Array 1 244958-246572 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDL01000003.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2664 NODE_3_length_371083_cov_5.24443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 244958 29 100.0 32 ............................. CTGTCACGTGAGCGTGAGCGCAGAAACGCACT 245019 29 100.0 32 ............................. CGTGGAAGGCGCAGATTCGTGGCGGTGCAGCT 245080 29 100.0 32 ............................. AATACAGACGCGGCAGTATTTGTGGAGGCGGC 245141 29 100.0 32 ............................. AAATCCAACCCGACGGCACGGGGTTGTCAGTT 245202 29 100.0 32 ............................. GGTACGCTCAAACAAATTTTTGTTGGTCTCGC 245263 29 96.6 32 ............................A GTTCCTCGCCGGGTGCCAGCCTGTCGTAGATC 245324 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 245385 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 245446 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 245507 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 245568 29 100.0 32 ............................. AATTACGTACGTTTGAGGGGTTGGGGATTCCG 245629 29 100.0 32 ............................. CCCCACGCAATGGCGCTAGCACTGGTTACGGG 245690 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 245751 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 245812 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 245873 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 245934 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 245995 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 246056 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 246117 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 246178 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 246239 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 246300 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 246361 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 246423 29 100.0 32 ............................. ATGTTTAATTTTGTAGCCCGCTACCTATCGCC 246484 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 246545 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAACCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 262843-264765 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDL01000003.1 Salmonella enterica subsp. enterica serovar Concord strain BCW_2664 NODE_3_length_371083_cov_5.24443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 262843 29 100.0 32 ............................. CGCAGGACATCGGCGAGGATTGGCCAGGCCAT 262904 29 100.0 32 ............................. CGAAATCAGGCGTTTTTGGGTTTTCCTCAGTA 262965 29 100.0 32 ............................. GCTTTATGCTGCAAACTCTCCATCTCGGGAAG 263026 29 100.0 32 ............................. CGTAATTGGTAGTTCATCCGCTCATTTCATAT 263087 29 100.0 33 ............................. GCGTGCCTCATACATTCCATCACCTCCATCGCC 263149 29 100.0 32 ............................. AGCTATCGCGAAACGGTTTCGTAAGCCGTGAT 263210 29 100.0 32 ............................. CACGGAGTTAAACGCCGCTGCAGCGCTGTTTA 263271 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 263332 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 263393 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 263454 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 263515 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 263576 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 263637 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 263698 29 100.0 32 ............................. CCCCTGGATTCACAGTAAAGCCGCGCCTTATA 263759 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 263820 29 100.0 32 ............................. ATTACTGATTTGTTCATTTTAATTCCCTTTGT 263881 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 263942 29 100.0 32 ............................. TTAGGGCATTCGGTCATAACGGATACGCCGCC 264003 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 264064 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 264125 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 264187 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 264248 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 264309 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 264370 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 264431 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 264492 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 264553 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 264614 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 264675 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 264736 29 100.0 0 ............................. | A [264763] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCATCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //