Array 1 312528-314278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGGG01000002.1 Pseudaminobacter salicylatoxidans strain DSM 6986 Ga0215683_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 312528 36 100.0 30 .................................... GGTTCTCCTCGACGAACTCCAGACCATAGC 312594 36 100.0 30 .................................... CGGGGTCATGCGCCAGATGAGACAGGTTTA 312660 36 100.0 30 .................................... GCAAGGCAAATCGGTTCGTTCGCTGGTTTT 312726 36 100.0 30 .................................... ATCCTAGGTGACACTGGTGTCACTTCGGCT 312792 35 97.2 30 ..............................-..... GACACGAAGGAGACGGGCTCGACAGTTGCA 312857 36 100.0 29 .................................... TCGGTCGAGTTCATCAAGGCCGAAATCTC 312922 36 100.0 30 .................................... CAATCATCCCGGCGCGTGCAGCCACCGATC 312988 36 100.0 30 .................................... TGACGCGCGTGCAGCCCTCGCCGGAAATGC 313054 36 100.0 30 .................................... AGCCGCCGAAGTTGCCCGCCGCCTTCTGCT 313120 36 100.0 30 .................................... CGGTGGTTACCACGGCATTCGCAGCCCAGA 313186 36 100.0 31 .................................... CTCACCCAGCGGCAGGTAAAGGCGCTGTGTG 313253 36 100.0 30 .................................... CATCACCGCCGTTGAGGATGGACAGGAGGC 313319 36 100.0 30 .................................... GTTCTGGCTTGTCGTCGCGATCTGTGCGGT 313385 36 100.0 30 .................................... AGGTCGGCAGACTGCACGCCGAAGAAGGCA 313451 36 100.0 30 .................................... ACGGAGAAGCCAAGAGCCATCGCGAAGCCA 313517 36 100.0 30 .................................... AACCACGTTGCGATATTCGAGATAATCATC 313583 36 100.0 30 .................................... GGGTGTGTTTGGATGCCCCTCGCAAAACTC 313649 36 100.0 30 .................................... ATTGCAGGAAGGCATTGCCGACCTGCTGGC 313715 36 100.0 30 .................................... CCCTCCCAAAAGCAACCGCCAGCACGGTCA 313781 36 100.0 30 .................................... CTTGCCGATGATGCACCGTCACGGCTGGAC 313847 36 100.0 30 .................................... GAATGTCATCACCGATACTGACTCAATTGG 313913 36 100.0 30 .................................... AAATCCGCGCAATTAAGTGAGGAAGGATAA 313979 36 100.0 30 .................................... CGCCGATCGCTTCCATCTGCAGCGCCGTGA 314045 36 100.0 30 .................................... GGCGCTGATGGTCAAGCGGCTGGTCGGCAT 314111 36 100.0 30 .................................... CGCTTTCGCACACACTACCGTCGGAGCGTA 314177 36 100.0 30 .................................... ACTGTAGACAGTCGATACGTGTTGCGCATG 314243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.9 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : CCTATCGCCCTTTCATCGAGGGTGGGTCGCGGTACGGTGTTCCACCTCGAGCTTCTGCCGACCGAAACGGTGTCGATCGAGCCGCGCCCGACAAGCATGGGGCCGGAATTGCCACGCGGCTACGGCCTGTTCGGAACGAGGGTGCTTCTGGTCGAAGACGACCCGGAAGTCCGTCAGGCCATGACCGCGCTTCTGGAGCGCTGGCAATGCTCGGTGCGTGCGGCCGCTTCGACGGCCGAAACCTTGCGTGCGCTCGGCGACACCGCCTGGGTGCCCGACATCGTGATTGCCGACCAGCATTTGCAAGGAGGCGATCACGGCAGCGTCACCATCTCGGAAGTCCGTTCCCATCTGCGACGCGACGTCCCCGCCCTGATCGTCACCGCCGACATGACCGACGAGGTCGCCCGAATTGCACAGAAGATTGGCGTGGAACTGATGCGCAAACCGCTAAAGCCCGCGGAACTGCGCGCATTGCTGGCACATCTGCTCGCCTGAAC # Right flank : TAGTTGGATGTCGATCTTCCTGATCTCAAAGGGAAAATCGGCATCCGCAGCGCTGCAAAAATGGTCTTTGAAAACGAATCGTGGTGCATTCATTGCGGTTTTTCCAAAGCCCTAAAATCCCGATTGCTCACGGAACATATCCGGATTGTCGAGCTTGGCGACCTCGATCACGGCCTGCGTGCGGCTGTAGACATTGAGCTTGCGCAGGATTTCGGAAACATGGGCCTTCACCGTCGTCTCGCCGACCTGCAGTTCGAAGGCGATCTGCTTGTTGAGCAGACCCTGCCGCAACATCTGCAGCACGCGTAGCTGCTGCGGCGTCAATGTCGCGAGCCGGCGCACCATTTCCGCGCGGTCGGCGCTTTCAGCGTCAAGCGTCGCGGGCTTGTAGGTCTCGGGCACGTAGATCGCGCCATCCATCACGGTACGAATCGCTTGCGCCAGGTCGCTCTTGCGCACAGATTTCGGGATAAACCCCGCCGCACCGTAGGAAAGCGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 107598-108293 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGGG01000008.1 Pseudaminobacter salicylatoxidans strain DSM 6986 Ga0215683_108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107598 36 100.0 30 .................................... GCCGCCAGCGGCGTCAAGCATATCGCCGGT 107664 36 100.0 30 .................................... CGCAAGCCTTCCCAGCATCATACCTCTCCG 107730 36 100.0 30 .................................... GCCCGGTTTCACGCAAAGCTCTGCCGCCGA 107796 36 100.0 30 .................................... ACAGCCTGAATGGCATCGCCCACTGTCATC 107862 36 100.0 30 .................................... ACTGGACAAAGGCGGCATGCTTCTTGTGCT 107928 36 100.0 30 .................................... GGACCCTCATGGCGCTCGGTACGCAGAGCG 107994 36 100.0 30 .................................... TGCTGAAACGATTGGTGACGAGCCCGTACA 108060 36 100.0 30 .................................... GGCGGGTGAATGCGTCGAGCACCCTTTCCT 108126 36 100.0 30 .................................... TGCGCGCGACATCGAAGAACAGCGTGCCCT 108192 36 100.0 30 .................................... CAAGCGGCCCGAGTACGAACACCCCGACGA 108258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Left flank : GACGGTGGCCACGAGCTCCACTTTCGCCGCCGCGCGCAAACAGGAGGCGGCAGTGCCGCCATAGGCACGCATGAGCCCGCCACTGCCCAGTAATATGCCCCCGAACCAGCGCGTGACCAGAACCACCACGCCATCCAGCGACTGCCCGTCGATTGCCTGCAGGATCGGCTTGCCTGCGGTGCCGCCGGGCTCGCCGTCGTCGTTGAAGCGATAGTTCTGGCCCATGCGCCACGCCCAGCAATTGTGGGTCGCGCCGGAATCCGAATGCGCGGCGATGAATTCTCGCGCGGCCTGTTCGCTCGCGACAGGCCCGGCCACCGCATGGAAGCGGCTTTTTCTGATCTCCTGGCTGAAGGTCTCGACGTTTTCGAGGCTGAACATCTTTCGCGTCCTTTTACCCGGACGTCCTAACCCCCATACGCCGCAGAGCCAAGTGCCTGCACGCATGCCAGCAGAAAGTGGCAGCTCGCGGCGGGCCGTAGCCTGTGATGCGAACAATG # Right flank : TCGGTGGCCGTCGATCTTCCTGATTTCAAAGGGAAAATCGACGGTCACGGCGCAGAAAAAGCGCCTCATGGCCCTAGAACAGGGCAAGCTGATCAGGGTTTTTCTTTTGCCTTCGGCGGGCCTGATCGGAAAAGCGGACGATATTTTCATACTGCCTGTCCGTGAACTGAAAGACATAGATGTCACCCCATTCCGGCAGGTGTGATTCGATCTTGCGCAGGTAAGTCTCGAACTGCTCCTTGCCACTGCAGAAACGCAGATAGTTGGAAAGCTGGCTCATTTCGAAGCCCATGTCGAGCAGATACTGACGGAATTTCGTGGCCGCCTTGCGCTGCTTCTTCGTTTCCACCGGCAGATCGAACGTCACTAAAATCCACATCAGCCTGTATCCACTGAGATGAGCGGGCCCCATATTTGCTTTGGCTGGCACCGTCATGGCGCCGGTGCCCCAAGTCCCAGAAGGGCAAGCGGCGGCGGCATGCCAGGCAGTTCCAGCACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGAACTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //