Array 1 31757-30129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046573.1 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================================================================================================================================================================ ================== 31756 23 95.7 38 ............A.......... GCCCCAAGCCGTAGCGCTGCCCGGATCTGATGCGTGGA 31695 23 95.7 38 ............A.......... GCCCGAAGGTGATCACGCCGGAGACGATCGCCGGGGTA 31634 23 95.7 38 .......T............... GCCCCGATTCAACCCATCTTGGATATGCCTGGGAAACT 31573 23 95.7 40 .......T............... GCTCCTGGGACTACGACTCGGGCGAGTACGTCCCGCCACA 31510 23 100.0 38 ....................... CCCCCTACATCCTCACGGCATGTCGCGACCACCAATCA 31449 23 100.0 36 ....................... TCGGTGGGGGTCGATGTGATTAACGAAGACATTCAA 31388 23 82.6 27 ...G....A..A...C....... ACCCCATGTGCCCGTATACGTTCGAGG CA [31376] Deletion [31339] 31336 23 69.6 192 ..C....T.T.CTT.C....... ACCCATACCCGGCCGCCATGTTGCGTGCATCTTCCCGCGCGTGCGGGATAGACCCAACACCTTTGCGGTGTTCGAGGCTGGGGTGGCGCCGTTTCCGCCTACGCTGGCCCTACCCTCGGGGCGATCGCGAACCTACTCCGAAACTGAACCCACACACCATGACCACCCCGTAAACACGGTGGTCAGCAAGTA 31121 23 87.0 37 ..C............C...A... CTCCTCCCCTACCGTCCACGGAGCAGTCAGTGGGATA 31060 23 87.0 37 ..C............C......G CTCCGCGGACCTTCCCGATCCGACCATGATGACGATA 30999 23 87.0 37 ..C............C......G CTCCTGGTCGTGACTCAATGGACTCGGTTCGGACCGA 30938 23 69.6 37 ..C......TGCA.TC....... CTCCGTTCGTTGCTGTCTTACATCAATCGAGTCGAAA 30877 23 69.6 95 ..C..T...TGCA..C....... ACTCTGACTCTCCTGTGTATGAACTGAACCGTTGAAGATTCTCCCTGTACAGGGATACCTCCGGGCCGATCTACTGGTCCGCAGCTAGCGGCGCA 30759 23 69.6 38 ..C.TT....GCA..C....... ACTCGCTCTACGCCCACCCGCACGGGGGGCTTGTCACG C [30743] 30697 23 78.3 38 ..G.....A...A.AC....... CTCCGAATTCGATGTAGACGCCGAGGGATCTGGCGAAA 30635 23 78.3 36 ..C.......GCA..C....... CTCCCCCCGGGTGCGGGCGAGGACGCCAATCATCCA 30575 23 78.3 37 ..C....T...C...A......G CTCCATGCCGGAACTCGATGCGCTTGTATCGTTCATG 30514 22 73.9 45 ..C.....A.G.A.-.......G GTCCTGACAGCGGCCAGGCACTGGTGCAACCACTGCGATCGAATT 30447 22 73.9 95 C....T..-.G.A.C........ ACTCGTATAGGCACGCACACACGTCGGTAGGGAACACCGTCACCGCCGTGCGGAACTAGCCCCGATTGCGTTGCGGATAGGCGCTTCCTGGGCGG 30330 23 82.6 156 .......T.T.C...C....... GCTCGCTCAACAACACAGCCGCGATCCTCGCGGCGCAACTCTCCCCGCGGGGAGATCGCTCCATCATGACCATCACCAGCGACCAAGGCGCGTCGTCTTCACTCCCGGTGCACCGGGAGACACCAGAGAAGACCCCACCGTCTTGCGAGATTGAAT 30151 23 82.6 0 C.........CG....A...... | ========== ====== ====== ====== ======================= ================================================================================================================================================================================================ ================== 21 23 83.5 57 TCTTCCCCGCATGCGTGGGGATA # Left flank : ACGCGCCACCAACGCCGGATTGACCCTCACAGGTACCCCGAGCATCGACTTGCCCTGGACCCTGACCTCCCGCACCAAAACTGACCGCACCACCCAGCACAAAGCCGGAGCGGGATTCACGATCGGCACCCATAGATTCACCGGGTTCGCCATCATCACCAATCCCGATGCCCACCTGGCAGCCCTCACCGAAGGAATCGGGTCCGCCCGCGCCTACGGTTGCGGCCTACTGCTCACCATGCGCCCACCCCGGTAATACCGGCTTCCCTCGAACTCTATTGCGAACCTTGACAACACAACAGCTGACCCATCCCCTTCATTGAGGGGGACCCGCACCACGAGGTGCACCACACAAAAACTTGAACCGCCAGCCAACTTCTCCCCATCCCGGACCGCATCGACTCCACACCGCGGCCGCACTGCCGGAGGCACCCCTGCACTCTGACGAAGACCGAACGAATTAATGACAAACACACCGAAAACGCCCAGCTCAACAAGTA # Right flank : GCCCGAGCTTGCGGATGCGCGCTGATAACGCCATCGAATCGTCCCTCGCACACCGGGGATGCTCCATCGACCAGCCTGCGATCACGGTGCAGACCGAGCATCCCCATCCCCATTGGCGCGGGGATACCCTCATGCGGTGGGGACGGCCTCGAGACGGAGTCATAGAGGCTCGCCGCGCGTTACCAATTCGATCTTCCCTGCGAGATAGTGGGAGGGTTCAATGCCCCGGAGCTAGCATCGTTGACATCATGCTGTGAGCACCGTGAAACTACGCATTGGTAATGACGGTTATTGCAGGGCAGCGGCTGCAAACCGCTGAAATCGTGAGGGGACCGGACTTCACATCCGGTCTCCTTCTCGTCGACATCTCCGACCATGCGGGGAGATGGCACCTACGGAAAACCCGCTGGTTATGTGGGCACCAACATTTTCCCCGCACGCATGTCGGGAATGGTTCCGGCCTGGTCGTGGGATACGTCCAATGCGGCAAACCGTCCCCA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.17, 5:0, 6:0.25, 7:-1.82, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCCCCGCATGCGTGGGGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [48-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //