Array 1 449-2002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000011.1 Nocardia farcinica strain BJ06-0153 NODE_11_length_167285_cov_33.510278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 449 29 93.1 32 .......G..............C...... AAGAAATATCGAGTCGCCCTGTACTCGACCAT 510 29 100.0 32 ............................. CGGTTGCGCGCCATGCAGAAGGGCGACGTGGT 571 29 96.6 32 ............................A CCACCTGCGCCTGCTTGACCTCGACGCCGTGG 632 29 100.0 32 ............................. CCCGGACCCGCCGAAGGCCATACCGATACCCG 693 29 96.6 32 ......A...................... GGGACTTTACTGGTTTCGCTTTCGATCCCCGT 754 29 100.0 32 ............................. GAGTTTCGCGGGAAGCAAGCTGTGCTCGTAGT 815 29 100.0 32 ............................. ACGTACGGGCCACCCAGCGGATCCACGCTGAC 876 29 100.0 32 ............................. GGTCGATCGGGGGTGGGTGGGGGTGCTGGTGA 937 29 100.0 32 ............................. GGCAACGGCACCGGCGAGAACTTCACCGGCAT 998 29 100.0 32 ............................. CGCCGCAGCCTCCATACGGCAAGCCGCCCCAG 1059 29 100.0 32 ............................. CCATCGGCAGGGTCGCAGCCCTCGCAGTCAGG 1120 29 100.0 32 ............................. CCCCACCGGTCGGACTCGAGCGCTTCGGGGTG 1181 29 100.0 32 ............................. CCGAGCGCCCGCAGGACAGCGAGGTAAAACGG 1242 29 100.0 32 ............................. GCACACCCCTCCACCTCGAGGTCCGGGTGCAG 1303 29 100.0 32 ............................. GAATCGGCACGGTCGGGGTGGTCGAAGGTCAG 1364 29 100.0 32 ............................. CAGATCGAGGTCGGGTCGATGGGCAGCGCCGC 1425 29 100.0 32 ............................. GACCGGATGGCCTTGAACGCCGCGTCCTCGCA 1486 29 96.6 32 ............................A CAGGGTCTAGGTACAGCTGGCGTACTGCCTCC 1547 29 100.0 32 ............................. TCGCTGGCCGCGTGGTGCCCGCGCTGGTGGGA 1608 29 96.6 32 ..............A.............. ACCTTCCAGCGCCTGGAGAAGGGAGAGCGCAC 1669 29 96.6 32 ........................A.... GAGCAGGTACTCGACGTGCTCGGGCTGCGGGT 1730 29 100.0 32 ............................. AGTGTGGTCGTGCAGCCTGCCGGACCAGCGGG 1791 29 100.0 32 ............................. CGCGTCGTGCTCGGCGGCTACAGCCAGGGCGC 1852 29 100.0 32 ............................. GGGTAGACGCCGTCGGCGTCGAGATCGATGTC 1913 29 100.0 32 ............................. ACCGAACGCATGTGTGCCGCCGCCGTGATCGC 1974 29 86.2 0 ..............T.......GA....G | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 GTCGGCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCTACCACCGGCGGCGGCGCCAGGACCGGCTCGGCCGGTTGACCCCGATCGAGTACGAAGCGATCATGACCCCGGCAGCCCGACACGCTGCCTAACCACTGTCACCTGTTCGTGCACCAGCCCCCCCTGCTCAACGGAATCGGACCAGCCAAAGCCTACGGCTGCGGACTACTCACCCTGGCGCCGCTGCAAAGACAATGACTTCCCGATACCGGAGGCACAGCCTCCACCAGTCCACACGAGCGACAAGCAAGATCATGAGCGTCAATCGTCGACCACCGCCACATCAAACGCGACGAGAACCCGATCACCGCGATCAACCCGATTCGCACAACCAGAACTGGTGGGATGCTGGCCGCCGGTCCCTCTACCGGCCTCCCGCGCCACCCGCAGAGCAAAGTGAATGAAAAACGCGCCCCTCGCGAATATAACAGCAGGTCAGGAAGTG # Right flank : GTGGCAAACCGGCGATCTCGGCCCAGCTTCGGGTCAGGCACGAGCATCACTGACTGAGCGGCCGAAGCAGGGCTGATTCCGCCGCGCAGCGGCCAGCCGACCCCCGACGAGGCATTGAGCTGCCCCGCATCGCCCTCGAAGGCAGCAACCAGACCGAGAGCCGAACGGGCGACAGCGATCCGCTAGCCGCCGCCACTGGCCAGCGTGCTCAACTGCGCCCCTAATTGGCCAGTCCGGGGTTCGCATAGCCGACCTCGTACGCGCGATCGAGGAAAATGGCGACTTTGGAGGACAAGCACGCGATCAGCGCGATCGCCTCGCCTCAGTTGGACTGATGCGGGTGGGCCCGAACACTTCTCAGGCCGCACTTCGCCCGGTATGGGAGAGGCCGATCGCCTCTGCCAACGGCACGGTGGCCGCCATCGGGCACGACCTGGAGCGTATCGACAGCGACCTCCAGGTCATCAGGAGCGATACCCCAGCCTTGCGACGACAGCTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182750-183448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000010.1 Nocardia farcinica strain BJ06-0153 NODE_10_length_187103_cov_34.303162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182750 28 100.0 33 ............................ CGCCGGGATTTGATCGACAGCGAGATCCTCGAC 182811 28 100.0 33 ............................ CTTGCGGATGCTGTGCGCGAAGTCGACGGGGTC 182872 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 182933 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 182994 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 183055 28 100.0 33 ............................ CGACGGCACCGTGCTGGAATTCGGGGAGTACAC 183116 28 100.0 33 ............................ CGCGCACGCGTCGGGTTGGGCGTGACGCGCCCA 183177 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 183238 28 100.0 33 ............................ CGGCGAGCTGGCGATCCGGGAAGCGCGCAGTTT 183299 28 100.0 33 ............................ CACCAGGTTGTAGTCCGGATCGGAATCCGGGCC 183360 28 100.0 33 ............................ CACACGCTCGACACGGCGCACGGCCGCGGCGCG 183421 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGCATCCCTGCCGCTGTCTCAATCCGGTTGTGCACCGGCACCTGAGGAAGCCGGCCCGGCCCTGTGGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185691-186931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000010.1 Nocardia farcinica strain BJ06-0153 NODE_10_length_187103_cov_34.303162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185691 28 100.0 33 ............................ CACCGCGGTCTTGGCCGACGCCATCTACAACGA 185752 28 100.0 33 ............................ CCCGACGTACGCGGGCCTGCGGACGTATCAGGG 185813 28 100.0 33 ............................ CGACCTCGGAGTCTCGACCTCGACGATCAAGCG 185874 28 100.0 33 ............................ CGGCAGCACCAACCCGTTGACCTCCGGCGGGAT 185935 28 100.0 33 ............................ CGATCGCCGCGACGACCCACCATGACGCCCGAC 185996 28 100.0 33 ............................ CAGCGATGTCGAGGCCTACGTGCGGATCTCGTC 186057 28 100.0 33 ............................ CGCCGCGCCCTGCCCGACTTCACCGACGTCGCG 186118 28 100.0 33 ............................ CCCTTGGTTAACAAGGGGATTTGGTACGGGCCG 186179 28 100.0 33 ............................ CGCGTTGATGATCTGGAACGGGCGCACGTTCGA 186240 28 100.0 33 ............................ CTTCAAGAACATCGCCCTGTCCTACAAGGACGT 186301 28 100.0 33 ............................ CCCTGCGAGCGACGACCGAGTCCCGCAGCAGCA 186362 28 100.0 33 ............................ CTCGGCGTACCCGGAGTGCGACCGGTAGGGGGT 186423 28 100.0 33 ............................ CCAACCCCAGGTGCCCGGCACGCGGGTCGACCA 186484 28 100.0 33 ............................ CCCGAACTCGTGGACATGGACGGTCAGCTTCGA 186545 28 100.0 33 ............................ CCGACATCGAATATGGTGATTTACTGCGACCCA 186606 28 100.0 33 ............................ CGGGGAGTGGATCAGCTCCAGCGACTGCGGGAA 186667 28 100.0 33 ............................ GTGCCCAATCGGCGCAGCGCTGGCAGGCGTGGG 186728 28 100.0 33 ............................ GGTGGCCGCCCCTTACCCGGTCACCAAGCAACG 186789 28 96.4 33 ...........A................ CTGGCTGTCGTTGGACTCTGGGTCGGCATCGGT 186850 28 100.0 26 ............................ CGCACGAAGTCGGCCGTGTCGTCGGC Deletion [186904] 186904 27 85.7 0 ........A.T....A.-.......... | A [186912] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.1 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGAAGAGCGCGGCGAGACCTCACGACCGGCGAACTCGGAAGTCTGGCCCGGCGGGTGGGAGTGGTGCCCAACTGATACGCAGGTGGGCTGTGTTTCCACGTTCCGAGAGTGCTATTACATGCAGAAACCGGTGGACAGGGTGTATGCGCCGAACTACAGACCGCCACAGGCTCAAGCGCACTCGACAGAGTGTCTGTCCGGTCGACATCTCCTGCGATTCTGACGGTGTGGGTCTGGGCGAGTCCCTCACTGCGTTAACTGCATGCGTGTCCGAACGGGAGGCCTACGTTCATCTGGAAGGACGTGTTCGGTTGTGTCGTCTGCGTGTGCGCCGCCCACTAACGTTTGTGGCAACTTATCGGGCGGGGCCTGGTCCATCCAGTCGATGGTGCAGCTCCTCAACTGTCGGCAGGTGTAATGGTTCGTGTGCCAGGGCAAGAACCCGAGTGAAAGTGAACGAAAACCGTGGATTTCGGCTGAGGAACTGCAGGTCAGGAAGT # Right flank : GCAAAACGCACTGAACGGCCGGTCCAGCAGCGGTCTGAAGCAGTCGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGTGCCCAAGCCTTATCCCCGCGAGTTCCGTGACGATGTCGTCCGGGTGGCTCGCAACCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 170-2224 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000002.1 Nocardia farcinica strain BJ06-0153 NODE_2_length_994583_cov_34.196284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 170 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 231 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 292 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 353 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 414 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 475 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 536 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 597 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 658 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 719 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 780 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 841 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 902 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 963 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 1024 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 1085 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCAGACGG 1146 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 1207 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 1268 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 1329 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 1390 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 1451 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 1512 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 1573 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 1634 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 1695 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 1756 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 1817 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 1878 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 1939 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 2000 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 2060 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 2121 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 2197 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 34 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGGTG # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCACTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGACATCTCGCTGATTCCGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCATACACGGCAGCGGATCTCGGTCGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11409-14653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000002.1 Nocardia farcinica strain BJ06-0153 NODE_2_length_994583_cov_34.196284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 11409 28 100.0 33 ............................ CCCACCGCAGACAAGGAACTGGTGTCCGACGTC 11470 28 100.0 33 ............................ CTGCCGGTGCGCGAGCGCGTGAAGTCCCTCGGC 11531 28 100.0 33 ............................ CGCCGATCATTCTCGACGCCGGGCAGTGCTGGG 11592 28 100.0 33 ............................ CGCCCAGCTGCCTTCGGGCTTGTAGCCGCCGTT 11653 28 100.0 33 ............................ CCCCTGTGAGCCAGCTAACTTTTCGCGATTACC 11714 28 100.0 33 ............................ CTGCTCCTCGCTCATGCCGGCCGCGATCGCCTT 11775 28 100.0 33 ............................ CTTCAAGGACATCGCCCTGTCCTACAAGGACGT 11836 28 100.0 33 ............................ CATGTGCACTCGCGCCGCCCTGTAAGCGGCCAA 11897 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 11959 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 12020 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 12081 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 12142 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 12203 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 12264 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 12325 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 12386 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 12447 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 12508 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 12569 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 12630 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 12691 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 12752 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 12813 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 12874 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 12935 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 12996 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 13057 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 13118 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 13179 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 13240 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 13300 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 13361 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 13422 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 13483 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 13544 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 13605 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 13666 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 13727 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 13788 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 13849 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 13910 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 13972 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 14033 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 14094 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 14155 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 14217 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 14278 27 96.4 33 .................-.......... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 14338 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 14399 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 14625 28 71.4 0 ...G..TG.....CG.TC..A....... | G [14652] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 51 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 128375-129683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000002.1 Nocardia farcinica strain BJ06-0153 NODE_2_length_994583_cov_34.196284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128375 28 100.0 33 ............................ CGCCTGGACGAGCGTTTCCATCACTACCTGCTG 128436 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128497 28 100.0 33 ............................ CCCGCCACGGCTGACCGCCGAGGAACTGGAGAG 128558 28 100.0 33 ............................ CTGCTCGATTGCGGCGTACCGCAGATGGGCGGT 128619 28 100.0 33 ............................ CAGCGAGCCGATCCTGACCAGGATGTCGCCAGT 128680 28 100.0 33 ............................ CTCTATGCGGACCGGCCAGTGGCGGAGTGGCAG 128741 28 100.0 33 ............................ CTCGCCGCGCTCGAGCAGGCCGGTCATGACGTA 128802 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 128863 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 128924 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 128985 28 100.0 33 ............................ TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 129046 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 129107 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 129168 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 129229 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129290 28 100.0 33 ............................ CACGGTGCGCGAGCAGCACGCCCAGGCAGCGAC 129351 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 129412 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 129473 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 129534 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 129595 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 129656 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTTCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGCGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCGTTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169058-170429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLQU010000009.1 Nocardia farcinica strain BJ06-0153 NODE_9_length_282618_cov_34.800670, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 169058 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 169119 29 100.0 32 ............................. CGCAGTCCATTCCGCGCGATCCCGCGCAGCAA 169180 29 100.0 32 ............................. ACCGCGGGCGCTGCCGGGGATCTCGTCGTCGA 169241 29 100.0 32 ............................. TCAGCCTTGATCTCTTCGCACTGCTCCCTTGC 169302 29 100.0 32 ............................. CGGAAGCGGGTCCGCCACCGCGGGATTCCCGG 169363 29 100.0 32 ............................. GATTGCACGATGCCGTCCCGCCCGATTCCCTC 169424 29 100.0 32 ............................. GCCGCATCGTCCAGGCCCGCGCCGAGGACCTT 169485 29 100.0 32 ............................. GCCTCGCCGAGATCGCCGAGCAGCTGCGCATC 169546 29 100.0 32 ............................. ATCACGCCCGTGCCCTCGGCGGCGGGCAGGAA 169607 29 100.0 32 ............................. TCTCCGGCGCGACGCACCACCGTGGCCACGTC 169668 29 100.0 32 ............................. TGGCCGCGCCAGCACTCGCGGTGGTGGCTGAT 169729 29 100.0 32 ............................. CGGCGACCGAAATCCTCGCTCCGTCCAGCGTT 169790 29 100.0 32 ............................. TTCCGCATTGATAGATTCCAGGAACGCGAACT 169851 29 100.0 33 ............................. CGCCTGCGCAAGCGCGCCGCCGATCTCGTCGGC 169913 29 100.0 32 ............................. ACCGACACCCCGCCGGGCCGAATCCGCACCAG 169974 29 100.0 32 ............................. GCCAGCGCCAGCAGTCCGCCCATCACGCCGCT 170035 29 100.0 32 ............................. CGGGAATCGAGCGGCCGTTGTGGAAGGATCGG 170096 29 100.0 32 ............................. TCACCATCGCCACGCTCACGATGCCGGTGCTG 170157 29 100.0 32 ............................. TCGTGGCTGGCTGCGTAGCGGGCGGTGTGGGT 170218 29 100.0 32 ............................. GCTTCGGCCTCGCAGCTCGCTGCCGCCGAGGA 170279 29 100.0 32 ............................. TGCTCGACCCCGGTGCGCGTGAGGCACCAGAC 170340 29 100.0 32 ............................. CAATGTCAGGTTTTCCAACATTGGACCGCCCA 170401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : ACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCATGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAACACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGATGGGCGGTCCGAGCTGCGGTGGTCGTGGGTCGTCGCCGGACCAGGCACGTAGGGCGGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGAATCTCGCAGGATCGGCGACGTACGATGACGGCGGCCTGCCGGTCTTGCCCCTCAGGGAGGTACATCGGTGAAAAGTGAATGAAAAATGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCGATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCCTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCACGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //