Array 1 31083-28132 **** Predicted by CRISPRDetect 2.4 *** >NZ_UENC01000004.1 Streptococcus intermedius B196 strain G1554, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 31082 32 100.0 36 ................................ ATAGTGAAACCGATGCTGAAGCACAAGCGGAATTAA 31014 32 100.0 35 ................................ GTGTAACTGTTAACACTTGATTAGTATAATAATAA 30947 32 100.0 34 ................................ TACTTGTAATAAAATTAATATCGTTTTTTGTAAA 30881 32 100.0 34 ................................ ATACGTTTGATATTTAATGTTGCGAGTCAGAAAA 30815 32 100.0 34 ................................ TAATCCGTCTTTAAAATTTTTCATATTTATTTTT 30749 32 100.0 34 ................................ TCCGCCTTTAGCAAGAACAGATTTACCTGAACCT 30683 32 100.0 33 ................................ AGTCCTACTAGACCAAAAGCTGCAAGTAAACTC 30618 32 100.0 37 ................................ TGAATCTGCACTCCTTCAAGAACATTACGAAATCCAA 30549 32 100.0 33 ................................ GTAGATACGGAAGAATCAATTTTGAAATTGTCA 30484 32 100.0 33 ................................ TATTTTTTCAGAAGGTGGTAGCGAATTAGCCTT 30419 32 100.0 34 ................................ AGAAAATTACATTCATTTTCACATCAATATTATA 30353 32 100.0 33 ................................ CAGAGGAAGAAAAACAAATACTACACTCAATGG 30288 32 100.0 33 ................................ TGAATATCTATCACGAAGCAGACAACGAACATC 30223 32 100.0 35 ................................ TAAAAAAGTATAAATTAAGCGGTTGGTTCCCTAAC 30156 32 100.0 33 ................................ AATCACTTCTTCCAGCATACGCTTAGAGAGACC 30091 32 100.0 35 ................................ ATCCAGCATTACAGGATTAGCTCCGGCAATGACAC 30024 32 100.0 34 ................................ TGATAAATGCTCTAGTATCACTGTATGAGATTTT 29958 32 100.0 34 ................................ TTGCTTAGTTCGTTTTCTTTTCCAGTAAACGCAA 29892 32 100.0 34 ................................ ATCAATTTTATTTACTGGTATATATTTTAGAGGT 29826 32 100.0 35 ................................ TATGCAAGGTCTTTTCCAAGAAATTACAAACGCTA 29759 32 100.0 35 ................................ TTTGTCAACACCCAAAGAATTTAAGCCAAGCATAG 29692 32 100.0 34 ................................ ACATTTGATGTAACAGATGTTATCACATCAGACG 29626 32 100.0 34 ................................ AAGATAACGGTTAAAAAACAAACGACTAAAACGA 29560 32 100.0 36 ................................ AATCTCTACTACTCTTCAAACGAAAGTGGTTGGAAA 29492 32 100.0 35 ................................ AATATATAAAATTCATGTATAAAATCGTTTTCAAT 29425 32 100.0 34 ................................ TTTGTTGTTATGGCCGATTCCCCATTTTGGTCTT 29359 32 100.0 35 ................................ AAGACAGGAGATACCATTGAACAAGGTACGTTCAT 29292 32 100.0 35 ................................ TCTTAAAAATAATTGGGTAGATGAAGATGGAAATA 29225 32 100.0 34 ................................ GGGATCACATTAAAAAGAAAATTCCGAATGCGAC 29159 32 100.0 35 ................................ AATAACTGCGGTAGTTTGATTTATTTAGGGACAAA 29092 32 100.0 36 ................................ CAATTTTACCGCTCTAAAGGCTTGAAATATGATGTC 29024 32 100.0 34 ................................ CAGGAGGGATTGGTAAAGCCTTATATCAAATTAC 28958 32 100.0 34 ................................ ATCGTATACAATAATTGGAAAATCCTTCAAAACT 28892 32 100.0 34 ................................ GACACTTTACTTTACAACAACGAATCAGGGAGTT 28826 32 100.0 35 ................................ TGAACGCTGTGAATGGATTGGGGTGGACTTAATGA 28759 32 100.0 34 ................................ TCATAGCATAGAATAAGCCTAGTCTTACTGCAGC 28693 32 100.0 35 ................................ TGTTGTTGAAACAGATATGTCAACAAGCAAATCGT 28626 32 100.0 34 ................................ AAAGCAGAAACGTAAGGTTGATTAAACTTAAACA 28560 32 100.0 34 ................................ TCCTTCCTATACAAGATATTCAATTTATACTTTT 28494 32 100.0 34 ................................ AAGAGACTGGATTAACAAATTTAGAAATAGAAAA 28428 32 100.0 35 ................................ ATACTAGCCCCCGTTTTAAACGAACTAGCGACCAG 28361 32 100.0 34 ................................ AGAGGTTTTGAGAAAGTCATAACTAATAACGCAC 28295 32 100.0 34 ................................ ATCAACTTAGATTCGTAAGACTGAAAATCTTTAA 28229 32 100.0 34 ................................ CTGAAGAGTATCGAAGTAGAATCAAACATCCACC 28163 32 90.6 0 A...............A.A............. | ========== ====== ====== ====== ================================ ===================================== ================== 45 32 99.8 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGGGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAAGTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTACTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAGAAGTAACGCGGACAATGCCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //