Array 1 176011-175382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000002.1 Vibrio metschnikovii strain M26X Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176010 28 100.0 32 ............................ TTTAAACGCCATGTTAATCCCAATGATTGTTA 175950 28 100.0 32 ............................ TACAGCACTGGGGTGGCCGTTTCAATATGTAT 175890 28 100.0 32 ............................ ATTTACAGGCATCATTGACGCGTTTCGAAAAG 175830 28 100.0 32 ............................ TGTTCCTAAAGGGCTTACAGCTGTTGATGTGG 175770 28 100.0 32 ............................ TCGAAACGTAAGCGATTCGTTGCAAAGTCATT 175710 28 100.0 32 ............................ ATCATCTATTTCACACGGCTTGAGTTGAGTCA 175650 28 100.0 32 ............................ TTCTTCCCGTCCTAGTCGATGCAGGCTTGCTG 175590 28 100.0 32 ............................ TGCTGTTAGCTCTGGGAACAGGTCTAGAATTT 175530 28 100.0 33 ............................ GCAAATACCAACACAGAAAAGCCAATATTACAT 175469 28 100.0 32 ............................ TATCATTGCTTTTTCTTTGTCCTCACCAACGG 175409 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTTTTGCATGATTTACAAGGTTTAAACTGGCTTGGTCCGTTATCTGGTTACTGCCAAGTGAGTGAGATATTGGCTATTCCTGAACAGGTGCAATATCGAGTGATCTCAGTAAAGCGTAGCAATTTAAGTCAAGCGAAGCTCAGACGTTTGATCGCTCGCGGTAGCATCGATAAAGAAGGTGAAAAACGTTACAAAGTGAAAATGCTTAGCCAAGGTTTTGATAATCCGTACCTAGATTTATTCAGCAGTTCGACGAAGCAGGTACATCGTAAATTTTTTGAGTTTGGTGAAATACAGCCACTGCCAGTATCCGGAAAGTTTGATTCCTATGGGCTAAGTCATACCACTACGGTTCCTTGGTTTTAACCCTATTTTTTTGCTCTTTAAAAATAATCTTTAAATACAAATAGTTACATCGGGTGATTTAAAATAGGGTAAAAATACATTTTTTGCTCTAACTGCTTGTTGTAACTTATTTTTATGTTGTTATTCTATA # Right flank : CGCCGGATTCGATGGAATCAAACTCCCGCCAGTCATCCCCGCGAAGGCGGGGATCCATTCTGCAACAGATGCCAAGTGCTTAAGTGATTGTTCAATTGCCGCAGTTTATGGGTACTACGCATAGATTCCCGCTTACGCGGCAATGATGCTTGACGCTTTGAATACTCGATTGTTCACCTTGATTACAAGAAAGCGTGAGTTGTTTAACAATATGTGCGCCTAATTCCTTAGACACTACGTTGTATGATTGATGTGAGTGGTGGAACACATGAGCTCCCTAACGTTACCTTGCCAGCGAGAGATTGATCTCTCATCAGAGTTAAACGTCGTATTACAAGACAATGAATTGCATTTTTCTTATTTAGGATGCGACTCTGTGCCCATCAGCGATCGCTATGTCCTATTTCGGATGGCGCTAAATAGTGATCCCCATGCCCGAGTCATTGGCGATGGTTTTCAAATGTTGGCCCAAACGGCGGGTACGGTGAGTCATCCGCTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5488-5815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000031.1 Vibrio metschnikovii strain M26X Scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5488 28 100.0 32 ............................ ATCAAGTATTACACATGGTTTTCAATCAATTA 5548 28 100.0 32 ............................ CTCTGGTCAAACCTATAACTATGCAACTCGTC 5608 28 100.0 32 ............................ AATCAGTAATATAATCATCATAGGTTGAAAAT 5668 28 100.0 32 ............................ TATTTCATCGTCACAATAATCATGATCTTCGC 5728 28 100.0 32 ............................ TGTGGAGGCTGGGGAGTCAGTCGCAGCTAGGC 5788 28 89.3 0 ........T....C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGGATGGCGCATGTAATTTTGAGGTAGTGGACGTTGCAGTTGATCCCTCTTACCAAGGTAGGGGTCTTGGTCGAAAAGTTATGGAGTATATAGATAGTTATTTGTCATCAGTTGCTTTAGATGGTTCGTATGTATCAATGATTGCAGATGAACCGGCATTTTATGAAAAGTTGGGTTACAAGCTAGTATCTCCATCTAGCGAAGGTATGACAAAAAAGTTTAAACCGCACGTATAACAAAGCGTTCAAGAGGGACAGCCAACGCGTGGCATTTTTATTATGCGTTGATTTTTGTGATTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAACGCGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGAATTTTAAGTCATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAAGTTACTGATAGAGTTTCATT # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGCAATGCGGTGAGTTGGCAGTTGCGTTGCTCACCCCTTAACGCGGCGTTAGTTGCTTTCATAAATAATAGGTAAGTACATGGAAGAGAAGTTGGTATCATTTGATCTCGAAACAGATCTAGTCATGTCATTGCGGTGCTTACTTGACGCTTTGTCTCAAATTGAAAGAGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3709-4096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000014.1 Vibrio metschnikovii strain M26X Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3709 28 100.0 32 ............................ TGCGGGGCTAACACATCTTTTATAATTAGCAT 3769 28 100.0 32 ............................ GTGATTGGCTTGGCACTCTACGTGTTCGTTAA 3829 28 100.0 32 ............................ CGAGTGAGGTGGTGGTGCTGCGTTTTGTCAAC 3889 28 100.0 32 ............................ TGACGACTCACAGCAAACTGTTCAAGTTAGAG 3949 28 100.0 32 ............................ AAAAGAAGCGCAATCGCGCCATGCTTGAAAAT 4009 28 100.0 32 ............................ GCCAAAACCAATGGCGGTAATATTTCTGATCT 4069 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGTTCACCTTCAACAAGTAGTTGACGGAGAGTCTGCAGTTTAGTCTCTTGGTTTTCGAGTAAACGCAAAGCTGAGCGAATAACTTCACTTGCAGAGCCATAACGCCCACTTTGAATTTGGTTTGTAATAAAACCATCAAAGTGTTCACCAAGGGTAATACTTGTGTTCTTAGCCATAAATTTATTCCCAAAAGTACCAATAAGTACCTAATTATGGTATTAAATGGCTTCGAAGGCAAGGCGTATACGAACGCTTCAAGAGGGACAACCAACGCGCGGTATTTTTACTATGCGTTTCTTTTGTTATGCGGTTGCATCGGTATTCTGTTGCTCGCTCCTTAAAGTAGAGTGAAGTAGCAATAGAATTACCCATATTTTTTCGTTTAATTTTAAGTTATTGATTTATATAAATAATAATCTGGATGAAAAATAAAGGGTTATTTTGATAAATTTGATGTAATTACTATTATTAACAATAGCTTACTGTTATAGTTTCATA # Right flank : ATTGCAGTTGATTTGGCTTGGTTGGATCAATAAAAACAAACTTTTATTGTATTGAAAGCCGTCATTGACTGAACCCAAAAATCAGGCAAAATGTTTACAAGATGCACAACCTCGCCCACTCGGCGGGGTTTTTTTATGCCTGTCATTTGGGGGTGACAATGTCACTAGATAAAGCCACGATTGCTATCGCTACTGGCACTGGAACGACGGTCGGAGTCAGTGCTGCTAAATCTGCGCAAAGTGCGCAATCTTTGTTAAATTCCAGCATTTCACAGATATTAGCGGGTGATTACACACTCTACGGCTCTGATATCGCTACGATAGCCGGTATCGTTATGGGCGCTCTCGGTATTGTGGTTACGCTCTATCGTATTCGCGTCACTAAGCGACTCGCCAATGCGTTATAACAAGCTGACTACGGCGTTAATCGCTGCTGCGATCGGTATAACGGGCGGTTTTGAGGGTTACAACCGCATTGCATACCAAGATAGCGGGGGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3132-2744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000032.1 Vibrio metschnikovii strain M26X Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3131 28 100.0 32 ............................ TCAGACGGGAGAAATTACACAAAGATTCGTCA 3071 28 100.0 32 ............................ ACACATCGCAGGTTCCGTTTGGATATTTAGCG 3011 28 100.0 32 ............................ TGGTACAGAGCTTAATCCTGATACAAGTCGAT 2951 28 100.0 32 ............................ TGAAATGTCATACTTAATAAGTCTAAATGTAT 2891 28 100.0 32 ............................ TCAAGAGTTACTGCAGTACGCGAATGAGATTT 2831 28 100.0 31 ............................ CAAACTCGCTCTAATCCAAATCAAGCAACCA 2772 28 89.3 0 ...T.......T.T.............. | A [2748] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTCAATTTGAAGTAGAGATAAATTTGGTTGCAGGTGAAAAATATTTTATAAAAGCCAACGAAACTAATTGGTGTATAAATATGACCGTGGTTAATGCAGAAGGAGAAGAGGTTTCGTCTAAGCAATCCAAACCACTTTACCCATTTATAAGTATGAATCATATGAAAGATAGGTCGTTGATGGAACGCGTTCTAAACAAAGTGAAAAATGCCAAGTGTGAGAGTATTTAAACATAACAAACGGTTCAAGAGGGACAGCCAACGCGCGGCATTTTTACTATGTGTTGGTTTTGGTGATTACGGTGTTATGCGGAAAGTTGGTAGTAGCGTTGGCTGCCCCTTAACCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTTAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATACAGTTTCATA # Right flank : TTGGTGATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCTTTGATTTTATTAGTTTTCAGTGTAATGCGGTGAGTTGACAGTTGCGTTGCTCACCCCTTAACGCGGCGTTATATTACAATTGAGTTTATATGGAAAATTTTACATTTATAGATCGTTATTTTCACAGCCAATATGAGTTATTGGACTTTAGGTACTCTGAAGATAGAGATATCAATACTCTTTTTACGTATCTAAATAACCTACATTCTACGGCGGATAAACTTAAAGAGTTATTTGATTGTAATATAAAAACGACTCCAGAGTTTAAGATGTTGAGAATGATTAGAAACTACTTCCACCATGTGGGAGACGTAGACGAGATCAGGCTTCACGTTTCAGTCGATAAAAACGTAATTGTTAGTCACGCGCACCATTTGATTATTCCATTAGAGACTTTAGCTAAGAGTTTCAAATCATTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5013-4744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000032.1 Vibrio metschnikovii strain M26X Scaffold32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5012 28 100.0 32 ............................ TTTAACCGGATTTTTCGACATTGCACCCCCTT 4952 28 100.0 32 ............................ CTAAATTTAAAAACGGCGATGAGTTTTCTATT 4892 28 100.0 32 ............................ CAAGGCTCGCTGGCTGTTCTTAACGCTGACCG 4832 28 100.0 32 ............................ TTGATTTCTGCTGCTTTTCAGGGATAGCATCA 4772 28 100.0 0 ............................ | A [4748] ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AATGTCTAACGAACATTATTGTTTAATCGCATTTAGCAGCTCTTTTGATTTGGTTTACATTAATGGCTTATTTCTCTGATATTTATCATCAGAATCAATGGGTAAGCTTGATTCGATTTCAAAATTAATTGTTTTTTTGTATCGAAATCTGGCTCAACTGACGTTAAGCTTTTGATGTTATTTACTATTTTCAAAGGTTATTTGGTGTTTCAGTGGCTGTATGTAACTGAAATATAACAAACAATTCAAGCAGACCCTCAACGCGTGGCATTTTTGTTTTGCGTTGAGTTTGGTGATTACGGTGTTGTGCAGGAAGTTGGTAGTCGCGTTTCGGGCTACTTAATTGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATT # Right flank : TTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTAAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCTTTGATTTTATTAGTTTTTAGTGTAATGCAGTTAGTTGGTAGTCGCGTTGCTCACCCCTTAACGCGGCGTTATGTGCTTAAAATATAAAGGTAAATATGGCAGTTTTAGAAATTCTTACAGCACCAGATCCAAGGCTTAAGATTACAGCAGAGAAAGTTCAGGATATTGAATCGGTTCAGAAATTAATCGATGATATGTTGGAAACCCTATATTCAACTGATAATGGTATAGGTCTAGCTTCAGTTCAAGTGGGTCGTAAAGAAGCGGTTGTTATTATTGATCTTTCAGATAATCGAGATCAGCCATTGATATTGATTAATCCTGAAGTAGTGAGTGGTAGCAATAAAGCTTTAGGTCAAGAGGGGTGTCTTTCAGTTCCAGATTATTATGCTGAGGTGGAACGTTATACATCAGTTGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 680-292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAMQ010000057.1 Vibrio metschnikovii strain M26X Scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 679 28 100.0 32 ............................ TAGAAAATCTGGCTAAAAGCTGCAACACGAGC 619 28 100.0 32 ............................ TGCGTAATACTGACGCGAGCGTTTATCATTGG 559 28 100.0 32 ............................ TGACTTGGGTATAAGCCCACAAATGCTAACAG 499 28 100.0 32 ............................ TCAAATAAAAGCCCCGCCGAAGCAGGGCATTA 439 28 100.0 32 ............................ ATAAGACCCACGCCCTGCTCTGGCGTTGCCGC 379 28 100.0 32 ............................ TGTTCCGGCATTATATGCTCCTACTGCACGCC 319 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGCTGATTGGTTTCGAGAAAATAAAATTGATGTTCCCTCGTGTTACACTAGCGGATTGGATGTATATAGAACTATTCGCAATAAATTGCACCACGAAGATGGGACAGTTTTTAATGGTAAAGATAACCACGAAATTCATATCTTCCCTGAACATATGGAACGTTTTTACAGACTATTCGTGTGGTGTGGCACTCAAATGGAAAGCGTTGTGTTGACTGAGAAAAATAAAATATAACAAACGCTTCAAGAGGGACAGCCAACGCGCGGCATTTTTACTATGCGTTGGTTCTTGTGGTTACGGTGTTATGCGGAAACTTGGTAGTAGCGTTGGCTGCCCCTTAAGCGGGCGTTAACTGGCAATAAAATTACCCATCTTTTTTCGTTGGACTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACTTTTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : ATATTGGTACTTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACACGTAGCATTTTCATTATGCGTTGAATTTATTAGTTTTTAGTGCAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTAGGCATAGGGAAGTTATGAAACTCGTTCAGCTAAACGAGCATGAGCTAAGAATGTTGTGTGATGGTCAATCTGAGTTCAAGTATATTCTTGACGGGGTTCCACCAAAGCATGTTTTAGCTCGTTCTCTTAATCATTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //