Array 1 90479-89169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFT010000002.1 Escherichia coli strain H2F12R NODE_2_length_201482_cov_87.904432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90478 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 90417 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 90356 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 90295 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 90234 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 90173 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90112 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 90051 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 89990 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 89929 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 89868 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 89807 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89746 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 89685 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89624 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89563 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89502 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 89441 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 89380 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89319 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89258 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89197 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117382-116029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFT010000002.1 Escherichia coli strain H2F12R NODE_2_length_201482_cov_87.904432, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117381 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 117320 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 117259 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 117198 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 117137 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 117076 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 117015 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 116954 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 116893 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [116867] Deletion [116853] 116851 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 116790 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 116729 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 116668 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 116607 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 116546 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 116485 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 116424 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 116363 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 116302 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 116241 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 116179 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 116118 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 116057 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //