Array 1 25478-26226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUIU01000003.1 Thermodesulfovibrio thiophilus DSM 17215 G581DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 25478 36 100.0 36 .................................... GGACAAAGCCCCTACTGCTCTTTTCTAATAAATTAT 25550 36 100.0 30 .................................... TAATTCGCTTTCAAACCCATCACTAACCAT 25616 36 100.0 34 .................................... GGTTCTGTTTTGCCTGATACCTGCACTCCATATA 25686 36 100.0 33 .................................... ATACTTATATAAAGACTTTCCCAGTGGGGCAAG 25755 36 100.0 37 .................................... CATACTCACTAGGACACCCACTAATACAAGTGTCAAA 25828 36 100.0 36 .................................... ATTACTGCTCATTCAGAAATCTTTTGAAATCGTCAG 25900 36 94.4 36 ...G....T........................... ATGGAATTGTATAAAAAAGCCTTTTTACATGATTAG 25972 36 100.0 39 .................................... TTTTTCGTATATTCGCCCCATTTGATCAAAGGCTTTTTG 26047 36 100.0 36 .................................... CAATGGGTTCTTTCAGAAATCTTTTGAATTCGTCAG 26119 36 94.4 36 ...G....T........................... ATGGAATTGTATAAAAAAGCCTTTTTACATGATTAG 26191 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 98.7 35 GTAAGAAACAAGACCTCATCTAAAAGGGATTGCGAC # Left flank : TAAGGATATCCACCTCTTTTAATTTATTAATGCAAACCTATTATAAATAAACTTTTATTGAATAACAAAACCAGATTTCAAACTTACCTGTTTAAAAACTGTTAAATACAAGAAAATTTTTTTGAATTATTAAACTGTTATACATAATGCTCAATTTTTAAGCACTGAACGTTTATGTTCGCCATCATCCGTTAATGTTTTACATCACATTCAGTCTTTGAAGAATAAGATTATTTAAAATTGTCATACCAGAAAATTAAATAAATTTTTATTTGACTTTTTATGTTTCTATGTGATTTAATCCTTCAAAGCGGTTCTTTGACAAGACTGGATTTTAAAAATCATCTAAGCTAAAATATTGATTTTGCTTGTTTTAAGCAGAATAAGAAATCAAGCATCTTCAATACTTTGAGCCATGATCGGTGATAAAAAATTTTAAAAAAATCTGCATAACCCTCCTTGTAACATATTGAAAAATAAAGAAAAAAATGAGGGGGTTA # Right flank : CTGAAATGGTTTTCCATTCCATGTATGCTAGTCATTGACCCAGATGTGGATATAAGAGAGGTGCCGATATTATGAATATTACCGCCAAGCCGAACTCTGCGTTTGCTTCGCAACCTTGCCCTTCGGGTCATATAACAGCGGATAAAAGGGAAATAAAAGATTTCCGCAAATTGCCTTTGGCAACTTCTTTTATCCGTAAAACGTTAGGCAACATTGTTAGGAGGTCATGATATTATGCCAAACCAAAGACAAAATCTTGAACAGCAGGTCCTTGAACCCTTTGAAAAGTGTGCCCATAAGCATGGTTACCCTATATTCAAGGGGCAAGGACGCGACAACCGAATATGTGTTGATGGTAACACCTACTTTCAGTTCGGTGATTTGCGGGTAGATACGCCATATTATCACGTGATAATAGAGGTGGAGACTGCTGGAGGTGTCACAAACTTAGTCAAATATTGGTATTGCCTCGAAAGTCAAAAGCAAATCATATCCAAACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAAACAAGACCTCATCTAAAAGGGATTGCGAC # Alternate repeat : GTAGGAAATAAGACCTCATCTAAAAGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 20121-20607 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384100.1 Thermodesulfovibrio thiophilus DSM 17215 G581DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 20121 29 100.0 36 ............................. AATGTATCAAGCCCAGAAGCATTTTTGACAAATATA 20186 29 100.0 36 ............................. GCTATATGGCAACCCATATGCCATTACTGCATCAAA 20251 29 100.0 37 ............................. CCATTGCATTTTTGGGTCTCTGTATCTCTTCAATGTT 20317 29 100.0 36 ............................. GTAGAGAGGCGATGAAGGTATTTGTGAACACAGTGC 20382 29 100.0 37 ............................. GTATTCGCTAGACAATGACAACCCAACAAATTATGAA 20448 29 100.0 36 ............................. TACAGAAGATGAGAAATGAAATATGGAGAATGCTCC 20513 29 100.0 37 ............................. GCAGATGAGGTTACTGATTGTTACCCACAAACCTATG 20579 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 37 CTTTATATCCCACATGGTTCAGATGAAAC # Left flank : ACCTTTCTTTAGATAAATAAGTTCTGTTTTTAATGTTTTAAAAAAACTTTCAGCTACAGCATTATCATAACAATCTCCTTTACCACTCATGCTCTGTTTCATTCCATATGGGAAAATTTTCAATGCAAAATTACATATCCCACATGGTTCAGATGAAACCTATACAAAGTTACTCTCCTCACATGGCTATGTATTACTATTCTTCTAAGAACGGATTGCTAAGTTTAGGATAATCGCTTTCTCCATAACCCTTAGGAAGATGGATATCATCGCCATAGGTTCTCGTATCAGGTGGATTGAGAATTTCGTGCATGCTCTTTATATTTTCTAAATCGTCAGAAGTTTGACGCTGTTTCTGCCAATAAAAATATTTACCATTATAGTAACCTGACCCCCATTCATATTCTCCTGCCAGAGAAAACTCGGGCAAACATAAAATAATAATCGCTGAAATTATCCAGAATAACTTTTTCATAATCTCACCCCCTTTTGTTTAATTC # Right flank : CATATGTAACCCCATTGTAATCAATGTTTTTTACGTACTTTATATCCCTGAACTTGCTACAATTTAGTAGACAAAAAGATAAGGCAACTATAAAAATAAGTAGAAAGGAGAATTACGATGATTAAAAGAAGAGTTTACACAAAAGAATTTAAGATTGAAGCAGTAGAACTTACTTTAGATTCTACAAAGACAGTAAAAGAGATTTCAGAAGATTTAGGGGTTCCTTACCATTTATTATGCAAATGGAGGAGCAAGTACTTACAGGAAGGCACAAATAGTTTTCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACATGGTTCAGATGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //