Array 1 40657-39407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYK010000034.1 Escherichia coli strain 18-47-25 34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40656 29 100.0 32 ............................. AGTAAACTACAGGTCAGCGAGTATTTATCTGG 40595 29 100.0 32 ............................. CTCATCTTCTTCTTGCGTAATTCCCTGAAGTC 40534 29 96.6 32 ............................T GGCGCGCTGGCGCGCGGCGGTAGGTGATAGGG 40473 29 100.0 32 ............................. TTGCGGATGCTCTCGATCATTTCGTTATTATC 40412 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40351 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40289 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 40228 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40167 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40106 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40045 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 39984 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 39923 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 39862 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 39801 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39740 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39679 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39618 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39557 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39496 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39435 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3290-3437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYK010000049.1 Escherichia coli strain 18-47-25 49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3290 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 3350 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 3410 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTGTTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18058-16870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMYK010000015.1 Escherichia coli strain 18-47-25 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18057 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 17996 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 17935 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 17874 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 17813 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 17752 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 17691 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 17630 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 17569 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 17508 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 17447 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 17386 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 17325 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 17264 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 17203 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 17142 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 17081 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 17020 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 16959 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16898 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //