Array 1 78403-81358 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQH01000034.1 Dickeya dianthicola strain MIE34 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 78403 28 100.0 33 ............................ TGGCTTTGTTGCGTGCCTCGATAACTTTCGCCA 78464 28 100.0 33 ............................ TCGTCATTGAGCCGAAGGAAGATATCAAAGAGC 78525 28 100.0 33 ............................ TAAACCAGTCGCTTCAGCGCAACGCAGCGGCAG 78586 28 100.0 33 ............................ CCTGTTTGTTGACTCAGTCCGTCAACCCATCAC 78647 28 100.0 33 ............................ TAAAGTAAAGTTTCATTTAGTACCCCTAGTTAG 78708 28 100.0 32 ............................ CGAAGCGCGCGTCGTTTAACCCCCTATAACCA 78768 28 100.0 33 ............................ TTTAACTAAATTCCTTTGTAGATTATACAGTTA 78829 28 100.0 33 ............................ CTCGTAAAGCTGCACGGCAGACGTGAGTCAACG 78890 28 100.0 33 ............................ CTAAGTACAGTACACGACAAGCAAGACGGGCAG 78951 28 100.0 33 ............................ TATGGCTTAACGGTTGGGTAGTCGAATCTCCGG 79012 28 100.0 33 ............................ CGACTCAGAGCACCGTAAGGTGATAGCCCAGAG 79073 28 100.0 33 ............................ CGCTGCCTGGTAGATGCGTGGGATGATGCGCCG 79134 28 100.0 33 ............................ CTCAGATGTGTCTGTTATCCCGTGTCTACGCAG 79195 28 100.0 33 ............................ TGAGAGTCGGATCGAGGAGGCTCGAACGACTCA 79256 28 100.0 33 ............................ CGAAGTGAGAGAGGACTGAGAGAGCGTACCCAC 79317 28 100.0 33 ............................ TGAGATATACGGCTGTCAAATTCCATGATTACC 79378 28 100.0 33 ............................ TGCTTCTTCGAAGCCGACACGCAGATCATCGCG 79439 28 100.0 33 ............................ TCCGTCCCGAACACAAAAAGCTCTGGTGCAAGT 79500 28 100.0 33 ............................ TCATTGTCGCGAGCAGCGCCCGCTTGCTGAGTT 79561 28 100.0 33 ............................ TACATAGACATCCCGTGGGGTGCCACTGTGTTT 79622 28 100.0 33 ............................ TATGGGCTTCCTGCCGGGCTGCTTAAAAGTGTC 79683 28 100.0 33 ............................ ATGCCATGTGACATTTTCAATCGCGCTGGGTGA 79744 28 100.0 33 ............................ TCAGTGACAATTAACGCATTGTCGAGATATGGG 79805 28 100.0 33 ............................ TCGGATGGTTGCGATCCTTTCTGTAAATCCGGC 79866 28 100.0 33 ............................ CTGATTAAGGTATTTTGCAGCCGCCTGCGCAGA 79927 28 100.0 33 ............................ CAAGATGGCTGTAAAGTTGTCGAATACGTCAAG 79988 28 100.0 33 ............................ TAACTGATCATCTGTTGTGCGAGACAGCTCGTT 80049 28 100.0 33 ............................ TTCTTCGTTAGTTGCCTGTCCATCTGTGTGTCG 80110 28 100.0 33 ............................ TATACGGAGTCGAGTAAAGCCTGTTGTGCCTGA 80171 28 100.0 33 ............................ TCTGACTCTCATTCTTCGTGTCATCATTCGACT 80232 28 100.0 33 ............................ TGGGAAGTGGTACGTAGGTTACAGCACAGACCT 80293 28 100.0 33 ............................ CAAACAGGCTGTCCCAGGTCTCTTTAGTAGGGC 80354 28 100.0 33 ............................ CGACGCTAACCTGCTTAAGTAGCTAGCCAGTTA 80415 28 100.0 33 ............................ TTGAGTTAAGTACGAACAACGTGAGTACTAACG 80476 28 100.0 34 ............................ AGTCTGATTCGGCAGGCCACACCGATCAGGGTAA 80538 28 100.0 33 ............................ TTATCAATAGCTTCTTGTGCTGACAGCACGTCT 80599 28 100.0 33 ............................ TACGACAACCGAAAAATGGTCGTCAGCGAATGG 80660 28 100.0 33 ............................ TCAGGAGTTACCCATGCAGTATTCATATGCTGG 80721 28 100.0 33 ............................ TCGCCAGAGCATGCACGCTAAACCAACGCCATG 80782 28 100.0 33 ............................ CACAGCGGCCAGCAGCCGCAGGCGCTGGAAGAA 80843 28 100.0 33 ............................ CACAGTATGATCGCCCGCGATTGGCGAATAGAA 80904 28 100.0 33 ............................ TGGGTGACAGGAAGTGAAAATATGCATCACGCC 80965 28 100.0 33 ............................ TTATAAGACCTGTAAGTGCTGCAAAACGAAATT 81026 28 100.0 33 ............................ GCGACGGCACCGCGTTGTTCAACAACTGCGATC 81087 28 100.0 33 ............................ TCTGTTCACCAAGTACCAGGATAACTTCGGCAT 81148 28 100.0 33 ............................ TCAGGATAATGCAGAGCTTGAAAAGCCGCTATT 81209 28 100.0 33 ............................ TTTCTCGTCGGCGCTCATTTTTCCATTCAATCG 81270 28 100.0 33 ............................ CGTAAACCTGCTGCGCGTTTTACTTCGCTTTCA 81331 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 49 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACCGCTGTGTATTGACCTGGCATTTTCCCTCTCACGGGAAATGGCCGGTCGATATGATAAACACAAAGTATCTGACGCCTTCAGGAAGCGAGTTATTGCTATTGATTTGCTTAATCAAATCACCGCTGATGTTAATGAGCTGATGGGGGTTAAACATGATCGTCGTACTCGCAAATGACCTACCACCTGCGGTTCGTGGGCGCATGAAACTCTGGTTCGTGGAGCCTCGCCCGAATGTGTTTGTCTCTGGTGTGAAAGATTCCGTTGCACAAACCGTGGTTGATTACTTGATGCAGTATTCACCAGCAGAGTCTGGTCTTATGCTGTTTAGAAGTATTCCCCAACCGCCAGGTTACGAAATTCGTTACAAAGGTGAGGTGAGAAAGCCAATTACGAATATCAGCGGATTACAACTCATTATCGAGACCCTGAAATCCCTATAATCCACAGATATAGTGTTTTAATTATCGCTCTTTCACAATATATTGGT # Right flank : CGATGTCAACAACGGGTAAAAAGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59313-58025 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQH01000046.1 Dickeya dianthicola strain MIE34 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 59312 32 100.0 35 ................................ CGCAGTATGTATAGGTAGGTGCGTCATACAGGGTA 59245 32 100.0 35 ................................ CTGAGGAGCACGTATGGTACAGTCGAAGTTCGAAC 59178 32 100.0 35 ................................ GATAAGAGGTCCGAGGGGTATCAATTCGACGGCAA 59111 32 100.0 34 ................................ CTAAGCGAATCGTCCAAGAGGAGCAGGTGCAAGC 59045 32 100.0 34 ................................ TCAGGAGCTGTGTGACCAGCTTCAATCCCCTATC 58979 32 100.0 34 ................................ GCGGTGGAACAGACTCGGAAAGCGTTGAAGATTT 58913 32 100.0 34 ................................ CGCCATCGATGCTGCCATCCATGCCGCCGCGCAC 58847 32 100.0 35 ................................ GAGTAGTACCGCTCTTTAACAATCTGGTTAGTGTG 58780 32 100.0 33 ................................ TCTCTCTCATAGTGACAGTCTAAATGAAACTCT 58715 32 100.0 33 ................................ AAGCTAATCGCTGTTAAAGCTATCCCTGCACAG 58650 32 100.0 36 ................................ AGTGAAACTGTAATCATGTTATCCACTCCTTAATCC 58582 32 100.0 33 ................................ TCTCTCTCATAGTGACAGTCTATTGATATTTTA 58517 32 100.0 35 ................................ CAAGGGGATTATGATGTGTTTTGAGTACCATGAGG 58450 32 100.0 35 ................................ AAGAACAGCCTACCCATGCCTACAGCCTACCCAAC 58383 32 100.0 33 ................................ AGTAGTTTGCCAGGGTAAGGAAATCACCGCTCT 58318 32 100.0 34 ................................ TGGATAACCCCAAAGGCGTTGTTGATCAAATCGC 58252 32 100.0 34 ................................ ATCAAACGTAGCATTCACTACCGGGATGAAGAAA 58186 32 100.0 34 ................................ TTTGAGTAGCGCCAGCGTTTCATCACGTACCGCC 58120 32 100.0 33 ................................ CAGTACGAACCGTACATCTTGTCAACTAGCCAC 58055 31 81.2 0 .....................AC-....C.TT | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.1 34 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AACAGACAACCGGAGCAGCCCCTGTATGATGGTACTCATCACTTACGATGTATCGCTGGAAGACGCCAACGGCCCGCGCCGCCTGCGGCAACTGGCGAAAATCTGCCTGGACTATGGTGTTCGGGTGCAATACTCGGTATTCGAATGCGACGTTGATGCTGCACAGTGGGTGGTTTTACGTCAGAAGCTGCTTACCACCTACGACGAACGGGTCGACAGCCTGCGATTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAACACCACGGTGCCAAACCGGCGCTGGATATTTTTGGTGATACCCTTATCGTGTAACACTGCGCCAACCCCCGGTGCTCATCATTTTCCCGGCCGGTTGGCGCAGCCTTATACAATTGAATCATAAATGGTTTATTTCTTCCCTCCATCACTGCGCCCCCCAATTCCTTCTCGCAGACATTACGTTGGCGTTATCTCCACGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : GATATCGTTATTCGCCGGTTAATGCTGCGAAGGCGGTTCCGACTCAAACAGCGGCAACGGCTTACCGATGATGTAGCGCTGGCGTAAATGCGCGGATAACACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCACAGTCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCGCCGACGAACCCCAGCACCGCCGCCGACCGCACGTTGGACTCCATCTGGTACAAGCTGAGCGCCAGAAAGGTGGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAAGCTGTTGGCGCCGACCGCGCCAAGCCCGCGGCTGGGTGAGCGTTCTACCGCCTCGTGCCCTTCCGCGTACAGTTTGCCGAGCAGGCCGGTGTCCTGCATCAGGATCGCCAGCGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACAAAAATCAGCCCCCAGATAGCCATGTCGATGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.90,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //