Array 1 204893-204742 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204892 29 96.6 32 ............................T ACATCGGGGACTGCTTCGGATCGGACGCGTAG 204831 29 100.0 32 ............................. GGGTGAGCCACCACAGGAGGACGGATGCCCGA 204770 29 86.2 0 .....................G..ACT.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 ATCCGCCCCGCCCGCGCGGGGATCGTCCG # Left flank : GGGCAGCCCTCACCGCCCGCGAAAACCAGAACACTGACCTCGACCTCGTCGAATACCCCACCGTCGACACCGCGCCCGAGGACGCCTGGGACCGGGCGGCCGTGCGCGCCGACGCCGAGACCGACCCTGGCCTCGTCCTCGCCTACGCCCGCCACGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCCGAGCCGCTCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGGCATCCCCGGCCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCGCAGCCCGAGCCGGGGCAAGTCGCCTTCCGGACACCGGAATCGACCCAGACAACCCCACGACGACCACACCGCCCGATACCGTTGAACACCCAGCCCCCGCCCAGCCCAGCCCCGGGCCAACAGATCACCGGACCAACGGAGCCCCAGCCGAATGCAGGTAAACGAAAACAGCATGATCACGTGACAACGCCCCAGGTCACGAAGT # Right flank : GCAGCGGCGATCCGGCTCTCGTCCGGAGCCATGCACGAGTCGCCAGACATGATGCGGCCATCACTCTCTGCGGAACCACCGCCGAACGCATCACCCAGGTTGCTCTCGAGGACGACCTCGCGTCTTCCCCGGGCGGGGTTTCACTGAGCGGGAGTGGCTCGGTCCCGGGGTCTGTTCCGGCACCGGCCTGGCGGGCCGGGGCTGCGGAAGTAGCACGTTCGTGTACGGGAGTTGACGGAACGGACCGTACGACTGGGCGCCGGGGGTAGAGTACCGGTGCGCTTCGTGGCGCCTCCCCTCAACGATTCGCGTCCGGGCCCCCGCCCTCGGGGCCGGCCCGAACCCAAAAGAAGGTCACCAGCCGGGAACCACTGGTGACTGTTCTGAGGGGAGGCGCCCATGGGGCGTCGCGGAAAGCCCAAACCGACCTTGCGGCAGCGCATCGAAGACCTACTGGTCCGAGCAGCGCGGAAGCTGGGGAGGTGGCTCAAGGGCTGACC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGATCGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205802-205588 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 205801 29 89.7 32 .C.......................C..A CCTCAGCAGGCATGAGCACGAGGTGTTCATCA 205740 29 100.0 34 ............................. TGGCGCCCCCCGGCGACGGTAAAGACGCTGCGGT 205677 29 89.7 32 C..T.................A....... ATCACCGTGGACGGAGCCCCGTTCCCGTGGCT 205616 29 69.0 0 G..T.................TG.AGCTC | ========== ====== ====== ====== ============================= ================================== ================== 4 29 87.1 33 ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Left flank : GTGCCGAACGTGGATTTCCAGGCCGCCCGAGCAGCATTCACCGCCCGCAGGAACCAGACTGCCGGACCGACCCTGGTCGAGTACCCCACCGTCGACACCGCGCCCGAGGACGTCTGGGACCGGGCGGCCGTACGCGCCGACGCCGAGGCCGACCCGGGCCTCGTCCTCGCCTACGCCCGCCATGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCACCGCCACCCGCATCCTCCACGCCGTCCTCGAAGACCACCGCGCGGGCTTCCCCGGCCGGGCACCGCCCCGCTGAACCGGCAGCGGGCCCGGCCGACTCCACCGCAGCCCGAGCCGGGGCAAGTCGCCTTCCGGACACCGGAATCGACCCAGACAACCCCACGACGACCACACCGCCCGATACCGTTGAACCTCAGCCCAGCCCCGGACCAACGGAACACCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : TGGCTCCAGCGTGCCGGTGACCACATCAGCACGGCTGACCGCAGGACGGCGGCGCCCCGACCAGGCCCACCGGGTCACCGCCAGCACTCCTCCGCCACGACCGCCAGACACAGCAGCACCTCGAACAGCACGGACCCAACCCCGGACAGGCCGAGCGTGAGGCGACCGTGCCGAACCCCGAGTTCCAGGCCGCACGGGCAGCCCTCACCGCCCGCGAAAACCAGAACACTGACCTCGACCTCGTCGAATACCCCACCGTCGACACCGCGCCCGAGGACGCCTGGGACCGGGCGGCCGTGCGCGCCGACGCCGAGACCGACCCTGGCCTCGTCCTCGCCTACGCCCGCCACGCGGGCCACGACCAGGCGGTCGCTCTCTACGGAACCCGAGCCGCTCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGGCATCCCCGGCCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCGCAGCCCGAGC # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Alternate repeat : TCTGCCCCGCCCGCGCGGGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [1,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 211627-211837 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211627 28 92.9 33 ....C........A.............. GTCCTCGCGCCGAAGGCGGGGAAGTGGGACGCC 211688 28 100.0 33 ............................ GAGGGTGCGCAGGCGCTGGGCGGCTGCGCGGAG 211749 28 100.0 33 ............................ AAAGAAGGGCCCCTCATCTCCGCCCCCTCTCGG 211810 28 96.4 0 ......T..................... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GAACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : CCGGTCGACGTCCCCGTTCCGCGTGAGGTACGACGCCGTGTTCTGCGGCGTGGTCCGGGCGTGCAGGGCATGGACGGCCCCGTCCCACGAGTATCTAGCGGCATCGCCGACCCAGGCGAGTACCGTGTCCTCCCCCTCCTCCAGCACGGCCAGGACGGCGGCCCCGGTCGGCTGCCCCGGGTCTGCGACCTGGCGCCCGGCGGCCGTCAGACCCGCGCGGGCGCCGTACAGGGCGCCGTATCGCACGGCGGTCCGCGCGCACAGCAGCCCGACCGTCGGCGCACCGGGCTCGTGCCCGGAGATATCGACAACACACAACCACCCCTCCGGCCGCCGGCCAGAAGACGGAGCGGCTGCCGGCACTGTTCCGTGGGTTGGTGCCCTGACGGCTGACCGCGACGACGATGACGGCCGTGGTGGTCATGGTCTCCCCTGGCGCCGGTGTGACCGCCGACCGTAGCCAGGGAGGTGTATGCACTCGACCCACAGTGTCATCGCGA # Right flank : TACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCTGGGGCTGGGGCTCCGTTGGTCCGCGGCGGGGGCTGGGTGTTCAACGGTATCGGGCGGTGTGGTGTCGTGGGGTTGTCTGGGTCGGTTCTGGTGTCCGGAAGGCGGCTTGCCCCGGCTCGACTCGATCGGGGTGTGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGTGGGGGATGTCTGCCCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGGGTGGCGGTGGTTCCGCAGAGGGCGACGGCCTGGTCGTGCCCGGCGAGCTGCGCGCAGCTGCGGACGAGTGCCGGATCGGCGTGGGCGTCGGCGCGTACGGCCGCCCGGTCCCACAGGTCCTCGGGCGCTTCCTCGACAGTCGGGTGCTCGACAAGATCGAGTCCGGCAGTCTGGCTTTTCGCGGGCGGTGAATGTTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 4 212854-212518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212853 29 86.2 32 .C...................A....C.C CGGTAGTGGCAGAGTTCCGCGCCACCTTCGAC 212792 29 89.7 32 .C...................A....C.. AGGGCGGGAGGGTCGCGGTGCCGCGCGCGCCG 212731 29 89.7 32 ...............A.........C..T GAGGTCGACGTCCTCCGGGAGCTGGGCGCCGT 212670 29 100.0 32 ............................. CCAAGCCTCGTCACCCGCGCCGCCGCGTGGCT 212609 29 86.2 33 ........T.....T...........C.C CGGGGTCGCCATGTCGGTCTGGACCTTCGCCCT 212547 29 72.4 0 G..T.................C..CGCTC | G [212538] ========== ====== ====== ====== ============================= ================================= ================== 6 29 87.4 32 ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Left flank : CCTGACCAGGGCCAGGACACTCACCGCGGCCTGCCCACGGACCGCTTGTTCACCTCACGGACCTTCGCCGACAGCTTCTTCCGCTGCTCGTCGGTCACCCCGATCGCCATCGCGGTCACCGCACAGCCTCACGGCCGGTGGAGGTGAGGGTGAGCAGGGGCTGGCAGACGTAGCCGGGAGCCATCCCCGCCACCGTCCGCCGCGCCTTCCCGCCGTCCGCCGCCGCGCGCCGGTCACCGTCGGCGAGCAGATGCCGCACCAGGCGGTGAAGCTGCTGGACGGGTTCGTCATGAGGTTCGAGCCACTCCCGCTCCTCCTCGTCCCGGACATCATCGACGACACCAGCCTCGACACCCCACAACGACCGCACCACCCGATACCGTTGAACACCCACCCCAGCCCAGCCCCGGGCCAACAGATCACCGGACCAACGGAGCCCCAGCCGAATGCAGGTAAACGAAAACAGCAAGATCACGTGACAACACCCCAGGTCACGAAGT # Right flank : TGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACATCCCCCACCAGGCGGGGTTCCACTGAACCGGCAGCGGACCCGGCCGACTCCACCACACCCCGAT # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGGTCGTTCG # Alternate repeat : CCGCCCCGCCCGCGCGGGGATCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [1,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 216933-216693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================ ================== 216932 27 89.3 60 A....-...............A...... TGGCTGGTGGAGTCCCCGTCGACGACGTGGACCGAGCTACCGCCGCGCCCCACCCAAAAA A,T,G [216924,216928,216930] 216842 28 100.0 33 ............................ CTCCGGGGGCGGAGGGAGATGGAGCGGATCCGG 216781 28 100.0 33 ............................ CTGGAGCAGGCCGCCCGTACCGACGTCGGCGTC 216720 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================ ================== 4 28 97.3 42 GGACGACCCCCGCGCGGGCGGGGCGGAT # Left flank : GGCTCGGGCTGCGGTGGAGTCGGCCGGGTCCGCTGCCGGTTCAGTGGAACCCCGCCTGGCCGGGGATGCCCGCGCGGTGGTCTTCGAGGGCGGCGTGGAGGATGCGAGCGGCTCGGGTTCCGTAGAGAGCGACCGCCTGGTCGTGGCCCGCGTGGCGGGCGTAGGCGAGGACGAGGCCAGGGTCGGTCTCGGCGTCGGCGCGCACGGCCGCCCGGTCCCAGGCGTCCTCGGGCGCGGTGTCGACGGTGGGGTATTCGACGAGGTCGAGGTCAGTGTTCTGGTTTTCGCGGGCGGTGAGGGCTGCCCGTGCGGCCTGGAACTCGGGGTTCGGCACGGTCGCCTCACGCTCGGCCTGTCCGGGGTTGGGTCCGTGCTGTTCGAGGTGCTGCTGTGTCTGGCGGTCGTGGCGGAGGAGTGCTGGCGGTGACCCGGTGGGCCTGGTCGGGGCGCCGCCGTCCTGCGGTCAGCCGTGCTGATGTGGTCACCGGCACGCTGGAGCC # Right flank : ACTTCGTGACCTGGGGTGTTGTCACGTGATCATGCTGTTTTCATTTACCTGCATCCGGCTGGGGCTCCGTCGGTCCGGTGCTCTGTTGGCCCGGGGCTGGGGTGGGGTTCAACGGTATCGGGCGGTGTGGTTGTTGTGGGGTGTCTGGTCGCCTTCCGGTGTCTGGAAGGCGACTTGCCCCGGCTCGGGGTGTGATGGAGTCGGCTGGGTCCGCTGTTGGTCCAGTGGGGCGGTGTCTGGGTGGGGATGCCTGCGTGGTGGTCTTCGAGGATGGCGTCGAGGACATGGTTTGTGGTGGTTCCGTAGAGGGCGACCGCTTGGTCGTGGCCTGCGTGGCGGGCGTAGGCGCGGACGAGTGCCGGGTCGGCCTCGGCATCGGCGCGTACGGTCGCCCGGTCCCACAGGTCCTCGGGCGCTCCTCGGCCATGGGGTTTTCGACGAGGGTGGGTCCGGCAGTCTGGTTCCCGCGGGCGGTGAATGCTGCTCGGGCGGCCTGGAAC # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.59, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 6 221535-221386 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 221534 27 92.6 34 ....A..............A....... TCACGAGAATCGCCGCGATGGTGCCGGCCTGCAG 221473 27 96.3 34 ........................A.. CGGGGCGGCGGTCCTTGTAGGTGACGCCCTTGCC 221412 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================== ================== 3 27 96.3 34 GGACGACCCCCGCGCGGGCGGGGCGGA # Left flank : CCGGCTTCACCGAGATCGGCCGGATGCTGCGTGAGCCATGCGACGGTGAGCGCTTTCGCCGGGGGCATCTGCTGATGCGCGCAGGGAAGTGACTCAGGTTGTCGCGTGCCGCCATCGACGGCACGCGACAACCTGGACCGCCTCAGCCGCGTTGGTTCAGAGCCCTGGTCAGGTCCCGGTTGGCCTCCCTCGCGGCATCGAGATCGGATCGGGCCTCCTCCAACGCGGAGGTCAGTTCGACGCTGCGCTGCTCCAGCCTGCTGATCTTCCGTTGGAGCTCGTCAATGTCCGCTGGAGCACCTCACCCGCGCCGCCTACAGCACCTGGCCACGATCCGGCGCCGCCCCCTGACCCCGGCGGCCCGGCCCCGCCCACACCGCCCTGACGGCCGCGGTCCAAGCCGCGCTGCCCGCCCCGACCCCGGGCGAGACCGCAACCGCGTACGCCACCCGCTACCGCAAGCGCCCCTCCACCTCCTGACCCACCCACACCAACACAAC # Right flank : TCCGTTCCAGCCATTCCGAAATCACCTGGTTGGTTTCTTCTGGCATTTCCTCCTGGATCCAGTGACCGCAGTCCAGGCCGACCACTTCCACGTTGGGCACGAACTCTGCCAGTCTTTCGAATCTCGGGATCGCGAAGTCCTGGTCGCCGTAGATCATGAGGGCGGGCTGCTTGATGATCGGGTCCGCGTCCGCCAGCTGGTGCCAGTTGCGGTCGAGGTTCCTGTACCAGTTGATGCCGCCCGTGAATCCAGACGTCTCGAACGCGGAGACGTAGACGGCCAGGTCGCTGTCGCTCATGATGGGCTCACCGAGTGGTGTTTCCGCCTCGGCGAGGTTGATAAATGCCATGCCCGGCTCAGGGGGTGCGGGGGGCACGTTCTTCCGGTAAAGGTTGCGGAGGAACTGAGAGGTGTTGGCATCAAATGCGGCGTCCGCGACGCCCGGCTGCCGGTTGAAGTGGACGAAGTAGAAGTCGCCGCCGAGGAAGGTTTCCATGACC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGACCCCCGCGCGGGCGGGGCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 7 227879-227668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 227878 28 85.7 33 ..............T.T.......G..T GTCGTGCTCGGGCTCGCTCACCGGGTCTCCTTG 227817 28 100.0 33 ............................ CGAACCCCGGTGTCTCGACGGTTGCCTGGAGCA 227756 28 100.0 33 ............................ ATCCCCAGACAGATCCGCTCGGACTCGCCCAGC 227695 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GAGCGACCCCCGCGCGGGCGGGGCAGAC # Left flank : GGATATCGAGGAGGCGGTCGCTCGGGACGATGAGGCGGCCGGGGTGTTCCGGCGGGGACGGACCCGACCGCGGCGCTCTCGGCACGGCCAGCGGGTCGGCGGGCCAGAACCAGCCCCAGTCCGGGTCCGGGGACCGGCGGCCGACCGTCGGCGGGTTTGTGCCGGTCTTCAACCCGGGCCCGGCCGAGCGCCGTACTCCCCCGCCGGTCGAGGCCGGTGTCGTCGACGACGTCCAGGACGAGGAGGAGCGGGACTGGCTCGAACCCCACGACGACCCCGCCCAGCAGTTCCACCGTCTCGTCCGGCACCTGGCCGCCGACGGTGACCAGCGCGCGGCGGCGGCCGGCCGGAAGGCCCGGCGGACGCTGGCGGAGATGGCCCCCGGCCATGTCCTCCAGCCCCTCCTCACCCCCACCCCCACCTCCACCAGTCGTGGGGGTGCCCGATGACCGCGGCCCGCCCGCCGCCCGCCGTAGCTCTTTGAACGGCACGGGACACGG # Right flank : ACTTCGTGACCTGCGGCGTTGTCAGGTGATCATGCTGTTTTCGTTTACCTGCATTCGCGGCTGGTCCTTGTGTGGTGCGGTCTGGGTAGGTGCACGGTATCTGCCGGAGTGACCGTCGCGGGGGGTGTCTCTATGTCCTTCGTCAAGGATGTGGTGCCGGGTGTATAGGTGTTTGTGGTGGTTATGCGGCGAGGGCGGCGGTGGGGGTTCGGGACTCGTAGAAGGTTCCGTCGCGGAGCATGGCGAACAGGACGCTGACGCGCTGGCGGGCGAGGCGGAGGAGTGCCTGTGTGGTGCTCCTGCTTCTGGTGCGGGCCGGGTGGAGTGGTTTCGTGGTGAGTGTGAGCCGTACGCGGCCTGGAAGGCCCGTACGCCCGTACTGCTGCAGGTCTGCCGGTCGTGTCCTGCGCGGGCGGCGTGCTGCGGGCTCGCGCTGCGGGACCTGGAGGGGATGGACCTGAACCGGGGTGAGGACGACATGGTCCGCGGCGGTCTGCTGG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCGACCCCCGCGCGGGCGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 8 229298-229570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027859.1 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229298 29 96.6 32 ............................G TCGTTTTCGGTTCCTTGCTGGCTTCCCTTGCC 229359 29 96.6 32 ............................A GAAGGGCCTCTTCGCTATCGCCCTGTTGCTGT 229420 29 100.0 32 ............................. CCTCCGGGACTGACAAGGGACCCGGGACCCTC 229481 29 93.1 31 .....................G.....G. GTCCTCTTTGGAGCGGCCTGGCTGGCCGCGT C [229506] 229542 29 89.7 0 ........T.....T......G....... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Left flank : GGACACAGGTGTTCCTTTCACGAGGTAGGGCCTGTGATCGCGCCGCCCGGAGGGTCAGAGTTTCGGGCGGCGCACCTCCATGTTCAGGGGCATCCTGCAGTCCCACACCCACCACCAACACGACCCCCGTACAGGCGAGTTGATGACGGATGGGCAGCACAGGAGCACAGTCAGAAGCACGGACGGTGCGGGTGAGTACGACTGTCCCCGTGGCTCTCGGGGGCAGCAGCCGACCCTGGAGCACGGCGGCCGACGGCCGGGCCGCGGGCGTTCACACCGAGGCGGCGCAGGGACCTGTTCAGAACCCGGTACAGGGCATGCCAGGCCCAGCCAGACATCCGGAGATCCGTGCACGGGCGGCTTCCTTCCGGAACACCCCCCGCACTGGTCATGCCGACGGATACCGTGCACCTACCCAGACTGGACGACACAAAGGCCGGCCCGGAATGCAGGTAAACGAAAACAGCATGATCACCTGACAACACCCCAGGTCACGAAGT # Right flank : CCGGGGTCGCCATGTCGGTCTGGACCTTCGCCCTGTCTGCCCGCGCCCGCGCGGGGCTCCGCTCTGGGTCCAGCGGGTCGGTGACCACATCAAAGCCACCGACCGCGGACGGCGGTGTCCGGATCATCCGCACCGGGAGTCAATGCCGCGGCACTCCTCCGCCACGGCCGCCAGGCGCAGCACCTCAAGGGCCACGGACCCGACCCCGGACAGGCCGAGCGTGAGGCGACGGTGCCGAACCCCGAGTTCCAGGCCGCCCGAGCAACATTCACCGCCCGCGAAAAGCCAGACTGCCGGACTCGATCTTGTCGAGCACCCGACTGTCGAGGAAGCGCCCGAGGACCTGTGGGACCGGGCGGCCGTACGCGCCGACGCCCACGCCGATCCGGCACTCGTCCGCAGCTGCGCGCAGCTCGCCGGGCACGACCAGGCCGTCGCCCTCTGCGGAACCACCGCCACCCGCATCCTCCACGCCGCCCTCGAAGACCACCGGGCAGACA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCGCCCCGCCCGCGCGGGGATCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4547297-4546811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027858.1 Streptomyces clavuligerus strain ATCC 27064 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 4547296 29 100.0 36 ............................. ACCCACGCCGAGTCGGGAGCGTCCTGGCGCAGTGTG 4547231 29 96.6 35 ..................A.......... GAGATGGCCCAGTCGCCTTCTGCGGAGACGTGGAG 4547167 29 100.0 35 ............................. GTGATCCGGGCAGCGGGGTAGCCGAGAGCGCGCGC 4547103 29 100.0 35 ............................. AGGGTGAACGCCATGGGATGGCGTCGCCCGTCAAG 4547039 29 100.0 38 ............................. CGGTGGGTGAGCTGGACGTGGAGGCCGAGGGCCTGGGT 4546972 29 100.0 35 ............................. GACCCCTCCCCCGCCCCTTCCCGGGGCCCTCCCCA 4546908 29 96.6 40 ..........A.................. TCGCCGACGACGGCCAGGGGCTGGCCGAGCCAGTGCGCGC 4546839 29 75.9 0 ..............CC.CA..C..C..C. | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 96.1 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : GAGGAGCTGGCGACGACCGTTTACCACCGCTCCCTCAAGCGGAAGGTGAGCTACGAGGAGCTGATCCACCTGGAGGCCCTGAAGATCGTCCGCCTGTGTCTTGAGGGCCAGCCATACAAGCCGTTCCGGCCGTGGTGGTGAGGGGTTGTGTTCGTGATCCTCATCTATGACACGGCAGTGGAACGCAACCCCAGGGTGCTGAAGACCTGCCGGAAGTATCTGCACTGGACGCAGCGCAGCGTCTTCCAGGGCGAGCTGTCGGCGGCGCAGTACCGGGCGCTGATGGCCGCGCTCAGCGGTGCGATCGATCCGGGGTACGACAGCATCAGGACCTATACCGTGCGGTCTCCGGAGATGGTCGAGACGGATACGCTGGGCGTGGACCTCGGGGGGCCGGGGGACATCATCTGACCTGGGCGGATGCAGTACCGGCGGGTCGCCGCAGAAGCCGCCTCCAGCGAGGCTCGCGGATGGCCTCTGAGCTGCGATTTTACTCTCGG # Right flank : CCCACCTGACAGAACGCCAATTCAGTCAACCTTCCCCCCACCCCAAGTCATTCTTTGCCGCTTCATAGCCTTCGCAAGGTTTTCGCTTGACCCTGTGCGGAAGGCGGGCCGCCCTCGGGCCCGTACAGATGATCCTCGCGGGTCACGCCTGACCCGTGAGGCCGGTGAGCAATGCTCATGGCCGAAGGAGCCTCGGCATGATCCGTTTTTCCAGGACGCTTTCCTCACCTTGGTCCGCCGCAGCGGTCGGCGCGGCCGTTCTGTTCGGTGTGGCGGCGCCCGCGCCCGCGGCCCACGCCGCGCCGCTCGCGTGTGGGCAGACCGTCACGGTCAGCGTCGTGCTCAGCGCGAATCTGCTCAACTGTCCCGGTGACGGTCTGATCGTCGGGGGCAACGGCATCACCATCGATCTCAACGGGCGTACCGTCGACGGCGTCGGGCTTGGGGTCGGTATCCGGAACAACGGGTTCGACAACGTCACGGTCACCAACAGCGGCAGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 4556814-4556391 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027858.1 Streptomyces clavuligerus strain ATCC 27064 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4556813 29 100.0 37 ............................. CAAGGCCGACCCGATCGCGGACGAGCTTGACCGGCTG 4556747 29 100.0 36 ............................. GCGTCGGCCTCATCGAGCCAGCGTCGGGTCTCCGCC 4556682 29 100.0 36 ............................. ATGTGATTGCGTGGGACGGTGACCGTGCCGGTGCGG 4556617 29 89.7 37 ..............C..G...G....... ATGACCATGCGGACGGCGGCGACCATGGCGTCGGGGC 4556551 29 93.1 36 ..T.C........................ AGTGGCTGGTGACCCGCGTGCAGATGGCTGATCTCA 4556486 29 93.1 36 ........T................T... GGCCTGGAGAAGGAAGCAGGGACGGATCGCCTTGCC T [4556475] 4556420 29 93.1 0 .................G..A........ | C [4556406] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.6 36 GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Left flank : ATGCCCAATTTCGATGTGATTTTGAAGCGTATGGGACCCCCTGCGCGCCGATAGGACACTGGGAACAGAAGGGACGAGTAGGGCGCAGGCATAACGACTGCACAACACCCGGTACCGGAGACGCCAAAAGCGCTGCGGGAATCGCACCTGCCTGCGATTATCGGTTCGCTTCACCGAACCTCCACATCGTGCCACGGAGGTGAAGCAACCGGGGCAAGGCGTCTGGAGCCCTATCCTTGTCCCCGGCAAGGTCACGGACCCATGGGCTCCGGGCACCATGGCCACACCATCGGCCCCCGTAGCTCAGTGGATAGAGCAGGCGCCTTCTAAGCGCTTGGCCGCAGGTTCGAGTCCTGCCGGGGGCGCACATCGCCCGATCATGTAGACCTCCCCCCGGAGGGCCGCCCGTGACACTTGGCGGGCACCTCTGGCCTCGGCGGGTGCATTACCGTCGGGTCGCTGCGGGAGTGGCTGGCCGAATGCTCCGCGTACGTCATCCC # Right flank : ATCCGTTCGGCCTGACCGGCGACTGCCCAATTCCCCCCTCCGTCAACGCGGACCCGGGATACAGCGACGGAGAGCATCAGGACCGTCTGCGCCCCGCCCCCTGTCAGGCAGGCCGGTGAGGATGATGCAGATTGCGGTGACCCCAGCGCTCACGTTCAACAGCCACGCATCAGACTTAGCCGCTTTCGCGGCAGCCCGGCCATTCACGTACACCACCAAGAGCCCCGCACCGCAAAAAATATGATTACTTCGTCGGCCAAATTTAGCCAGCGCGCATGCGCCGATGCAGCCCATTGATCTCCCCTACGGTCAGCCCCTCTCGGATGGAGTTGTAGTTCAGCTCTTTCCGAGCAAGACCGTTGGCATACGAGCGCCACGAATAATCGACCCGTTCAGCGCAGGGCCACTGGACAGGTGAGGCCGTCGGCCCTCACAGCCGACGGCCTCGCCCTCAACCCAACAGGGCTGATAACGAAAAACCTAACTGCAACTCCACCATT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //