Array 1 321420-322668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJC010000004.1 Escherichia coli strain 21-MO00798 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 321420 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 321481 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 321542 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 321603 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 321664 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 321725 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 321786 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 321847 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 321908 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 321969 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 322030 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 322091 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 322152 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 322213 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 322274 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 322335 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 322396 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 322457 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 322518 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 322579 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 322640 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 348368-349371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJAJC010000004.1 Escherichia coli strain 21-MO00798 contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 348368 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 348429 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 348490 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 348551 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 348612 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 348673 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 348734 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 348795 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 348856 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 348917 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 348978 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 349039 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 349099 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 349160 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 349221 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 349282 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 349343 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //