Array 1 23017-20462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTF010000025.1 Pseudomonas aeruginosa strain KPA69 contig00025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 23016 30 100.0 36 .............................. TACTACTCCAGCTCGCCCACGCTGAAAGGCGTTTGT 22950 30 100.0 36 .............................. CGAATCACTGCGTATAGCGCCCAACAGATCACCGGT 22884 30 100.0 36 .............................. CCATTCGCTCGGCGCCGATGCTCGCGTGCTGGACGT 22818 30 100.0 37 .............................. AAGAACGCGGCAGGCAACGCCATCGGTGGCGCCTGGT 22751 30 100.0 38 .............................. AGCAAGACCATTGCCGCCCTGGAAGCCGTGGAGAAAGT 22683 30 100.0 35 .............................. ATCGCCGCCGGCCAGCCAATGAACCTGCGCGAGGT 22618 30 100.0 35 .............................. ATCAACCACGGAGTGTTTAAACATGGCAACGACGT 22553 30 100.0 37 .............................. CCCATGAATGGGAAGGGCAGGGCGGCTGCGAAGAAGT 22486 30 100.0 35 .............................. TCAGTTCCTGCTGCGCAGCAAGGTGGCAGGCGGGT 22421 30 100.0 38 .............................. CTGAAGGGCGGCGCCCTGCAGGTTGCTGGCGCCCTGGT 22353 30 100.0 35 .............................. ACGAACCTGCTGCAGCCTGTGAAGTACAGCACCGT 22288 30 100.0 37 .............................. GGCACGGACATTGTGAGCCGCAGCAGGGCGATCGAGT 22221 30 100.0 35 .............................. AAATCAGAGTAGTGGTGGCGCGCCGACCATAAAGT 22156 30 100.0 35 .............................. CCGATCAGGCCAGAGCCGCAATCGCAAAGGCCAGT 22091 30 100.0 37 .............................. ACGGTAACGTTCAACAACGGTACCGCGTCGCCGATGT 22024 30 100.0 36 .............................. TGACGGCGACGAGCTGATGACCGTCGCCCAGCATGT 21958 30 100.0 36 .............................. AAGTACATCGCCTACACCGACTGAGGTGAAACATGT 21892 30 100.0 35 .............................. ACTCCTGATACATCGTGGGACATTGAGCCTCCGGT 21827 30 100.0 35 .............................. ATCGCCGCTATTGAGCGGCAGGAGAAGGGATTGGT 21762 30 100.0 37 .............................. GATGGGACGAGGTAGACGAAGAGGCCAGGCGCATCGT 21695 30 100.0 38 .............................. GGGTAGAGCAGGTGCGTAGTCAGTTCGCCCCAGGTCGT 21627 30 100.0 37 .............................. CAGACTGTATCGAAGATTGTCAACGGCAAGTCTTGGT 21560 30 100.0 37 .............................. TTCCATCACTTGGCCTGCGTAGTACTCACCAGCATGT 21493 30 100.0 35 .............................. TGCGCCCCGACCTGATCGACGTATGTGATCGTCGT 21428 30 100.0 36 .............................. GCATAATGCGGATCGCGAACCTCGCCGCGAACCGGT 21362 30 100.0 37 .............................. GTCGATCCAGATGGCTCCAGTGCCGAACACGCCCAGT 21295 30 100.0 38 .............................. TAGCACGCGCAAAGCGTATTCCGGGATGCCATCTGGGT 21227 30 100.0 39 .............................. AAAGACACTCGCGGCCAGTACGGCTGGCCCGACTACAGT 21158 30 100.0 36 .............................. ACTTCGACGACCAGGTACTCACCGCCACCGCGGCGT 21092 30 100.0 37 .............................. ACCAACACCATTGTCACTGGCGACGGCAACAGCGTGT 21025 30 100.0 36 .............................. AGCGTGTACGTCTACCAGCTCTGCCGCCCGGTGCGT 20959 30 100.0 37 .............................. AGGTGGGACGATCCGATCTGGCAGCACATCACCCCGT 20892 30 100.0 37 .............................. ATGGCTGGGCGCGTTCGCTCAGTGGGTAAAACGCAGT 20825 30 100.0 36 .............................. GTCTCCGTTGGATGTTCGGCACCGCCTTCCGGTGGT 20759 30 100.0 36 .............................. ACGTCGCCGGCATACATGTCCTGCCGGATTGCCAGT 20693 30 100.0 38 .............................. TGGAGCTCACATGCCTATCACTGAGCAGCAACTGCTGT 20625 30 100.0 37 .............................. TACAACCCGCGGGTCTTTCGTCATTGCTGTCAGGGGT 20558 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 20491 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 99.6 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATAGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCACCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTATAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGAAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAAGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAGGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACTGTTGGTCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33468-35116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTF010000020.1 Pseudomonas aeruginosa strain KPA69 contig00020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33468 28 100.0 32 ............................ ACCCGAACACGTCGCCCAGGAACGGCGTGCCC 33528 28 100.0 32 ............................ GCCGAATCCGCGACCCGCGCTGAGTCGCAAAC 33588 28 100.0 32 ............................ TTGGCGATCAACTGATCAGCGATAGTGTTGTA 33648 28 100.0 32 ............................ TGAATATCGCTCAACCCTATGACGTCACTCGC 33708 28 100.0 32 ............................ GATGACGGCACGAAGTCCAGCATGGTCGGCAA 33768 28 100.0 32 ............................ GGCATCGACTCGCCGGACCTGCTGAGCCGGCT 33828 28 100.0 32 ............................ TTATGGAGCAAGCCATTTCATCAACCATGAAG 33888 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 33948 28 100.0 33 ............................ AGCGATCTCAAGGCCGGAGCCGAGCGCCAGCGT 34009 28 100.0 32 ............................ AGTTCCAAGTCGCCTCGGCGCACTGCAAGCAG 34069 28 100.0 32 ............................ ACCTTTCCTTTTGCCGGCAGCAGTCCAATCGA 34129 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 34189 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 34249 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 34309 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 34369 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 34429 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 34489 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 34549 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 34609 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 34669 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 34729 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 34789 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 34849 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 34909 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 34969 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 35029 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 35089 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44512-43644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTF010000020.1 Pseudomonas aeruginosa strain KPA69 contig00020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44511 28 100.0 32 ............................ AATGCGACGGCGAATATCGCCCTGCAATGGAT 44451 28 100.0 32 ............................ TGATCAAGATTCGCGTCGATGGCTGCAAGCTC 44391 28 100.0 32 ............................ CTTGACCTGCCGGGACTCCCAAGGGGCTGGGG 44331 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 44271 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 44211 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 44151 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 44091 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 44031 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 43971 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 43911 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 43851 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 43791 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 43731 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTAGGGCGA 43671 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //