Array 1 59992-58598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================================================================================================================== ================== 59991 37 83.8 36 ...........TGT.....AC.G.............. TGCGGTTCTCCACAGACGACGGGGTAGACCTCGCAC 59918 37 86.5 211 ..........T..T......C.G......G....... CATGCAGCCTACGCCGGGTAGCGGCCACCCCCCACCCGGAGGCAGCACTGACAATCCGGTTCACGTGCATGAGAGTGGTGCTTCGGAACCCCAAGTGCACACGAAACACGCTACCCACTCCGAAGCAAGAACAGCCAGTTCGGCACTATTTGGGCCTCGCTGTCGGCCCTTTGCACGGCCTAGGTACGCTGAATCATGCACCTCAGCTACC 59670 37 100.0 38 ..................................... GGCCTCGTCGTTCGTGGTGTTCGCGGCCCTCGCCGCGG 59595 37 100.0 36 ..................................... TGCCTCCGCTTCTGGTGACGGTGCTGGGAGCGCAGC 59522 37 100.0 38 ..................................... ACCAGGCTCAGGGCCTGCTGTGCCTGGCGACGGCGCGA 59447 37 97.3 36 ...............................T..... CTCTTCAAGTGGAAGAAGCTGATCGTCCCCGCCTTC 59374 37 91.9 37 .............T.....AC................ TCCCTGGTGGCGGCGGTGACGTCGACTCCCTTGCCGA 59300 37 86.5 38 .............T.G..AAC................ CTCGATGACGTGCTTTTCGAGGGCCCGGCGGACGTCGG 59225 37 89.2 36 ..........T..T.....AC................ CAGAGGAGACCGGCGACGAGCAGAACCAGGACGACC 59152 37 89.2 37 ..........T..T.....AC................ ACCAAGAGCCCCGACCACGCCGCGCGACGGGCTGAAG 59078 37 91.9 35 ...........T.T......C................ CGCGAGCGGCTGTGGCAATCCGCGGGTGGTCGGTG 59006 36 81.1 95 .......CT....T.-...AC..G............. TTGAAGGCGACGATGGCGTAGATGTCGACGGTGAGGTGACCGTTGCCTTTCAGGGCGAACGCCGGTTTCCCGATCGGACGGAGCATGCTGGACGG 58875 37 89.2 38 .....C.......T.....AC................ GACGTGGACCTAGGGACACCCGAGCCTGTGGAGCTGAC 58800 37 83.8 37 .............T.....AC.G.......C.....A TCGACTGCATCGAGGACAAGACGGCGCTGTCCGCCTG 58726 36 89.2 56 ..........G...-.....T....C........... CGGCAGGCCCTGACGGCGAGCTACCGCACGGCGTATGGCGCTCGTAGCCTCTCCAC 58634 37 67.6 0 ....T..C..T.TT.....AC......C....C.CCA | ========== ====== ====== ====== ===================================== =================================================================================================================================================================================================================== ================== 16 37 89.2 54 GTGGCGGTCGCCCCTCGGGGGGACCGAGGATCGCAAC # Left flank : GCCCGGACCGAAAGGCCAGGCGGGCCCGCGGCAAGTCCGATCCGATCGACGCCTACGCGGCGGCCACCGCCGTCCTGTCCGGTCGCGCGAGCGGAACACCCAAGAGCCGGAACGGGATCGTGGAAGCGATCCGCGCTCTGCGTGTGGTCCGCAAGAGCGCCGTCAAGGCACGGACGCAGACCATCAACCAGATCCGCTCTCTGATGGTCACCGCTCCCTCCGCCCTGCGGGACAAGCTTCGGGGACTGCCCACCGGCCTGCTGATCGACACCCTCGCCCGCACCCGGCCCACCGGTGATCTCACGGACCCGGCCTGCGCGACCAAGACGGCACTTCGCTGCCTCGCCCGGCGCTACCAGGTCCTGCAGCAGGAGATCAAAGAGGCCGACGCGGACCTCGCTCCCCTCGTGAGACGAGCCGCTCCCAGCCTCGTCGCCCTGCCCGGAGTCGGGACCGAGACAGCCGGCCAGCTGCAGCGCGGTGTGCACCGCGAAGGCGAC # Right flank : ATGCCAGGAGTGTCGATGGCCGGTAGTACGACTTCGAGTGGTGATCCTTTCTTGGGGATGGCCCGGCCTTCTTGGGGTTCACTGTGCCCGCGAACCATGTTGTAGGTCCCGAAGCAGACAGTCCACTGCACGTTTCCTCTTCTGCCCGTTTCTGCCCGCGGGCGTAGAGCAGAGCCACCACTTCGGCGTCGACCAGGGCAGGCCGCACCGGGACGAGAAAACGGCTCGGTTTGTCGGCCAGCACGCTTACGAAGGAATCGGTGTCGTTGAGGCGTACTCAGGGCCAGCACGACAAGTGCGGCGTTCGTAGCCCCATCCAGTGAGTCGCCCCAGGAGTGGGAGGTGCCATTGCACGAGTTTTTTGCCGTACACGCCCATCACTCTCTGGACGGCATCCCCGGACTTTCATCCGACTCCAGCGCATATTCCAGCCAATGTCGGACATGGTGGCTTTGTAGGCGAGTTCCGAGAACGTCTGTTGCTCAGCGCTGGGATCGCCT # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:-1.55, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCTCGGGGGGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.00,-15.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 62496-61000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 62495 37 100.0 35 ..................................... GACTGGCCGAACGCACAGCGGGCGGCCCGGACCGG 62423 37 89.2 35 ........T..........GT........T....... CTCGGGGTGGGCGGAGATCGCTCCGCGGAGCCGGA 62351 36 83.8 36 A.......T...A....A.-T................ CTCGGCACGGACAAGCGCCTGTACTGGACGCACGAC 62279 37 94.6 38 ..........T..G....................... GAGTCGATGGGGTTGCCCCGGTACGTCGTCAGCAAGGG 62204 36 94.6 38 .......C................-............ AACCGTCACCCGCGGCTGACGGTCCCCCTTGTCGGGTC 62130 37 94.6 36 ....T.....T.......................... GACGGACCTAGGGACACCCGAGCCTGTGGAGCTGAC 62057 37 100.0 35 ..................................... CTGACAACGGCGCCAACCTTGCCGGGGCCGTCCGG 61985 37 94.6 35 ........T...........T................ CCCACAGTGGGAAGCGACAGGCGCCGGGGAAGCTG 61913 37 94.6 34 ....T...............T................ ACCAAGTGGGAGGACGAGGAGACTACCAACACGA 61842 37 97.3 35 ...................G................. GTCGGGTGCTGTACCCGCCCGATCGAGCGCACCGG 61770 37 83.8 36 ..T.....T...T....A.GT................ CGCACGGACCGGCTTGAGAATGACTCCGGCCAGCTC 61697 37 97.3 36 ...............T..................... GAGGGTGTCCTCTTCGATCGGGACCCGCGCGCGGGC 61624 37 91.9 36 ..........T....T.............T....... TTCACCGGGTACTCGATCGTCTCACCGGAACCCGTG 61551 37 94.6 36 .C.................G................. TCCTCCACCCACGCGCGGCCGACGAGTGCGTGCGTC 61478 37 94.6 35 ........T...........T................ TATGTGCAGTACGACACGCGGACCCTGCCAGGGGT 61406 37 89.2 36 .C......G.....C....G................. GAGGCGGACACGTTCAGCAAGCGTGGCGTTCCGCTG 61333 37 83.8 38 .......C........A..G...TT........T... GACTTGGCCGTCGCGCGCTTGTGGGCGGACTCGTCGGC 61258 37 86.5 36 .............CG....G..T...T.......... GACTGGCCGAACGTACAGCGGGCGGCCCCGTGGCGG 61185 37 78.4 37 A.......TA......AA.GT...T............ GGCCGGCCCCACGAGTCGGCCATCATCTGGGCCGATT 61111 37 89.2 38 ............A...A..GT................ TCCGCCTCGGAAAGGGCGGTCACGACGGTGCCGAGGTC 61036 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 92.0 36 GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Left flank : GCCAGTGACCCAGCGACAAGGTAGTAGTGATCCGGGAAGTACTCGATGTGCTGGTGCCCGCCGTCGTCCATCTCCGCAATCGACTGAACTTCGTCAGCAAGAGCCGTCAAGCCCAGCCGGTCACCCTCGATGAGTAGAGCGCTGCGCTCCGAGTCAACTCGGATACGGACACCCGGGCCGCTGGTGCTCACCACCTCGACTGAAGCCAGTTCAGTGCCCCCGAAGCTCGGTTCAGCCGAGGCGGTGGTTTCCGTGCCACCCTTCCCCGCGGCGAGGGCGAAGGCCAGGACGGCGAGTTCCGCCGCACCGCCCGAGACGTCCACCCCATCCTCATCGGGAAAGAACAGAACCCTCATCCGCCACAACCCCTTCGGTTCCACAACGCCAGACTCAACGACCAGAGCCGTTGCCCCTGGTCAACCGGGCTTCCCCGGCTCAAGGCCAGCCGTCACGGACATTACCCACCGCTTGACGAAACCCATAGGGGCACCCCCCCCCGC # Right flank : CACCAGTTCACCCGGGGTCTGACAGTGAGGATGTCCTTGGCGTCGTTCGGGGGTCTGACTCTGGGTCTGACTGACGTTTCGGCTGTCCGTCTGTTGAATTGTCGGCCGCCGAACGACGCCACCGCGTGTGCTCGCGGGTGTCCGTGACCTCGTAGGAGCTTGGCCACCAGCCTCATCACTGTCTTGTCCGTCAGCCTGGGCAGCACACGCTGCTCCGGTACCCATACGGAAGGACGGCAGAGCCGAGCATGACAGCGCCCGAGATAGCGGTGATCGGCGGAATCGACACCCATACGGACGTCCACCAGGCCGCAGTGATCGACTCGATTGGCCGCCACCTGGACACGCAGCCGTTCGAGACGAACTCGGCCGGCTACGAGCAGCTGCTGGCCTGGCTGCGTGCCCAGGGCGACGTCATCGCGGTCGGGATGGAGGGCACAGGGGGCCTACGGCGCCGAACTCGCCCGGTTCCTCACCGCCAGCGGCATCACGGTCGTCGA # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-12.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 67625-64519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 67624 37 100.0 37 ..................................... CTGACGTTCTGGGCAGCGAAGGAGTCGGCGGAGGCGG 67550 37 97.3 36 ......................G.............. GCCATCGGCGCCGTGGCCTGGTGCGTGCCGTACGTG 67477 37 100.0 37 ..................................... AGCGCACCCGCATCGAGCAGCTGTCCTGGGTGCTGGT 67403 37 100.0 37 ..................................... CCCAAGCCCGCCCGGGGCCAGAACGGGAAGGGTGGCG 67329 37 100.0 35 ..................................... CACAGGCCGAAGTGGGCGAGGACACCGGTCGCGAA 67257 37 100.0 35 ..................................... CTGACTGCGAGACGTCCGCCGGAGCATCCGCCACG 67185 37 97.3 35 ............T........................ AACCCAGCAGGTCACGGCCGCCATCAGGGACGGGA 67113 37 100.0 35 ..................................... GCCGCGGCCCTGGCCCGGATCACCGACGAAGTGCT 67041 37 97.3 37 ...................G................. ACCTTCCGCGTGGGCAGGGGCGGGCAGCGCCGGGCGG 66967 37 94.6 36 ..........CG......................... CAGCGCGGCATCAGCCTCGCGACGCCTGGCCTGGAG 66894 37 89.2 39 ..........C......A.CT................ CTGCACCACCGGCTGGTCGGGGAGCTCTACGGCATCGGT 66818 37 97.3 34 ...............T..................... CCCGAACCGGGGACCCCCCGTGATGATCAGATTC 66747 37 78.4 36 .GA.T..CG....C...CT.................. GGCGCGCTCGTGAAGGAGATGAAGAAGCGCGGGCTG 66674 37 89.2 36 ........T........................T.CG TCGGAATCGCCTCGCTCCTCGGTCTCGACTGGTCCG 66601 37 97.3 37 .......................T............. CCGCTTCCTGCTCGTCGTACAGCTCGGCGGCGCGGGC 66527 37 89.2 38 T.......T.C.....A.................... ACCAGCGGCACGACAGGCACGTCGGCCGGCACGCCGGG 66452 37 89.2 36 .........TC........G........A........ ACGCTCCTCCGTCTGGCGGAAGTGGGCGGAGTCGGG 66379 37 100.0 36 ..................................... GCCGGAACGCTCGACAGCCGAGTGCGCCGAGCCCTC 66306 37 97.3 36 ...................G................. GCGTACTCCGCGATCCGGAAGGCGAGTTCGCCGACG 66233 37 75.7 33 ..............C.CACG....T.....A..A..T GTCGAGCGCGCGTGGTGGACCTGTACGACGATG G [66203] 66162 37 100.0 36 ..................................... CGGAGTTACAGATTCGGAGGTGACGCCATGGCTGTG GT [66149] 66087 37 97.3 35 .......................T............. GACTGGCCGAACGTACAGCGGGCGACCCGGTGCGG 66015 37 83.8 35 ........T.C..C.....GT........T....... CTCGGGGTGGGCGGAGATCGCTCTGCGGAGCCGGC 65943 36 83.8 36 A.......T.C.A......-T................ ATCGACGCGTCCAAGCTGGGCGCAGACACGGCCGTA 65871 37 91.9 37 .G........C.T........................ TGCACGGCGGTGCTGATTCCGGCGCCCATGCCGTTGA 65797 37 94.6 35 ..........C..............A........... CAGACCAGACCGGTGGAGCCCCGGCCGTCCGCCGC 65725 37 91.9 37 .C........C........G................. GACCACGACCAGGCCGCAGAGCAACAGCGCGCGGCGG 65651 37 83.8 37 ....AA..T..........GT...T............ CACCAGCACACGGACAACCCGATCGATACGGACTACT 65577 37 81.1 37 ........T.C...CA...GT...T............ AGGGTGTCGGCGGGGCCTGTCGTGTGGGGGAGTGCGG 65503 37 94.6 36 ..........C.G........................ AACCAGATTGCCGATGCTCTCGGCCTGGACGAGCAG 65430 37 81.1 38 ....T...A.C........G....G.T........G. CAGGCTGGCCCGGTACGCGAGCCGCGTCGGCTGCTGGG 65355 37 75.7 33 ..C.TA........C.C.C.....T.....A..A... GTCGAGCGCGCGCGGTGGACCTGTACGACGATG 65285 37 91.9 36 ..........C.......A...G.............. CTCTTCCACGTCGCACTCAGCCGGATGCGGGCCGGC 65212 36 91.9 38 ..........-..C............G.......... TTCGGGAACCAAGGTGATCCGCCCTGGCAGGGGCGGTG 65138 37 94.6 36 ...............T....T................ TTCGCGTTCGAGGCCATCTGCTCGTTGAGGCGGTAC 65065 37 89.2 34 ...A......C....................T....T GCTTCCGGCACGGTGGGGGCGACGGCCAGCTGCC 64994 37 81.1 36 .G......T.C.T......G....T.G.......... ACCGAGTACTTCACGAACACCGGCAGCGGGTCCGAT 64921 37 86.5 34 ..........C.....C..G....A........G... GTAAGGTTGTGTGTGGTCCTGGCACCGGCTGCAG 64850 37 89.2 36 ...T......C...............C....G..... TTCGCCTGCGCCGGGACGGCGGCCGCAGGCCGGGCC 64777 37 86.5 37 ..........C.T..T...G........A........ GCCGGGGTCGGCGGGTCCAGCAAGGGCGCCACCGCAG T [64765] 64702 37 94.6 38 ..............G....G................. ATCGACTGCATCGAGGACAAGACGGCGCTGTCCGCCTG 64627 37 89.2 36 ..............G...AGG................ ACCTGGACGAAGTTTCCGTCAGCAAGTCCGTCCTGA 64554 36 89.2 0 ..........CG......-G................. | ========== ====== ====== ====== ===================================== ======================================= ================== 43 37 91.5 36 GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Left flank : ACCCAACACCTCCGCCGCCAGAAGCGCACCCGCACCCTTGTGCGGAACCCCTACCCTGCCCCCAAGACGCTCAGCCCGCTCCAGAGCAACCTGCCACGCACAACTCCCCTTCCCCACGTCATGCACGAGGGCGAGGTACTCCGCGGAAGGCCCCATCCCGAAGGCACCTCCGAAGACACACGCCAGCGAAGCAGATCCCCGTAAGTGATCCTGCACCGTGTGCCGTAAGCCGCTGACGTCGCTACGACTGTGGGCCCACAGCGGCTCGCCAGGGTCTTCGCTGTCTCCGGGTTCCACCGATAGGCTCGACATGGTCAGGCAGCCTATGAGGCAGCACTGACAATCCGGTTCACGTGCATGAGAAGGGTGCTTCGGAACCCCAAGTGCACACGAGACACGCGACTTGCTCCGAGGTAAGACCAACCGGTTCGGCCCCATTTGGTCCTCGGCGTCGGACCTTTGATCGACCTAGGTACTCTGAATCATGCAGTTCAGCCGCC # Right flank : TGACCGAGAGGGGGCCAGATGCCTCAGCCCCCCCGTTACCTTCTTCCTGGCTCCGCAATGGGGCTACCGGCCTTCGGGTCCGGCATGACTTCCCCCCCCTTGTTGCGGTTGATGATCCGGGGGGTGGTGTCACCGGGCCCGGAGGCATCGACGGACCGCTGATGAGGGGCTTGAGCACCGGCTTACCCGAGCCGGAGGAACTCTCCGTAACGTGGGTGTGGCAGCTCGGTGCCGAGGCAAGGCCGGACGAAAGCGTGAGCGGAGGGGCTCGCACGTGATCGACACCAGCGACATCGACGTCTTCCTCGGCCTGGATGTCGGCAAGGGCGAACACCACGCCACCGCCGTCACCCCGGCAGGCAAGAAGGCCTTCGACAAGCGCCTGCCCAACACCGAACCCAAGCTCCGCGAGCTCTTCGCCAAGCTGCAGGCCAAGCACGGGACGGTGCTGGTCGTGGTCGATCAGCCCGCCTCGATCGGTGCTCTGCCGCTGGCGGTCG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.70,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [81-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 6390351-6390183 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 6390350 27 96.3 39 ........................T.. CCGCCACCGCCGGAGGACGAGCCGCCGCGGTAGCCACCC 6390284 27 100.0 48 ........................... TTACCGCCGCCGCCGGAGGGGGAAGGGGAGGAGGAGCCGCGGTAGCCA 6390209 27 96.3 0 .................G......... | ========== ====== ====== ====== =========================== ================================================ ================== 3 27 97.5 44 CCGCCGGAGGAGGAGCCACCGCGGGAG # Left flank : CCTTCGGCTGGACGCGCTTGCCCTGCTCCAGCACGATCTCGCCGTTGACCTCGACGCGGGCCTGCTCGATGAGCTCCTCGCAGGCGCGGCGCGAGCCCATGCCGGCACGGGCGAGCACCTTCTGCAGGCGCTCGCCCTCCTGCTCGGCGCCCGGGAAGGTCTTCGGGGTCTTGATCACGGGCTTGTCGGCGTACCGGTCGCGCACGCGCTCCTCGATCCGCGCGTCCAGCTCGCGGGGGCGGGACTGGCCGCTGCGGCTGCCGGGGCCGCGGCGCGGGCCGCCGGCCCCGCCGATGCCCGGGGTCTTGGAGGTCTTGGGGCCGCCCTTGGCACCGCCGCGGGCCGCCGCGCCACGGGCGCCGCCGCCACCCGCGCGGGGGCCGCTGCGGCCGCTGCGCTCGCCCTCGGGGCCGACGTCGTAGCGGCGCTCCTCGGGGCGGGGGTTGCGGGGGCGCTGGGGCGCCTGGTCGCGGTCGCGGTCGTAGCCGCCACCCTGGGAG # Right flank : TTACCGCGTCCGCCACCACCGCCGCCGCTGTTCCTGTTGCCGCCGCCGTTGCCGTTGCCGCTGCTTCGCATCAAAGTTCCGTCGTCTTGTCGTCTTCATCGGTATCCGGTGCGTCCGGATCGAACGACGGAACACCCTCTTGCGTCTCTGCTTCGATCGCGTCCGCCTCGGGGAGGAAGGGCGCGAGCTCCGGGAGCTCGTCCAGGCCGCGCAGGCCCATCCGCTCCAGAAAGTAGTTCGTCGTCCTGTACAGGATCGCACCTGTTTCGGGTTCCGTGCCCGCCTCGGCCACCAGACCCCGCTGCAGGAGGGTCCGCATGACCCCGTCGCAGTTGACCCCGCGGACCGCCGAGACCCGCGATCGGCTGACCGGCTGGCGGTACGCGACGACCGCCAGGGTCTCCAGGGCCGCCTGGGTGAGACGGGCCTGCTGGCCGTCCAGGACGAAGGCCTCGACGGCGGCGGCGTAGGCGGGCCGGGTGTAGAAGCGCCAGCCCCCG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCCGGAGGAGGAGCCACCGCGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.60,-2.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 8624088-8627193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 8624088 37 100.0 37 ..................................... CTGACGTTCTGGGCAGCGAAGGAGTCGGCGGAGGCGG 8624162 37 97.3 36 ......................G.............. GCCATCGGCGCCGTGGCCTGGTGCGTGCCGTACGTG 8624235 37 100.0 37 ..................................... AGCGCACCCGCATCGAGCAGCTGTCCTGGGTGCTGGT 8624309 37 100.0 37 ..................................... CCCAAGCCCGCCCGGGGCCAGAACGGGAAGGGTGGCG 8624383 37 100.0 35 ..................................... CACAGGCCGAAGTGGGCGAGGACACCGGTCGCGAA 8624455 37 100.0 35 ..................................... CTGACTGCGAGACGTCCGCCGGAGCATCCGCCACG 8624527 37 97.3 35 ............T........................ AACCCAGCAGGTCACGGCCGCCATCAGGGACGGGA 8624599 37 100.0 35 ..................................... GCCGCGGCCCTGGCCCGGATCACCGACGAAGTGCT 8624671 37 97.3 37 ...................G................. ACCTTCCGCGTGGGCAGGGGCGGGCAGCGCCGGGCGG 8624745 37 94.6 36 ..........CG......................... CAGCGCGGCATCAGCCTCGCGACGCCTGGCCTGGAG 8624818 37 89.2 39 ..........C......A.CT................ CTGCACCACCGGCTGGTCGGGGAGCTCTACGGCATCGGT 8624894 37 97.3 34 ...............T..................... CCCGAACCGGGGACCCCCCGTGATGATCAGATTC 8624965 37 78.4 36 .GA.T..CG....C...CT.................. GGCGCGCTCGTGAAGGAGATGAAGAAGCGCGGGCTG 8625038 37 89.2 36 ........T........................T.CG TCGGAATCGCCTCGCTCCTCGGTCTCGACTGGTCCG 8625111 37 97.3 37 .......................T............. CCGCTTCCTGCTCGTCGTACAGCTCGGCGGCGCGGGC 8625185 37 89.2 38 T.......T.C.....A.................... ACCAGCGGCACGACAGGCACGTCGGCCGGCACGCCGGG 8625260 37 89.2 36 .........TC........G........A........ ACGCTCCTCCGTCTGGCGGAAGTGGGCGGAGTCGGG 8625333 37 100.0 36 ..................................... GCCGGAACGCTCGACAGCCGAGTGCGCCGAGCCCTC 8625406 37 97.3 36 ...................G................. GCGTACTCCGCGATCCGGAAGGCGAGTTCGCCGACG 8625479 37 75.7 33 ..............C.CACG....T.....A..A..T GTCGAGCGCGCGTGGTGGACCTGTACGACGATG G [8625506] 8625550 37 100.0 36 ..................................... CGGAGTTACAGATTCGGAGGTGACGCCATGGCTGTG TG [8625562] 8625625 37 97.3 35 .......................T............. GACTGGCCGAACGTACAGCGGGCGACCCGGTGCGG 8625697 37 83.8 35 ........T.C..C.....GT........T....... CTCGGGGTGGGCGGAGATCGCTCTGCGGAGCCGGC 8625769 36 83.8 36 A.......T.C.A......-T................ ATCGACGCGTCCAAGCTGGGCGCAGACACGGCCGTA 8625841 37 91.9 37 .G........C.T........................ TGCACGGCGGTGCTGATTCCGGCGCCCATGCCGTTGA 8625915 37 94.6 35 ..........C..............A........... CAGACCAGACCGGTGGAGCCCCGGCCGTCCGCCGC 8625987 37 91.9 37 .C........C........G................. GACCACGACCAGGCCGCAGAGCAACAGCGCGCGGCGG 8626061 37 83.8 37 ....AA..T..........GT...T............ CACCAGCACACGGACAACCCGATCGATACGGACTACT 8626135 37 81.1 37 ........T.C...CA...GT...T............ AGGGTGTCGGCGGGGCCTGTCGTGTGGGGGAGTGCGG 8626209 37 94.6 36 ..........C.G........................ AACCAGATTGCCGATGCTCTCGGCCTGGACGAGCAG 8626282 37 81.1 38 ....T...A.C........G....G.T........G. CAGGCTGGCCCGGTACGCGAGCCGCGTCGGCTGCTGGG 8626357 37 75.7 33 ..C.TA........C.C.C.....T.....A..A... GTCGAGCGCGCGCGGTGGACCTGTACGACGATG 8626427 37 91.9 36 ..........C.......A...G.............. CTCTTCCACGTCGCACTCAGCCGGATGCGGGCCGGC 8626500 36 91.9 38 ..........-..C............G.......... TTCGGGAACCAAGGTGATCCGCCCTGGCAGGGGCGGTG 8626574 37 94.6 36 ...............T....T................ TTCGCGTTCGAGGCCATCTGCTCGTTGAGGCGGTAC 8626647 37 89.2 34 ...A......C....................T....T GCTTCCGGCACGGTGGGGGCGACGGCCAGCTGCC 8626718 37 81.1 36 .G......T.C.T......G....T.G.......... ACCGAGTACTTCACGAACACCGGCAGCGGGTCCGAT 8626791 37 86.5 34 ..........C.....C..G....A........G... GTAAGGTTGTGTGTGGTCCTGGCACCGGCTGCAG 8626862 37 89.2 36 ...T......C...............C....G..... TTCGCCTGCGCCGGGACGGCGGCCGCAGGCCGGGCC 8626935 37 86.5 37 ..........C.T..T...G........A........ GCCGGGGTCGGCGGGTCCAGCAAGGGCGCCACCGCAG T [8626947] 8627010 37 94.6 38 ..............G....G................. ATCGACTGCATCGAGGACAAGACGGCGCTGTCCGCCTG 8627085 37 89.2 36 ..............G...AGG................ ACCTGGACGAAGTTTCCGTCAGCAAGTCCGTCCTGA 8627158 36 91.9 0 ..........CG.......-................. | ========== ====== ====== ====== ===================================== ======================================= ================== 43 37 91.5 36 GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Left flank : ACCCAACACCTCCGCCGCCAGAAGCGCACCCGCACCCTTGTGCGGAACCCCTACCCTGCCCCCAAGACGCTCAGCCCGCTCCAGAGCAACCTGCCACGCACAACTCCCCTTCCCCACGTCATGCACGAGGGCGAGGTACTCCGCGGAAGGCCCCATCCCGAAGGCACCTCCGAAGACACACGCCAGCGAAGCAGATCCCCGTAAGTGATCCTGCACCGTGTGCCGTAAGCCGCTGACGTCGCTACGACTGTGGGCCCACAGCGGCTCGCCAGGGTCTTCGCTGTCTCCGGGTTCCACCGATAGGCTCGACATGGTCAGGCAGCCTATGAGGCAGCACTGACAATCCGGTTCACGTGCATGAGAAGGGTGCTTCGGAACCCCAAGTGCACACGAGACACGCGACTTGCTCCGAGGTAAGACCAACCGGTTCGGCCCCATTTGGTCCTCGGCGTCGGACCTTTGATCGACCTAGGTACTCTGAATCATGCAGTTCAGCCGCC # Right flank : CTGACCGAGAGGGGGCCAGATGCCTCAGCCCCCCCGTTACCTTCTTCCTGGCTCCGCAATGGGGCTACCGGCCTTCGGGTCCGGCATGACTTCCCCCCCCTTGTTGCGGTTGATGATCCGGGGGGTGGTGTCACCGGGCCCGGAGGCATCGACGGACCGCTGATGAGGGGCTTGAGCACCGGCTTACCCGAGCCGGAGGAACTCTCCGTAACGTGGGTGTGGCAGCTCGGTGCCGAGGCAAGGCCGGACGAAAGCGTGAGCGGAGGGGCTCGCACGTGATCGACACCAGCGACATCGACGTCTTCCTCGGCCTGGATGTCGGCAAGGGCGAACACCACGCCACCGCCGTCACCCCGGCAGGCAAGAAGGCCTTCGACAAGCGCCTGCCCAACACCGAACCCAAGCTCCGCGAGCTCTTCGCCAAGCTGCAGGCCAAGCACGGGACGGTGCTGGTCGTGGTCGATCAGCCCGCCTCGATCGGTGCTCTGCCGCTGGCGGTC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.90,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [22-74] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 8629217-8630712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8629217 37 100.0 35 ..................................... GACTGGCCGAACGCACAGCGGGCGGCCCGGACCGG 8629289 37 89.2 35 ........T..........GT........T....... CTCGGGGTGGGCGGAGATCGCTCCGCGGAGCCGGA 8629361 36 83.8 36 A.......T...A....A.-T................ CTCGGCACGGACAAGCGCCTGTACTGGACGCACGAC 8629433 37 94.6 38 ..........T..G....................... GAGTCGATGGGGTTGCCCCGGTACGTCGTCAGCAAGGG 8629508 36 94.6 38 .......C................-............ AACCGTCACCCGCGGCTGACGGTCCCCCTTGTCGGGTC 8629582 37 94.6 36 ....T.....T.......................... GACGGACCTAGGGACACCCGAGCCTGTGGAGCTGAC 8629655 37 100.0 35 ..................................... CTGACAACGGCGCCAACCTTGCCGGGGCCGTCCGG 8629727 37 94.6 35 ........T...........T................ CCCACAGTGGGAAGCGACAGGCGCCGGGGAAGCTG 8629799 37 94.6 34 ....T...............T................ ACCAAGTGGGAGGACGAGGAGACTACCAACACGA 8629870 37 97.3 35 ...................G................. GTCGGGTGCTGTACCCGCCCGATCGAGCGCACCGG 8629942 37 83.8 36 ..T.....T...T....A.GT................ CGCACGGACCGGCTTGAGAATGACTCCGGCCAGCTC 8630015 37 97.3 36 ...............T..................... GAGGGTGTCCTCTTCGATCGGGACCCGCGCGCGGGC 8630088 37 91.9 36 ..........T....T.............T....... TTCACCGGGTACTCGATCGTCTCACCGGAACCCGTG 8630161 37 94.6 36 .C.................G................. TCCTCCACCCACGCGCGGCCGACGAGTGCGTGCGTC 8630234 37 94.6 35 ........T...........T................ TATGTGCAGTACGACACGCGGACCCTGCCAGGGGT 8630306 37 89.2 36 .C......G.....C....G................. GAGGCGGACACGTTCAGCAAGCGTGGCGTTCCGCTG 8630379 37 83.8 38 .......C........A..G...TT........T... GACTTGGCCGTCGCGCGCTTGTGGGCGGACTCGTCGGC 8630454 37 86.5 36 .............CG....G..T...T.......... GACTGGCCGAACGTACAGCGGGCGGCCCCGTGGCGG 8630527 37 78.4 37 A.......TA......AA.GT...T............ GGCCGGCCCCACGAGTCGGCCATCATCTGGGCCGATT 8630601 37 89.2 38 ............A...A..GT................ TCCGCCTCGGAAAGGGCGGTCACGACGGTGCCGAGGTC 8630676 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 92.0 36 GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Left flank : GCCAGTGACCCAGCGACAAGGTAGTAGTGATCCGGGAAGTACTCGATGTGCTGGTGCCCGCCGTCGTCCATCTCCGCAATCGACTGAACTTCGTCAGCAAGAGCCGTCAAGCCCAGCCGGTCACCCTCGATGAGTAGAGCGCTGCGCTCCGAGTCAACTCGGATACGGACACCCGGGCCGCTGGTGCTCACCACCTCGACTGAAGCCAGTTCAGTGCCCCCGAAGCTCGGTTCAGCCGAGGCGGTGGTTTCCGTGCCACCCTTCCCCGCGGCGAGGGCGAAGGCCAGGACGGCGAGTTCCGCCGCACCGCCCGAGACGTCCACCCCATCCTCATCGGGAAAGAACAGAACCCTCATCCGCCACAACCCCTTCGGTTCCACAACGCCAGACTCAACGACCAGAGCCGTTGCCCCTGGTCAACCGGGCTTCCCCGGCTCAAGGCCAGCCGTCACGGACATTACCCACCGCTTGACGAAACCCATAGGGGCACCCCCCCCCGC # Right flank : CCACCAGTTCACCCGGGGTCTGACAGTGAGGATGTCCTTGGCGTCGTTCGGGGGTCTGACTCTGGGTCTGACTGACGTTTCGGCTGTCCGTCTGTTGAATTGTCGGCCGCCGAACGACGCCACCGCGTGTGCTCGCGGGTGTCCGTGACCTCGTAGGAGCTTGGCCACCAGCCTCATCACTGTCTTGTCCGTCAGCCTGGGCAGCACACGCTGCTCCGGTACCCATACGGAAGGACGGCAGAGCCGAGCATGACAGCGCCCGAGATAGCGGTGATCGGCGGAATCGACACCCATACGGACGTCCACCAGGCCGCAGTGATCGACTCGATTGGCCGCCACCTGGACACGCAGCCGTTCGAGACGAACTCGGCCGGCTACGAGCAGCTGCTGGCCTGGCTGCGTGCCCAGGGCGACGTCATCGCGGTCGGGATGGAGGGCACAGGGGGCCTACGGCGCCGAACTCGCCCGGTTCCTCACCGCCAGCGGCATCACGGTCGTCG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [20-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 8631721-8633114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024985.1 Streptomyces lavendulae subsp. lavendulae strain CCM 3239 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================================================================================================================== ================== 8631721 37 83.8 36 ...........TGT.....AC.G.............. TGCGGTTCTCCACAGACGACGGGGTAGACCTCGCAC 8631794 37 86.5 211 ..........T..T......C.G......G....... CATGCAGCCTACGCCGGGTAGCGGCCACCCCCCACCCGGAGGCAGCACTGACAATCCGGTTCACGTGCATGAGAGTGGTGCTTCGGAACCCCAAGTGCACACGAAACACGCTACCCACTCCGAAGCAAGAACAGCCAGTTCGGCACTATTTGGGCCTCGCTGTCGGCCCTTTGCACGGCCTAGGTACGCTGAATCATGCACCTCAGCTACC 8632042 37 100.0 38 ..................................... GGCCTCGTCGTTCGTGGTGTTCGCGGCCCTCGCCGCGG 8632117 37 100.0 36 ..................................... TGCCTCCGCTTCTGGTGACGGTGCTGGGAGCGCAGC 8632190 37 100.0 38 ..................................... ACCAGGCTCAGGGCCTGCTGTGCCTGGCGACGGCGCGA 8632265 37 97.3 36 ...............................T..... CTCTTCAAGTGGAAGAAGCTGATCGTCCCCGCCTTC 8632338 37 91.9 37 .............T.....AC................ TCCCTGGTGGCGGCGGTGACGTCGACTCCCTTGCCGA 8632412 37 86.5 38 .............T.G..AAC................ CTCGATGACGTGCTTTTCGAGGGCCCGGCGGACGTCGG 8632487 37 89.2 36 ..........T..T.....AC................ CAGAGGAGACCGGCGACGAGCAGAACCAGGACGACC 8632560 37 89.2 37 ..........T..T.....AC................ ACCAAGAGCCCCGACCACGCCGCGCGACGGGCTGAAG 8632634 37 91.9 35 ...........T.T......C................ CGCGAGCGGCTGTGGCAATCCGCGGGTGGTCGGTG 8632706 36 81.1 95 .......CT....T.-...AC..G............. TTGAAGGCGACGATGGCGTAGATGTCGACGGTGAGGTGACCGTTGCCTTTCAGGGCGAACGCCGGTTTCCCGATCGGACGGAGCATGCTGGACGG 8632837 37 89.2 38 .....C.......T.....AC................ GACGTGGACCTAGGGACACCCGAGCCTGTGGAGCTGAC 8632912 37 83.8 37 .............T.....AC.G.......C.....A TCGACTGCATCGAGGACAAGACGGCGCTGTCCGCCTG 8632986 36 89.2 56 ..........G...-.....T....C........... CGGCAGGCCCTGACGGCGAGCTACCGCACGGCGTATGGCGCTCGTAGCCTCTCCAC 8633078 37 67.6 0 ....T..C..T.TT.....AC......C....C.CCA | ========== ====== ====== ====== ===================================== =================================================================================================================================================================================================================== ================== 16 37 89.2 54 GTGGCGGTCGCCCCTCGGGGGGACCGAGGATCGCAAC # Left flank : GCCCGGACCGAAAGGCCAGGCGGGCCCGCGGCAAGTCCGATCCGATCGACGCCTACGCGGCGGCCACCGCCGTCCTGTCCGGTCGCGCGAGCGGAACACCCAAGAGCCGGAACGGGATCGTGGAAGCGATCCGCGCTCTGCGTGTGGTCCGCAAGAGCGCCGTCAAGGCACGGACGCAGACCATCAACCAGATCCGCTCTCTGATGGTCACCGCTCCCTCCGCCCTGCGGGACAAGCTTCGGGGACTGCCCACCGGCCTGCTGATCGACACCCTCGCCCGCACCCGGCCCACCGGTGATCTCACGGACCCGGCCTGCGCGACCAAGACGGCACTTCGCTGCCTCGCCCGGCGCTACCAGGTCCTGCAGCAGGAGATCAAAGAGGCCGACGCGGACCTCGCTCCCCTCGTGAGACGAGCCGCTCCCAGCCTCGTCGCCCTGCCCGGAGTCGGGACCGAGACAGCCGGCCAGCTGCAGCGCGGTGTGCACCGCGAAGGCGAC # Right flank : AATGCCAGGAGTGTCGATGGCCGGTAGTACGACTTCGAGTGGTGATCCTTTCTTGGGGATGGCCCGGCCTTCTTGGGGTTCACTGTGCCCGCGAACCATGTTGTAGGTCCCGAAGCAGACAGTCCACTGCACGTTTCCTCTTCTGCCCGTTTCTGCCCGCGGGCGTAGAGCAGAGCCACCACTTCGGCGTCGACCAGGGCAGGCCGCACCGGGACGAGAAAACGGCTCGGTTTGTCGGCCAGCACGCTTACGAAGGAATCGGTGTCGTTGAGGCGTACTCAGGGCCAGCACGACAAGTGCGGCGTTCGTAGCCCCATCCAGTGAGTCGCCCCAGGAGTGGGAGGTGCCATTGCACGAGTTTTTTGCCGTACACGCCCATCACTCTCTGGACGGCATCCCCGGACTTTCATCCGACTCCAGCGCATATTCCAGCCAATGTCGGACATGGTGGCTTTGTAGGCGAGTTCCGAGAACGTCTGTTGCTCAGCGCTGGGATCGCC # Questionable array : NO Score: 3.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-1.61, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCTCGGGGGGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //