Array 1 57-1592 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOA01000114.1 Kocuria tytonicola strain DSM 104133 NODE_114_length_6956_cov_8.72661_ID_4598, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 57 28 100.0 76 ............................ CTTGGGGCTGATCGTCCCGACCCGGCAGGCGCGGGGATGAGCCCCACTCGGGCCGCTGCGCCGCGGGGCGGAACAC 161 28 100.0 33 ............................ GTAGCACGACGGGACAGGCTCACGGACGACGAA 222 28 100.0 33 ............................ CGAACGTAGTCCTCTGAGATCCGGATTCCTAGC 283 28 100.0 33 ............................ CAGACCGTGTCCGAGCTCCCGCTGCGGCTGCGT 344 28 100.0 33 ............................ CGTCCACGTGTTCTTCGACGGCTGATATGTGGG 405 28 100.0 33 ............................ GCGCCTGGTGCGGGTGCTGGACACCACCCTGGG 466 28 100.0 33 ............................ CGCCGCCACGAGACCGGGCTCCACCTCCGCCAT 527 28 100.0 33 ............................ GACCTTCGAGGTCGGTATCGACCGCCGGTGGAC 588 28 100.0 33 ............................ GCCGCACCTCGCGTCCCGTGTGCCCCGCGGTGA 649 28 100.0 33 ............................ GCCTTACGGGCTCCAAGCGTGGACGTGGTTGGA 710 28 100.0 33 ............................ CACCTCAGACACCGCGAGCGCGAGGCCCCCGTA 771 28 100.0 33 ............................ CTACCGAAAGTCAACCCGCCGCGCACGCAAGGG 832 28 100.0 33 ............................ CGGTTGTGGGGAACACCGGAGAAACTTGGCGGT 893 28 100.0 33 ............................ GAAGTCCGCGGCGGCCACAGACCCGCCGGACTT 954 28 100.0 33 ............................ CTGGGGCAACGGTGCGTACGGGGCGATCGACCC 1015 28 100.0 33 ............................ CGAGCATCATTTCCTCCGGGGTGGGGTCCACTA 1076 28 100.0 33 ............................ CCTGGGCAAAACCTGGGAGTTGACCGGCTGGTT 1137 28 100.0 33 ............................ CGGGTCCCACATCAGGTGCGGGCAGTAGCCGGC 1198 28 100.0 33 ............................ CCTCGAGCAGCTGATCGGCCACCGGATCAAGAA 1259 28 100.0 33 ............................ CTACTCCCAGCCACAGCCCGCCAGGACCATGCC 1320 28 100.0 33 ............................ CTCCTCGCAGGGCTTCGGCTCGAACCAGGGCGG 1381 28 100.0 33 ............................ CTGCCACTCGTTCTGCGAGCCCCGGTCCACCAG 1442 28 100.0 33 ............................ CCCACCGCGCAAGCCGCGTAACCGAGAGAGACA 1503 28 100.0 33 ............................ CCAGTACCGAGCGCCGTCCCCGAGGGCGGATGC 1564 28 96.4 0 .C.......................... | G [1581] ========== ====== ====== ====== ============================ ============================================================================ ================== 25 28 99.9 35 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CCCCGCGCCTGCGGGGATGAGCCCGTGGCAGGCCGCCGCGAAGGGCTACGTGGATGG # Right flank : CCCGGTCTGCGAGGTACCGCAGCCGCTGGGTCCAATCTTCTGCATACTCACGCAACGACTCGATGAGGTCCTCGATGGCCGCATCCAGGGTCTCTCCCTCCAAGACGAAGGGGCGGTCCTCCAGGACCACCAGGTACGCCCCGTCCTCCACGGACGCGCGCTGGCGTGGTCGCTTTCAGATGGTCTCGGAGGCGGTCTGCGGAGACGATGGCGCTGCAGGCCCGGCCGCGGTTGACGGTGACCACGCCGCCGTGCTCGGCAATGTCGAGCACCGAGCTGGACGAGCTGCGCGCCCGGGACGAGGAGAAGGCAGCGGGAGCTGCGCGTGCCATGCCCCCACCATCATGGCGTACACGACGTCCATCAAGTACAGGATGACCGCTCTCCGCCAATCCAACACGGGTCTCGAGAAAGCAAGTTGTGGACAATCAAAACGCGCACAACTATGATCAAAGGCGGTCACTCGGCGCAGCACCCGTCCCCCCCCCGCGGTGGTGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 586-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOA01000213.1 Kocuria tytonicola strain DSM 104133 NODE_213_length_616_cov_2.82209_ID_4792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 585 28 100.0 33 ............................ GCAGCGCGACGCGGACGTGGCGGTCGCGCACAC 524 28 100.0 33 ............................ CTGGGGGTGGGGGGTTAGGCGGCGTAGGTGGTG 463 28 100.0 34 ............................ CGGCGGCATCTCCACCGTCTACGTGGACACCTCC 401 28 100.0 33 ............................ GCGTGACGCACTTCGTACTCATGGCCGTGATCC 340 28 100.0 33 ............................ CGGGAACAAGGGGGTGTCGTTCGGCCTGAACCA 279 28 100.0 33 ............................ CAGGTGACCGGCACGGGGGTTGCCCTCCACCCC 218 28 100.0 33 ............................ CACACGATCAGTGTGGACGGGTCCGTGCGGCTG 157 28 100.0 33 ............................ CCGTGGGGTCTGCAACCCGGCCCGCATGGTGCC 96 28 100.0 34 ............................ ACAATGACTGAACTCGCTCAGACCACGCAGGGGG 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CGCCTCCGGTCTTGTCCTCGGCACGCATGT # Right flank : CACGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9138-9958 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOA01000088.1 Kocuria tytonicola strain DSM 104133 NODE_88_length_9980_cov_11.9351_ID_4544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9138 28 100.0 33 ............................ CGAACGCGAGCTGTCCCGGCGCCGGCGGGGGGA 9199 28 100.0 33 ............................ CGGCGCACATCCTCAGTAGCCCGCTTCGACGCT 9260 28 100.0 33 ............................ GTGGGCCAACGGCAACAGCGGTGGCTTCCAGTC 9321 28 100.0 33 ............................ CGCCATGGACCGCGAGCGGGCCAAGCCCCTACC 9382 28 100.0 33 ............................ GCACGAGCGCACCGCCTGAGCACCCCGGGCGCG 9443 28 100.0 33 ............................ CGGCATCCGGGTCGCCAACGGCCAGCAGTCCAT 9504 28 100.0 33 ............................ GTCCGTCCCCAACGACCAGTTGCGTGAAGCCCT 9565 28 100.0 33 ............................ CGCCATCCGGTCCCGCACCCGCGCCGAGGTTGA 9626 28 100.0 33 ............................ CGGGCCCGACGGGGGCTTCCCGTCACCGCCACC 9687 28 100.0 33 ............................ CGGGATGGGCGAGCCCCTGGCGATCGCGGTGAA 9748 28 100.0 33 ............................ CCGGAGCGAGTTGTTCGTGGGGAACGCGGTCGG 9809 28 100.0 33 ............................ GCCCCGGATGGCTACGGCCGGTACGGGGTCCTC 9870 28 100.0 33 ............................ CTTCGTTTCCGGGGACTCAGACAGCCACGCTTT 9931 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : TGACGACTCGATGTCGATCTGGGCAGGCCGGAGCGAGACGCGAATGGCTTCGGGCAGGAACTTCGCGGCGGGGGAGGCATGATCGTCCTGGTGCTTTCGGCGTGTCCCGCGGGCCTGCGAGGGGATCTCACCAAGTGGCTGTACGAGGTTTCGGCCGGCGTGTTCGTCGGCAAAGTAAGTGCTCGCATCCGGGAGCACCTGTGGGAACGGGTCTTGGACACCTCAGGTTCAGGGCGTGCCATTCTCGTCTGGAATGCGAAGGGTGAGCAGGGGCTGAAGTTCTGCGTGAAGGATCATCACTGGGATCCGGTGGATCTTGATGGGCTGACCCTGATGAAGCGGCCCTCCCGGAAGAAGCCGACCTCGGCCCCGGGGCTCAAGCCGGGGTGGAGTAAAGCGGGAGCCCGTCGAAGGTTCGGTGGGCGGAAGCCTTGATCGGGAAAGAGCCGAAGTCGAAGGTAACTGCACCGACCGGGCAGAATAACCCCTAGTCACCAAGT # Right flank : TCAGAGCGCTGGCCCCTCCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-2081 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHOA01000175.1 Kocuria tytonicola strain DSM 104133 NODE_175_length_2158_cov_6.83013_ID_4722, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 39 28 100.0 33 ............................ GTGCCCCCCGGACCTTCTCTGCCGAGCCTCCCT 100 28 100.0 34 ............................ ACGGGCGGGTCGGGTAGGGGTCCACGGTGAGCGA 162 28 100.0 33 ............................ CGTCTGGGTGAGGATCTGCACCCCACCCGCCAG 223 28 100.0 33 ............................ TTGCATCCCCGGTGAGCGGCGCGGAGTTCCCCG 284 28 100.0 33 ............................ CCAGTCGTCCACCGCAACGTGCCGTTCGAGGAA 345 28 100.0 33 ............................ GTGCCCCCCGGATCTTCTCTGCTGAGTCTGCCT 406 28 100.0 33 ............................ CTGCATCCGGGGGTCCCCGGAACCGTGCAGGAT 467 28 100.0 33 ............................ CCCGCGCCCGGTGCTGGCGCGCTGAAGATGTTC 528 28 100.0 33 ............................ CTCATGATGCTCCTCCACGGTCATGGTGTAGAC 589 28 100.0 33 ............................ CGGGGGCCTGGACCCGGCGTTCTCGTCGCAGAC 650 28 100.0 33 ............................ GAACCGGATCTTCTTCCCGGTCTCCGCGATCTT 711 28 100.0 33 ............................ CCGTGGGGTCTGCAACCCGGCCCGCATGGTGCC 772 28 100.0 33 ............................ GTTCAAGACCATCCACACCCTGAACCCCTCCCC 833 28 100.0 33 ............................ CCACGGGCCGCGCGCCTTGCGCATGGTGTCTCG 894 28 100.0 33 ............................ CGGGTTCTGGTCCACGAACTCCGCGACCATCCG 955 28 100.0 33 ............................ TTCGGCGAGCCGCCGCCAGGAGCCGTGCCATCG 1016 28 100.0 33 ............................ CGACGAGGGCCAGACGGTCGGCGATGTGTGGTT 1077 28 100.0 33 ............................ GTGCGCCGACGTCGTCGCACCCTTCGCGGGGTT 1138 28 100.0 33 ............................ CGTGGCAGGCCGCCACGAAGGGCTACGTGGATG 1199 28 100.0 33 ............................ CTTGGGGCTGATCGTCCCGACCCGGCAGGTGCG 1260 28 100.0 33 ............................ CCACTCGGGCCGCTGCGCCGCGGGGCGGAACAT 1321 28 100.0 33 ............................ CGCCCGCCTACTTCCCTGAGTTGGCGCGGAATT 1382 28 100.0 33 ............................ CCAGCGTGAGATGCCCGAGTTCTCGAGCCGAGT 1443 28 100.0 33 ............................ CCCCCGGTGATCCCTGTCCCGGCTGATTGCGCC 1504 28 100.0 33 ............................ CTGACCCACGGTCGGAGCCTGTCCCGTGTCCTC 1565 28 100.0 33 ............................ GTGGGTGCGCGAGGAGAACACGCGTACCCTGGA 1626 28 100.0 33 ............................ CTGCTGGGGGGTGCCCGCGTCGATGAGGAACGG 1687 28 100.0 33 ............................ CGGGGTGGGGGTGACGGGCTCGTCCCCGTCAGC 1748 28 100.0 33 ............................ CCACTACACCTCGGAGCCGATGGGCCCGGAGAA 1809 28 100.0 33 ............................ CCGGACCCGTGCGTGGGCGCTGGAGAAAGCGGG 1870 28 100.0 33 ............................ CTCGCTGGGCCGGTAGGCACCGGGACCGATCAG 1931 28 100.0 33 ............................ CGCTCACACCTACACCCATTAGGAGGGGCCATG 1992 28 100.0 34 ............................ GCGCGGGGCGCGCGGGCGCTGGGAGACACGTTCC 2054 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 34 28 100.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : GAGCCCCAGTCGTCCACCGCAACGTGCCGTTCGAGGAAG # Right flank : CGAGGCCCCACCCTCATGCCCCTCCCGGGTGGGGTGCTCCCCGCAGGCGCGGGGAGCACTCCAACCACGTCCACGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //