTCTTTCGGCGACGCGGAGTACAACGGCAAGCGCAAGCAGACGCGGCGCGAAAGGTTGCTGGCCGAGATGGATCAGGTGGTGCCGTGGAAAGACCTGCTGGCGCTGATCGCGCCGCACTATCCGAAGTCGGGCCATCCGGGCCGTCAGCCGTACCCGCTGGAGACAATGCTGCGCATCCACTTTCTGCAGCAGTGGTACGCACTGAGCGACCCGGGCGCGGAAGAAGCCTTGTACGACACGGCGTCGATGCGCCGTTTCGCCAGGATCGGCGGGTTGGATGAGGTGCCGGACGAGACCACGATCCTCAACTTCCGCCGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4241082-4242158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049017.1 Xanthomonas theicola strain CFBP 4691 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 4241082 31 100.0 35 ............................... AACTGGAACAGCCGGATCCACAAGAGCGCGCTGAT 4241148 31 100.0 33 ............................... CGCACCGGCCGCACCGCCGCCCACGGGGTCCGT 4241212 31 100.0 33 ............................... TACCGGTACAGGACCACCGCCCGCAAGTTACAA 4241276 31 100.0 34 ............................... GGTCTGGACTGCCGTAACATAAAGTCACCGCGGG 4241341 31 100.0 33 ............................... GCAGTGGCTGCGAAAGACCACGCATTACGGTCA 4241405 31 100.0 35 ............................... AGGTCGGCCGTGACCGCACAGAAGTTGGCGCTCAG 4241471 31 100.0 34 ............................... ATCGTCCGCGTCGGCTATGCGCCGGCCGCATCTT 4241536 31 100.0 35 ............................... ACGTCGATCCGGTTGTACGCTTCGCACTCGTCCCA 4241602 31 100.0 35 ............................... GCGACGAATGCCTGCCCACTGCTGACGTGCGTTGC 4241668 31 100.0 35 ............................... TTCGCCGGCTGGAGCAAGGAGGTCGGCGGCATCGC 4241734 31 100.0 34 ............................... TGGTGCAAGGCCGCACCCTCGTTGACGTATGCGA 4241799 31 100.0 34 ............................... CGCAACGAGGACATGCTGTTCGAGTTCCCCGGCC 4241864 31 100.0 36 ............................... CTTTGCCGCATTGACACTAGGCTCGACCTTGCTGGG 4241931 31 100.0 34 ............................... CCGCTCAACGCCGACGGCACCATCCCTGCAAAAC 4241996 31 100.0 35 ............................... ACGTCGGACATCGTCTCGTAGCCGATCACACGTGC 4242062 31 96.8 35 ..........A.................... TCGACGACCAACGCAGACCTGATCAAAACCGCCCG 4242128 31 83.9 0 ....T.......TC.....A.....C..... | ========== ====== ====== ====== =============================== ==================================== ================== 17 31 98.9 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCACTACGCCATGATGATTCTGGTCAGCTACGATGTCAGCACCAGCTCTCCCGGCGGCGAAAAAAGATTGCGCAAGGTCGCCAAAGCGTGCCGTGACCTTGGCCAGCGCGTGCAGTTCTCTGTCTTCGAAATCGAAGTAGAGCCTGCGCAATGGGCCGCATTGCGGCAGCGTCTATGCGACCTGATCGATCAGGATGTCGACAGCCTGCGCTTCTACCACCTCGGTGCAAGATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCGCTGATCTTCTGACGCGAACCGCAAGCGACTGGGGAAAGCCTGGTAGGTTCGCGGATCATCACAACACTTTGATTTTAAAGTAAAATATATCAACTCTTCCGTTCATTTCACGTGCACGGCAGCTCAATTCGATTGCGTCTTCGAAGGGTTCCGCACAAGTGCGGACTTTTTCTCAACACCTATCAGCACTTATGCTCAGGGGG # Right flank : CGATGGAGTAGGCGCTCATGCTCATGCGATCGCAGTCTCCGAACCGCGCCCGCACAAGCCTATGGAGAAACCAATTTCCATCCATTCTTTCAAAAAAGGACGCAGCCTTGCGGCTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGGCGGCAGGCGCGATCCGTTACTGCGGCATCGCTTACTGATGCACGATGCGCGTCATTTGACTTCGAATTGCTGCGGGGTACCGGCCGGCTTGCCGTCCACGGTGACTTCGGCCTTGTACGTGCCGGCCGGCCAGCCCTTGGCATTGGTGAACTCGAAGTTGGTGGTCTCCGCCCCGGCAGTGGTCAGCGTCTCGCTACGCTCGCCAGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGATGCTGGTGTTGGTGGACGAGCCCTCGGTCTTCACCGAGACGATGATCTTGTCCTTGCTGGCCAGCGTGGTCAGCGGGGCCACGGTCTTGTCGGCGCCGGCGGTGTTGCCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //