Array 1 720-870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGUY010000013.1 Nocardia cyriacigeorgica strain CNM20110648 20110648S_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 720 29 96.6 32 ..........A.................. TGGGACAGCTCACCGACGGCACGCGCGGAGGC 781 29 96.6 32 .............C............... ATCGTCAAGTGGGCGGGCTTGCCGAAGCAGTA 842 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCAGGCGCGGGGATGAGCCC # Left flank : AGTCCGGGCGTACGGGCAGACAGTGCGACCGAACAGACCGGACCGGACCGGACCGGGCAACCGTGCGAGTCCGAAGAGTCTAGTCCGAAGGTTCGACAGAGTTCTCCGATGCACCCGACGACCGTGGGCATTCGCGCTATCCGTGCTGTGCGTCAGATGCCGTGGGCGCGATACCACCTCGACGCGGCACCTCGCGCCGTGACAAGCGTTGCGGCTCTGATCGGCCATGCGTATCACCCGTTAGCCGGGGAACGGATCTGTGCCGTGCTGTGCGCGGCAAGTAGTCTCACGCTCGAGAAGTAGCCGACTCGGCGGCGGATGAATGTCGGATCGTCGTCGGCGCAATAGTGCTGGAGTTTGATGCGCTCGGCCGTCGGAGACTCGAGTATGAATACTTCGGGCGATGGTTGTTGTTTGAGCTGAATCCGCTGGCGGGCTGTGGAGGTGGAAAAGTAAACGAAGTTTCGGCTGCAGGTGGGTAGAGTGCCTGGTCAGGAATT # Right flank : CAGATGCATAGTCGCGCAGCCGCCCATCGCGCCGTGGTCCCTGCGCACGGACGGATGAGCCCGCGAACCAAAGTATGGCCCGTCACGGCCCTGCGCTACCCGCTATACGCGGTGCCGGGGAATTGGCTCATGCTGGAGAAGTGACCGAACTCGGCAGTGCACGAATGTCGTTGCGGACGCCGACCGTATGTGGCTTTTGTTCACCGACTGCTGTCCTGGTGCTGGGGGACTGTCGTTCAGGATCTGAGCGTATCGCTGGCTACCAGGCTTCAGGTGGCAGAAATTCAGGCTGGCTCTGTCGTCTTCCGATCGGCTGGTCGGAATAGGCAGAGTGGTGAGATCAATCTTGGACGCGTGACTTGTTTGGGTCGGCACATCTATTGCAGGTGCGGTGCTCGTGTATCGATCGCATGAGCACCTGCCCTGGCTGTTATCGGCACGCCAGTCCAACAAGTTGAGCAGTGGGCCGCGCATTCCCGCGTTTGCGGGGAACGATGAAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11094-12890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGUY010000013.1 Nocardia cyriacigeorgica strain CNM20110648 20110648S_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11094 28 100.0 33 ............................ CACGGCAGCGTTCGCAGGGCTGGCATCGACGAC 11155 28 100.0 33 ............................ CGCTGCCGCGTCGAACGCGCGGCGCGGTGCCTC 11216 28 100.0 33 ............................ CACAGGAGGCGCCCACCCTGAGGGGCAGGGGTC 11277 28 100.0 33 ............................ CAGAGGACGGCCGTTGTTGTCGACCGCCCCGAG 11338 28 100.0 33 ............................ CGGTGCGCGGCCGCGCGGGTGAGGGCAGCGTGT 11399 28 100.0 33 ............................ CGACGGGTTTGCATGCGCCCAGGTCGCTGGAGC 11460 28 100.0 33 ............................ CAGTGCCAACGTCATTGCGACGAGCGAGTCGAA 11521 28 100.0 33 ............................ CAGGCCCCCGGTCGCCATCGCCGGTACGGAAGC 11582 28 100.0 33 ............................ CTCGACGCAACCCGCACGATGGTCGACGCGGCC 11643 28 100.0 33 ............................ CGCCGGAGCGAGCGCCTGCACGACAGTCGAGAC 11704 28 100.0 33 ............................ CTTGCCGCCACCCTCACCGAGGTGGCCGCCGGT 11765 28 100.0 33 ............................ CCGCATGAGCTCAACGATGTCGGTGGCCATCGT 11826 28 100.0 33 ............................ CTCCCCAGCCCAGCGTCTTTTCCGGCAGATGCC 11887 28 100.0 33 ............................ CGCCCGCGACGCCTGGAACGGCATGGCCGCCGA 11948 28 100.0 33 ............................ CAACGCGCTCGACAAGCTGCCCAACCATGAGGG 12009 28 100.0 33 ............................ CAGCATCCACCCGTGGCAGCACGAAGACGACAA 12070 28 100.0 33 ............................ CGGGGTAGGAATGGCTTTCTTCCGGGCGGGCGA 12131 28 100.0 33 ............................ CAAGGCCGCCCTGCCGGGTGCCGACCTCGCCGA 12192 28 100.0 33 ............................ CCCCGCCAGCTCGCCGGTATCCGGATCGACCGG 12253 28 100.0 33 ............................ CGCCCCCGGAATCCCTTCATCCACCTCATGGAT 12314 28 100.0 33 ............................ CAACCACCCACAACACCCATTGAAACCGCAGGT 12375 28 100.0 33 ............................ CCCGGGTGGCGGACAACGACTCTGCCGGACACC 12436 28 100.0 33 ............................ CGACGGCGGAGACTCCAGCTTCCACGAGATCAT 12497 28 100.0 33 ............................ CAGCTCGACCGCGACCCCCGCCAGCGCGACGAC 12558 28 100.0 33 ............................ CGTATACCGGGTCGCGGTCGTCGTGGCCCTCGG 12619 28 100.0 33 ............................ CAGCACTACGCGCCGGACCAGCACACCAGGGAC 12680 28 100.0 33 ............................ AGTCGGCCGATCCACCATGCAACGCTGGGAATC 12741 28 100.0 33 ............................ CATCGCGCCGACCGGCGGGCCCGCGAACGTGTG 12802 28 100.0 33 ............................ CAAGACGATCATCTACTCGGCCGAATGCGGCCG 12863 28 82.1 0 ..........T.AA.A....A....... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.4 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : AATGGGATACCGACATCGTCGAACTCTGGGATCGGAAGGGCAACGTAGCAGGCGGCACGTCCTACGGTGACGAGGAAGTCCCGTGGTAGTGCTGGTTCTCAGCGCCTGCCCTGCTGGACTCCGCGGACACCTCACCCGGTGGTTCCTGGAGATCAGCCCGGGAGTGTTCGTCGGCGTTGTCAGCGCGAAGGTGCGGCAACTGGCGTGGGAACGCATCGTGGATCTATCCAAGGACGGCCGCGCGATCATGATTCACACGACGCGAGGCGAGCAACGGCTGGCATTCAAGGTTCATCGCCACGATTGGGAGCCAATTGATCTGGACGGGATCCACCTGATGCGGCGCCCCCACACCGCCGACCAGAAACAAGGCGGCGCACGTTCCGGATGGAGCAAGGCAAGCCGATACCATCGAGCGTCTAAACGCCGCAGGCATGGAGACACGAACGAAAGTGAATGAAATTCGCCCGAACAGCGAGTAAACGTGCAGATCAGCAAGT # Right flank : CTCCTTGGTGACGGCGTAGTTGACTTCGCCCTCGGCGCATCTCGCACACGATGCGTCTCCGCACGCGCGGGGGACGAGGATCGGCTTACCGTTGCCTGCTGCGTCGGGTAGAAGTCCACGATGGGGTGGTGTCTATCGGTACGAAAGTGCCAGAAAATGGCCTTGGCAACCTGTTGCCGGACAGTGTGCTGGCGCGGGGGCTAGAGTTGATGGTCTGGGAGGTTGCGGTGGTCGGATGAGGTCCCGGCCACAGCGTGGAGAGGTGGTGGCATGACTCAGCATCTGGGCGAGGCGAACGTCGAGCAATCGGCTGCCTCGCGGCCGGGCGGTGCGCCGGCCACCTCGTCCGATGGTGCAGCGGCACAACCCGCACGGCCAGCGACCCCAGGTCCCAATCCTGACGTGGTGCGCCAAGGGGGCACGGCGGCGGTGCCGACCTCGGCCTCGCGGCGGGTGCGGGCCCGCCTGGCCCGGCGGATGACCGGCCAGCGGGGCATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1578-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGUY010000030.1 Nocardia cyriacigeorgica strain CNM20110648 20110648S_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1577 28 100.0 33 ............................ CGGCTACCGCCGCATCGACGACTGGCGCAAACG 1516 28 100.0 33 ............................ CCCATCCAGATCAACCTTGGCTTGGGCGTCCGA 1455 28 100.0 33 ............................ CGCCACCGCGAACGCCTCGGCGATATCCGCCCG 1394 28 100.0 33 ............................ CAAGCCCGCCGAAACACCCTCCCTCCCAGGCAA 1333 28 100.0 33 ............................ CTCGCCGACATGCGGGCCGGCCGCATGAGCAAC 1272 28 100.0 33 ............................ CGCTACCCGGCCCGACCATGGTTCACGCCGCGA 1211 28 100.0 33 ............................ CAGCGGCGACGCCGCAAGGCTGAGGCGGCCGAG 1150 28 100.0 33 ............................ CCGGGCGCCCCGCCAGATTCTGCAGCAAGAGTT 1089 28 100.0 33 ............................ CCCAGCAAGCCAACAAACGAGCCGCCGCCCAAC 1028 28 100.0 33 ............................ CCGATAATGCATCGCTGCGAGTGCGATGTCGTC 967 28 100.0 33 ............................ CTACGCGGGGCGCCGAGCTGCGCCCGCGCCAAT 906 28 100.0 33 ............................ CGTGCGCGTGTATCGGCGCATGCGCCGCCAGGA 845 28 100.0 33 ............................ CGTGACCAGCGTCACGCGATGGCCCGGGGTCGA 784 28 100.0 33 ............................ CCCCACCGGCGGCGCGGCGGTCGCGGCGATGAC 723 28 100.0 33 ............................ CTCGCCCCGCACGAGATCGCCGAACAGATCTCG 662 28 100.0 33 ............................ CGAGGCGCGACCTTCGCCAGTCACGACAATTGC 601 28 100.0 33 ............................ CCCGTGCCCGGCTGCCTTGCCGAGGTGGTCGAC 540 28 100.0 33 ............................ CACGTCGGGGGTCACGCTGCGCGCTGCATTCAC 479 28 100.0 33 ............................ CGGCGCGCACCCGTCGCCGGTCGGGATCGTGCT 418 28 100.0 33 ............................ CGATCAAGATGTGGCCGTTCTACTACGGAATGA 357 28 100.0 31 ............................ GGTACGCGTCCTTCTCCTCGACGCGGATCGT 298 28 100.0 33 ............................ CAGGGTCCAGACGAGCAGGAAGATATCCAGGAT 237 28 100.0 33 ............................ CTCCGGCGGGAACGAAGGTGTCGGACTCCTACA 176 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 33 GCGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : AGGCTTTCGCACCGTCATCGACTGCCTCGCCGCCAGCGCCCCCGATGCCGACCTGGTCGCTGCTGTCGACGCCCGCGGCTTCCTGCTCGGCGCTGGCGTGGCCGCCACCCTCGGTACCGGTGTGCTCGCCGTACGCAAGGCGGGCAAACTGCCGCCGCCGGTCGTCACCCGCGAATACGACCTCGAATACGGTAAGGCGGCTCTGGAGATCCCCGCCGACGGCGTCGATCTGGCCGGCCGCAAGATTCTGCTCCTCGACGACGTCCTCGCCACCGGCGGCACCCTCGCTGCCGCGGCCGACCTGTTCACCCAGGCCGGAGCCGAGATCGTCGCGGCTGCGGTCGTTCTTGAACTGGAATCGCTCGGTGGGCGCAAGCGTCAGGGTGATTACCCGCTGACGTCGATCGTCACCGTCTGAGCGCACTCCGCAGCAGGCCACGGAGGTGACCAAAGTGAACGAAATTTCGGCTACCGGTGGGTAGAGTGCCTGGTCAGGAAGT # Right flank : CCGTGCCCTGTGGATCAGCGTGTGAATTCGCCCAGGTCCTCGATGTATTCGCGGTATTCGGTCTCGGCGTGGTCGAGCAGGCGGGTGATCTCGGTTCGTAGGGCGGGGGTGGTGGCGGGGCGGACGGTGCGGGTGCGGGTGCCGGTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //