Array 1 92515-91387 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPB01000205.1 Escherichia coli strain JML088 sequence205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92514 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 92453 29 100.0 32 ............................. CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 92392 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 92331 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 92269 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCAGATTCTTTCCTGTA 92208 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 92147 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 92086 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 92025 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 91964 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 91903 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 91842 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 91781 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 91720 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 91659 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 91598 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 91537 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 91476 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 91415 28 72.4 0 .AA........C..T....T-.G.....C | C [91390] ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1298-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPB01000206.1 Escherichia coli strain JML088 sequence206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1297 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 1236 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 1175 29 100.0 32 ............................. GCGCTAAGGGAGCGCTAACGGGCGAATTTTCA 1114 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 1053 29 100.0 32 ............................. TAGTCAAGCGGTAATTCATCGTCTGCAGATCC 992 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 931 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 870 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 809 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 748 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTTTTATTTGTATGATTCTTAAGTCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCCTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //