Array 1 218343-217764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVY01000024.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N32053 N32053_contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218342 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 218281 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 218220 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 218159 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 218098 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 218037 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 217976 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 217915 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 217854 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 217793 29 96.6 0 ............T................ | A [217766] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVY01000056.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N32053 N32053_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 113 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 174 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 235 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 296 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 357 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 418 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGAGGTTGACCATCGTCAGCTTCATAAAGATTTAG # Right flank : CGCCGTGTTTACTTCAATAGCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 471-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVY01000092.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N32053 N32053_contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 470 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 409 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 348 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 287 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 226 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 165 29 100.0 34 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTCGCA 102 29 100.0 34 ............................. CGTATTCGGTTTATCGTTAATTTTTCCGGCAAGT 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCGTCACTACC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //