Array 1 490857-490649 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 490856 24 100.0 37 ........................ GTTGTCCACCTGAGCGGCCAGTGCGCCGTTGTCCTGC 490795 24 100.0 37 ........................ CTGCTGCGCGACCACGACTACCGGCAGCCCCTCCTGC 490734 24 100.0 37 ........................ AGGCGAGTTCGACCTGGCGGTACTCGCGCATTTCTGC 490673 24 91.7 0 ........TT.............. | T [490651] ========== ====== ====== ====== ======================== ===================================== ================== 4 24 97.9 37 TCCCCGCACACGCGGGGGTGATCC # Left flank : TCGGACGACATCCTCGTTCAACTTCCCGAACGCTGGGCACTCATCCACCTCACCTGGAAAGGCACCCCGGAGATACCGCCCTGGCCAAGGACCGAGTTCTACAGCACCATCCACACCCTCGTGCAGGCCCTCCAAGAGACAGACTGAACACCAAGAAACAAGATCGTCTAGCCGGACGTGTCACCCACGTCCCGAGACTGATCTGTCACGCAGGTCCTGAGACCCGACAACGCTTCAGCCACGTCTTGATGGGTGACACTCCGCCGAGTGCTGGTGGAGATGAGTGTGACCGAACAGCGACATCGGGCTGTGTTGAAGGTTCGGCCAGGGGGCTCACGGTGACGAGGGGGCAGCCATGGGTCATCCTCCCTTGAGGAGGGCTCGTTATGCTGCATCCAGACTCCATGGCTTTACAAAGGGTGCCTGACTTTTGATCTTCCGGGTCGAAGTGAACGAAAACTACATAGTTGATCTATAGAGGTGCAGGTCAGGAAGCCTGC # Right flank : GAGCCCGACGCCTTCGCGCAACAACCGCCTCAGAGTCGCGTTACGGATTGAAGGGGTGTTCACGATTCTTGGATCTTGCCGATTTCGCTCTTAAGCCAGTTCAGTGATTTGAGTAGCAGGTCTTGTTCGAACTGTTGTGGTTGGTCGCTATCTGGTTGGTACTCGACCATGGCGGCGTGAATGCGGTCGTACCAACGTTCCAGGGCAGGCCAAGAGTTGTTCTGGGCTCGCCCTGTTTCGATGGCGTGCTGGAATATGACTTTAAGCTCCTGCGCCATCAGCTCGGGCTTTGGTCTTTGTGGGTTAACCCAGTCGTCGGCGAGTACTGGCCGGAGGCGTAGGGCACGACGGTTCCAGTGCATCAGAATTTCAAGGTCGACGGTGAATCCGTCCGGCAGATTCGTGGGCCATAGTTCGCGCACTGCCGCGCGTTGTCCGGACCATGGAGTTGAGCCAACCTTGGGTAGAATTTCGGGGAAAAGGTATCCTGCTATGGGGGC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-13.10,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1511163-1510001 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1511162 30 100.0 37 .............................. TTGTCGGCGCAGCGGTTCGCCCTGGACTGGTTCGGCG 1511095 30 100.0 34 .............................. TGGCACCACCGTTCGTAGGCGGCGCGGAGTTCAT 1511031 30 100.0 37 .............................. AACCTCCGCCGGACTGGCCGGAGTGACCTCTGACCTC 1510964 30 100.0 36 .............................. TTGAGATGGGCGGCGATGGTGGGGTCGGACTGGGCG 1510898 30 100.0 37 .............................. TGCGTGAGCAGACGACCCCTGCTGTGGCCGGGACCGC 1510831 30 100.0 35 .............................. GAGTAGTCCTTGACCGTCACCGCCCGGTTGAGGTA 1510766 30 100.0 37 .............................. TTGCGGCCATACCGGATGCCGGTCGGCGGGGCCGGCG 1510699 30 100.0 37 .............................. TGTAACCGGATCCGGACCTCGTTCAACGCCGCGCCGT 1510632 30 100.0 36 .............................. GACATGCCGAGGAGTGCTGCAGTGCCGGCAACGGAC 1510566 30 100.0 38 .............................. GGTACGGGGTCGGCTCCGACTTTGCGTCGTCCGAGGGT 1510498 30 100.0 37 .............................. AAAGCCTGCCGGACAGCGGCGAACCTCACCTTATCCG 1510431 30 100.0 36 .............................. CACGGCGGCGGAGGTGCGGGAGCAGCTGCGCGTCGT 1510365 30 100.0 38 .............................. CCCACCGGGACCTGCTCGCTGACGTGCTGGATGGTGCG 1510297 30 100.0 36 .............................. ATGACACCACGTACGGCACGGGGTACGTGTCAGCCA 1510231 30 100.0 37 .............................. CTGAGGTGATCGGCCGGAAAAACGGGGCGTCAGCGCG 1510164 30 96.7 37 .............................T ACGTGGAGGACAGCCGGCGGACCCCGGCGGATGTGCG 1510097 30 100.0 37 .............................. CCAGCCAGCGGGCCGGGCGTACCGAGATGGGCACCAC 1510030 30 73.3 0 ..................T.TC.A..GCGG | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.3 37 GTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : CCAGCACCGCAGCCTCGGCCGGAAGGTCGCCTACGACGAACTGCTGTACCTGGAGGCGCTGCGGCTGGCCCGCTACTGCCTGGAACGCGAGCCGTACAAGCCGTTCCGGATCTGGTGGTGACCCGTGTACGTGATCGTCGTCTACGACACCGCCGCGACCCGCAATCCTAAGATTCTGCGTACCTGTCGCCAGTACCTGCATCACGTCCAACGCAGCGTGTTCGAAGGTGAGCTCAGCGAGGCTCAACTGCGCCGGTTTCGGAGCGCTGTCGACAGGGCGATCGACGCGTCGTACGACAGTGTGCTCGTCTATACGTTCCCTCCCGGCACGACGGGTCAGCGGCAGGAGTGGGGGCGGTCTCAACCCAGCCCTTCAGATATCTTGTGATCTTGGCCGGTTCAGCGACATGCCGAGGTAGATTGCACTACCGGAGGTTCGCTGCAAATTGAGCACGCAACTGGCCAGTCAGAGGGCCCATCACCAGGGACTTAACGTTGGG # Right flank : ATTGGAACTGACCCCCTATCGACGTTTTGGGATTGACCCCCCGGAGGTCGTTTCGTGCTACTTGTTGCGGTCCTTCGCGAGGAGTTCTCGGCGGGCTCTGGTGCGGTAGGACTCGCCTGCGAGGGTGAGGACCTCGGCGTGGTGCACGAGGCGGTCGATCATCGCGGCGGCGACGACTTCGTCGCCGAAGACCTCGCCCCACCGCCCGAACGGCAGGTTCGAGGTGACGAGGATGGAGCCGGCCTCGTAGCGAGATGCGACGAGTTGGAAGAACAGGTTCGCTGCGTCGGTGTCGAAGGGGATGTAGCCGACTTCGTCGACGATGATGAGCTTGTAGCGGCGGATCTTCTTCAGCTCGGCTTCCAGGGCGCCGCGGTGGTGGGCGCGGGCGAGGCGGTCGATCCAGTTCGTCGCGGTGTCGAACAGGACCGAGTAGCCGGACTGGGTGGCCTTGATCCCGAGCCCGATGGCCAGGTGGGTCTTGCCCAGGCCGGGCGGGC # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1519659-1520495 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1519659 30 100.0 36 .............................. GGTTTCACGGACTGTACCGACCATCAATGTTATCCA 1519725 30 100.0 36 .............................. GTGTTGGAGCACCGGCCCTTTCCGCTGTTTAGGGAC 1519791 30 100.0 37 .............................. AGACGTTCACGCCGCCACCCCCGGAAAGATCGACGTG 1519858 30 100.0 38 .............................. GGCATCTGTCGGTGAGCACGCAGGCGGACAACCTGCAG 1519926 30 100.0 34 .............................. ATGCGCGGTGCCGGCCTGTCCGGGCGGGGCGGAG 1519990 30 100.0 36 .............................. ATACGCACCAGCGCCGTGTCGTGCATCTGGTGGCCG 1520056 30 100.0 37 .............................. GTGACACCGACGAACGCCGAGCCGACAGAAGGCAGGA 1520123 30 100.0 37 .............................. ACCAGGCCGCCGCGGCAGCCACCGCCCGCAACGCCAC 1520190 30 100.0 37 .............................. AATGAGGAGGGGGCCGGTCGCTGACGGTGCATCGCGG 1520257 30 96.7 40 ....................T......... ATCAAGTACGGCGCGCAGAGAATGGCGATGCAGCTCTCGG 1520327 30 96.7 40 .........A.................... GCGTTCGCGGCAAGGCCGGTCAACGCGTGCATGTCAACGG 1520397 30 93.3 40 ......................G.A..... GGTTGGGGTGATGCCGGCGGCATCACGGTGTGGTCCGCGG 1520467 29 76.7 0 ................-.T.TC.A...CG. | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 97.2 37 GTCCTCATCGCCCCTACCAGGGATCGCAAC # Left flank : GGGCTACCAAACTCCACCACACCCCGACCACCGGCCGCATACCGGCCGCGCTGACGTCGCGCACCAGGAAACACCGGAGCACCGTGCGCGATCGGAGTCATGCCATAGGGCCCTGCACCCTTTTCATGTAGCCGCTCTCCGAGATCAGGATGCGCCACCGCAAGCAACTGGTACGCGATCCCCCGCCCGGGAGCCAGCACCATCGGCCACGGAATCTCCGACGCCCGCGTCACCACGTGCACCCGCAACCGCACCAGCACCTCCCTGCTCTCGTCAACGACGCGGTCACCCTAGACAGACCCACCGACAAAAGAAGTGATCTGTCACATGAACGACGCTCTGCGCCAACGCCAGATCCAGCACCCGACGGGACCGAGACCTTGATCATCTAAGCCGATTGCAGCGATACTCCGGGGTAAGCTGCAGCACCGGAGGTTCACTGCAAAATGAGCCAGCAACTCACCCAACACGAGCCCCCTGACCAGGGACTTAAGTTTCGG # Right flank : CCCCAATCCTGACCACCGTGGTCCGGGCGGGTTCCAGTACTTGTCGCAACACACCTGATCATGTGAGGCGTGTTGATGGGACGACGAGGACGGAAGCGCCGGCTCGAGCTGGAGACGGAGTACTGGCGGCTGCTGCAGTCAGGCATGGGTACGTTCGAGGCTTGCCGCATTGTGGGGATCGGTCGCAAGACCGGCTATCGGTGGCGCGCGGAGAGTGGTGGTGTGCCGCCGGCCCGATTGGCTGAGGGCGTCTGGTCCGGCAGGTACCTGTCGCTGTTGGAACGGCAACGGATCGCCACCCTGCGCAGGCAGGGCCTGACGATCAGGGCGATCGCTGAGCAGTTGGGCCGGGCGCCGTCGACAGTGAGTCGGGAGTTGCGCCGCAACACCCGTCCGCATGACCAGGGCGTCTATGACGGCGATCTGGCGCACGCGCGGGCCCGGCAGCGGGCTCAGCGCCCGCGGGGAGGCCGGCTACTCGCCGACATCGGTCTGCGGGC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACCAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 1765145-1764078 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1765144 29 96.6 32 ............................A GGGGGTCACCGATGCAGCGAGAGCGGCGCAGC 1765083 29 100.0 32 ............................. TTCGCCTCCGCGAAGAAGCAGGGCTACGAGAA 1765022 29 100.0 32 ............................. ACCGGGCGGAGCGGGCGGAGGTCAGAGGCACC 1764961 29 100.0 33 ............................. CCCAGGGCCGCCAGGACATCGGTGTCAGCGCAG 1764899 29 96.6 32 ............................T GAGCCGTGCTAGGCAGAGGCTTCCCCCGGCCT 1764838 29 96.6 32 ............................T CGGGTGCTGTTACGCCGGCCGTGACGGAGACG 1764777 29 100.0 32 ............................. CCCTCCTGGACGACCTCGCCGCCCGCCAAGCC 1764716 29 96.6 32 ............................C CAGGCACCGAGTCCGTTGGCGGTCACGTCCCA 1764655 29 96.6 32 ............................C CGCATGATGCCGGCCGCTGCTACATCGACGGG 1764594 29 96.6 32 ............................C GCGGCAGGCAGACCGGGCTGTTCGTCGGTATC 1764533 29 100.0 32 ............................. ACGAAGCCATGCGAGGCGTATGCAGCCTCAGC 1764472 29 100.0 32 ............................. ACGAAGCCATGCGAGGCGTATGCAGCCTCAGC 1764411 29 96.6 32 ............................C GTGCTGGGGCGGAGCGTTCGGTAAGGTGCCGC 1764350 29 96.6 32 ............................T ACGATTGAGCAGGCGACGCGATACAGCCCGGC 1764289 29 100.0 32 ............................. ACGTTTCAGCATTTGGCGTGGGTGGCTCGCCG 1764228 29 96.6 32 ............................T CAGCGCCGCTTGGACGACACGCTCCCAGCGTC 1764167 29 100.0 32 ............................. CGGTGGGGGCCGGTCGGCGGTCAGCGTGGCGA 1764106 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCG # Left flank : ACCCGGATCGTTCGCGACATCAAGAGCCTGCTACTCGAAGACGGCCACGCGTTCACCGACGAAGACCTCCACGAACTGTGGGACGACGAACTCGGCAACGTGCCCGGCGGCATCAACTGGGCCTCCGACTACGCCGACAGCCTCAATGAACAAGCCTTCATCGCAGTCAGTGGACCACCAGTCGATGACGAGAAGGTGGACTTTTGACCGTTATCGTCCTTATCGCCACCCAGCAAGGTCTACGCGGCCACCTCACCCGATGGATGATCGAAGTCGCCGCCGGTGTCTTCGTTGGGAACCCCAGCGCTCGCGTCCGTGACCGCCTCTGGAACCTCCTCATCGACCGCGTCAGCGACGGGCAAGCCATCATGGCCGAGCCAGCACAAAACGAACAAGGCTGGGCCATCCGCACCACCGGCAGAGACCGATGGCACCCCGTCGACCTCGACGGACTAATCCTGACAGCCCGAAACCGTCGCTAAAACCCCAGGTCAACAAGC # Right flank : TACGGCTCGCTCGACATCGAGCAATGGGGAGCTAATGACCCGGTGCGTGTTGTTCACGCGTCGGGTCGCACCCTGCTTGTCGAGGTACTCGAGAAGCGGTACCGCGACGCGGCGGCTGGTGTCCCATGCGGTGCGGGCCTGGCTGACGGTGAACGGTTGCTCGATGCTCGCGAGTCGGCGCGCCGCCTCGGCCGGTGCGTCGGGTAGCAGGTAGACATCGGGTGCGAGACGGCAGAGCAGACCGGCGTTGACCGCGGCGGCGAGGTGTTGGCGGGACAGCCGGTGTCGTGTGAGCTCCTCGGTGCTGGGAGCGGCGAACGGGTCCTCGCGCAACCGCGCGTGGATCTCGTCGATCGCTCGGCGCACTGGTTCGGGGAAGCGCGTCTTGGCGTCCTTGCGGCGCACGCCGCCGCTGTCGAGGACAAGCCCTGCGTCGGTGATGAGCGCTTCGATCAGCCGAGGATCGGCGATGCCGGCTCGCCGGGCCGCCGCCTCCGGCG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1774740-1775926 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1774740 29 100.0 32 ............................. TTGGCGGGTGAGCCTTATGACCTTGCCTTGGT 1774801 29 100.0 32 ............................. CCAATGACGCCGGCAGGTGTTTCGTCGATGGG 1774862 29 100.0 32 ............................. CGCCTGATGACCGAGTACCGGATCGGCGCACC 1774923 29 100.0 32 ............................. GTGCACACGAGTCCGCCCTGAAGTTGGGCAAG 1774984 29 96.6 32 ............................A CAGCCTCGGCGACCTGGCCGTCCTTGCTGTTG 1775045 29 96.6 32 ............................G GGCGACCTGACACCGGGCATGGCTGCGGCTCT 1775106 29 96.6 32 ............................T TCACTGGATCCTCAGTGGCGCCCTCAGCCGTG 1775167 29 96.6 32 ............................G CCCAGGGCAGCGGCGATCCGGGCGAGGGGGGT 1775228 29 100.0 32 ............................. ACCCCTGACGGCGGCCACTCTCCCCCCGCTGC 1775289 29 100.0 32 ............................. GGCGCGGGCGCGCTGTTGAACGCCATGATCCC 1775350 29 100.0 32 ............................. CCGGAGCAGCACATCGGGATCCAGCTCCCGGA 1775411 29 96.6 32 ............................T ACACCGGAGCCGTCGTCCGCATCGCCGGACTG 1775472 29 89.7 32 .............A..........C...G CTCCGCACCTGGCTGGCGCGCGGATCCTTCGT 1775533 29 93.1 32 .......................GA.... GAGCGCAGGTTGCCCAGCCCGCGGGAGAACCG 1775594 29 79.3 32 ..GC.........A.........GA...G TCCGGCGGTAACGGTGGAAGCTGCGTGGAAAT 1775655 29 82.8 32 ..GC.........A.........GA.... TTGGTGAACCAGGCGTCCAGTAGGGCCACCGC 1775716 29 79.3 32 ..GC.........A.........GA...G CTGGTACGCCGACGAGCCGAAACCGGGCTGGC 1775777 28 79.3 32 ..GC.........A...-.....GA.... CCGGGCGCGATCTTCGTCGGCTCCTACTCGCG 1775837 29 75.9 32 ..GC.........A...A.....GA...G ATGTAGTGGTCAATGTTCACGCCGGCCGAGTC 1775898 29 79.3 0 ..GC.........A........CGA.... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 92.1 32 CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Left flank : TGCACTGAAAAGCAGGTGTCGCCTTTCCGACATCGTGAACCCCACACAGCAAAGCCAGAAACGCCCTCCCCCGACCGCCCGTACAACCATCAAGCCTGTCCCGTACCGACGGTGCGAGATAGTGATCCCACAGGCACTCACCCACCGCCGCCGCATCAAACAGATGCTGGAGTAGCAGGTTCATGCTGCCTTCGGCACTGGACTTACCCCAGAAAACCCCGAGAGCGGGATGGCTCGCCAAACTCACCCATCAGACGCTAGCGACCACCTCCGACAATCCGCATCGACAGCAACCGGCAACCGCCTTCAACCGCCCGCAGCTGACGGGCGTCCTCGGCGCCGCAACCTCGGCGGCCGGCTCGCCGGGCCAGCCGACTCCTGACGGCCACCTACCTCCCGAAAGGTAGCCAGCCACAGCCCCCACGAATCGGTGTCCGCCAGCTACGATCGAACCGATCTAAAATCACCAAGAGCGCCAACAAAGTCGCAGGTCATCAAGC # Right flank : CACACGCATCAGTCGTAGGAGGGCGACCTGGTATACAGCGGTGAGCTGCAACCGTATGGGTACGTCATGGCCTTGTGAATCTTCCCGTACCGCAACGGGTTCGCCGCCTATGTCTGGGTCACCAAGCCGGACGGCAAGCGCACCCGCAAGTACGCCTACGGCAAGACCCGCGATGAGGTACACGACAAGTGGATTCGGCTACACCAGCAGGCCAAGGCCGGACCGATCGCCACGAACGTCCCCACGTTGGCGAGCTACATGACGTACTGGCTAGTACTCCAGCCGGGGTTGTTGACCTTGACTGAGCTGCGGTTTGATGCGATGCGGGAACGAGGGCAGCCACCGCCGATCATGGGTGGTTGTGTGGACTGACCATGATGCAGCGGTGGCTGCCGGATACAGGGTAGACGCCCAGCGGTGGCGGGTGTTGTTCGACGACTTGATGCTGACGGTCGGGCAGCGTTTCCGCAGGCCGGAGCCTCGCCGTCGGGTGCGTGACT # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGTCCCCGCACGCGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1806833-1806642 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 1806832 36 100.0 35 .................................... GGCCGGCGAGGACGTCCATGACCATGGTGGTGGGC 1806761 36 100.0 48 .................................... CCTGGCCCGGCTGGCCCGGCTGGCCCGGCTGCCGCACGGCGCGCCCGA 1806677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 3 36 100.0 42 GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGAC # Left flank : GGCCGTGTCGGTGGCCGTACTCCGGCGTGATCTCGCCACACGACGGTTCTACCGCCGCCGGGCACTACTTGCCCGTTGCCTGGCCCGCCGTGCAGCAGCACGTCTACCCTCTGACGGTACGTGCGTGACGAGCGCGGGACGCGACGGACGAGGTCCTGATGCCCCCAGATGGCTGGCGCCTGTACGCGGGCTGGTCCCCGCAACTGGGCGTTGCTGCGGGGACCAGCTTGTCGGTGGCCTGCGGCCAAGGCTGCTCCACCTGCGGGTGGCCGTGGCCAGCAGCCGAGCGGTGACCTCGTCGACCTGTTCAGGTTCGCCGCGGGCCCTACCGCTCGCCAGCGCCGGTCCTGCGCTGTGGATAGCTCCGGTGCTTGTGGATGATTCCCTGATCATGGCCGGATCTGCTAGCCCTCGTGTCACCAGCAGCGCGGACGCAGGGGCGGCCGTAGAAGGGACCACACTCGTATGGCACCAAGAGTAAGGCGTGGACGACGTTTGAA # Right flank : TGGGTCAGAATCTTAGCCGCTCTGACCTGCACCTGAACCGGTCTGCTGCGAAGGGTGCGCTTCCTGCGAGGCGGAGTAGCGCTCAAGGCCGCGTACGCAGACCTACCCGGCATGTGAGCTGGGCTGACACCTTGGCGACGGGTCCGCGCTTGGCGGCGAGACGACGCAGGCTTCGCCGGTGGTTCAGAGGATCGCTGGTCCGTGGTTGGTGATGGTGCGGCTGCAGCCGATCACGTCGAGTGGTCGACGGTTGTTCTCGCGAAGGGTACCCAGGTTGCAGAAGATGACGGAGTCTCTTTCCTCGTCGATCATTTCGGTGAGTTGGGTGCGGAGCCGTAGGAACTTTGCTGGCCGGGTGTTCACGATGAACACGCTGTGCTGTATGCGGTCGCCGTATGATTCGAGTTTCTTGGCGACCTTCGTTCGGCGGATGTCGTCGGATATGTCGTACGCGATGAGGTAGCGTCGCACGTCGTCAAGGTTCATCGGGTTTTGATGCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 7 1807985-1807727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1807984 35 97.1 35 ....................C.............. ACATGACCGATAGCGCGTGGCTTGCCCGCGCGATG 1807914 35 100.0 40 ................................... CAACATGCTGAGCTGGCACTGCGATCGCTGCCACACCCCG 1807839 35 100.0 43 ................................... TTCTACGGGCACGCTTTCAGGCACAGCGTTTGCCCACAGACTC 1807761 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 4 35 99.3 40 CCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Left flank : ATCCGGTGCACCGCACTCATGCGCGCAGCGGCGCTCGACCTCAACGAACAAGGCGACATCTGGGCACGAGTCGTCCAGCACCGCGCCGAACACCTGCCGCCCACCCCCGACACCCGCACCTGGGAAGGCTTCACCAACAACGTCAGCCACCTGCTCACTGGCACCGCCCGAACCACCGACGGCTGGCACGCCGCGTTCACCGAAGCCGGTATGGAACTCCGACGCCAACGCGAAACCGGCCAGCTCACCCGGGGTCTCCGTGCCGTGGTCGCCCTACACGTGATCTTCCACTGGAACCGGCTCGGGCTGCCCGCCGCCGCCCAGGCCACTCTCGCGCAAGCCGCCACTGAAGCCATCTTCGGCACCGCACCTGCGCCATCGGGTCAGCACTCGACACCGCCGGCCGACTGAGATCGCCAGCACGCCGAGCCGACACCATGGTGTGGTGGCGGAGATCGACGCTGACGTGGCGTTCACGCCACGCTGTGACACGCTCCGCG # Right flank : TGGGTCAGAATCTTAGCCGCTCTGATCTGCACCTGAACCGGTCTGCTGCGAAGGGTGCGCTCCCTGCGAGGCGGAGTAGCGCTCAAGGCCGCGTACCCGCAGACCTACCCGGCGTGTGAGCTGGACTGACACCCTGGCGACGGGTGCGCGCTTAGCGGCGAGACGACGCGGGCTTCGCCGGTGGTTCAGGGGCCGTCGTCCCCAGATGCCGTTGCACCACCGCCGGACGCTCGCCTCCACGCAGGTGATCGTACGCATGTTCGTTTCGTGGTGAGGTGGGATGGCGTACAAGCCTGCCCGTGCGGCGCCAGGGCGGGTTACTCGCAGCGGTCTTCGGCGCCTCGGCCGTACGGCTCGCAGCAGTCGGGACGGTGTCGGTAGACCCGCAGGTTGCGGCCGTGTCGGTGGCCGTACTCCGGCGTGATCTCGCCACACGACGGTTCTACCGCCGCCGGGCACTACTTGCCCGTTGCCTGGCCCGCCGTGCAGCAGCACGTCTA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCAATGAAGGGCAGCTCCGCTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 8 2205585-2206278 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 2205585 24 100.0 37 ........................ GTTGCGGCTGCCGCCCTCCGGATTGAACCCGGCCTGC 2205646 24 100.0 37 ........................ CTGAATTGCTTGGCCGGCGGCCCGCGCGGCTTCCTGC 2205707 24 100.0 37 ........................ GTAGCTATCCAGAGCGGTCGTCTTCTCATACAGCTGC 2205768 24 100.0 37 ........................ GACCTGGGCCACGCTACTGGCCCCACAGGCAAGCTGC 2205829 24 100.0 37 ........................ CTCATAGGTCCGGCCCCGGGTTGACCGCAGAGCCTGC 2205890 23 95.8 37 .................-...... TGCAGGATGAGTACGCAGACTCCGGCTGTCCGACTGC 2205950 24 100.0 37 ........................ CCCGGCTACACCGACCGCCTACGCGATCTCATCCTGC 2206011 24 100.0 37 ........................ CACCCACGTACTCCCACCCAACGCCGGCAGGACCTGC 2206072 24 100.0 37 ........................ CGCCGGTAGCAGCGCCTGGACCCCGTCTGCCACCTGC 2206133 24 100.0 37 ........................ GTCAAGGAGCTTCATCCGCTTGACGACCTGTCCCTGC 2206194 24 100.0 37 ........................ GGGCCGTGCCTGCGACTGGACGATGACCAGCGGCTGC 2206255 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 12 24 99.6 37 TCCCCGCACACGCGGGGGTGATCC # Left flank : CGTTGATGACCCGCTGGGTGGCGTGCTCTCCGCCGGCGAGCAGTAGCCGCAGGATTGGTCCGGTGCTGTCCTGGTCGAGCCACGCCGCGTGCGCCGGGACGTGACCGGCCGCCAGGCCGCACGCGCGGTCCGGCGCTGACGCGGCGGCGGGCCGAAGGCCCGCCCTTGACCAAGTAAAGAAACTCTGAACACACACGCTTCAGCCACGTTGTCCGACTCCGGTTGATGCGTTACAGGTTGGCTTCACTTGATGGGTGACACTCCGCCGAGTGCTGGTGGAGATGAGTGTGACCGAACAGCGGCATCGGGCTGTGTTGGAGGTTCGGGCCGGGGGGCTCACGGTGACGAGGGGGCAGCCATGGGTCGTCATCCCTTGAGGAGGGCTCGTTATGCTGCACTCGGCCTTCGAGCTTCACAAGGGTGCCTGGCCTTGATTTTCCGGGTCGAGGTGAACGAAAACTACATAGTTGATCTTTAGCGATGCAGGTCATGAAGCCTGC # Right flank : CCGGGCCCGACGCCTCTGCGCAACACCACCGCCTCAGAGTCGCGTTACGGATTGAAGGGGTGTTCACGATTCTTGGATGTTGCCGATTTCACTCTTGAGCCAGTTCAGTGATTTGAGTAGCAGGTCTTGTTCGAACTGTTGTGGTTGGTCGCTATCTGGTTGGTACTCGGCCATTGCGGCGTGAATGCGGTCGTACCAGCGTTCCAGGGCAGGCCAAGAGTTGTTCTGGGTTCGCCCTGTTTCGATGGCGTGCTGGTATATGACTTTTAGCTCCTGGGCCATCAGCTCGGGCTTTGGTCTTTGTGGGTTAACCCAGTCGTCGGCGAGTACTGGCCGGAGGCGTAGGGCGTGACGGTTCCAGTGCATCAGAATTTCAAGGTCGACGGTGAATCCGTCCGGCAGTTTCGTGGGCCATAGTTCGCGTACTGCCGCGCGCTGTCCGGACCATGGGGTGGAACCGACCTTGGGTAGAATTTCGGGGAAAAGGTATCCTGCTATGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 4398738-4395100 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB900614.1 Salinispora mooreana strain DSM 45549 Salpac6DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 4398737 37 100.0 36 ..................................... AATCGACCCGACGTACCTGGACGAAGCCCTCGGCGG 4398664 37 100.0 38 ..................................... CAGTACCGCGTCAACCGCAAGGGCGACGAGGTGGGACA 4398589 37 100.0 37 ..................................... TGCTGATGTGGTTGAGCACCCGCGTGTACGCCCGTCT 4398515 37 100.0 39 ..................................... ACGACTCGCCACCCTCAGCGCCGACGCCCTCAGCGGTAG 4398439 37 100.0 37 ..................................... AGGCGTCATGATGGTTGTGCTCCTTGCTGGGAGTGGT 4398365 37 100.0 36 ..................................... ATCACGGATGTTCCGGACGGCGAAAAGTCGACCGAG 4398292 37 100.0 37 ..................................... CACTGTGTGGTCACGGTGTCCTCGTGGGCTCGGGTGC 4398218 37 100.0 37 ..................................... GGGTGTTCTTCCGATACCCGAGGTTCGGGTTGGCCTG 4398144 37 100.0 34 ..................................... GTTCATCCGCCTACGATCACCGTCGAGGCACTTG 4398073 37 100.0 34 ..................................... GTTCATCCGCCTACGATCACCGTCGAGGCACTTG 4398002 37 100.0 38 ..................................... TCGCATGCGTATCGAACACGGTCGGTGATAGTCGACAT 4397927 37 100.0 39 ..................................... CCGGCACGATCTCTCCCGTGCGGGGGTCAACGACCACGT 4397851 37 100.0 34 ..................................... TACTGCCTTGGCTAGCAGCTCACGTGCCTGTTCG 4397780 37 100.0 38 ..................................... TGCACCGGGACCGAGTCGAGGCATGGACAGACGCCACG 4397705 37 100.0 37 ..................................... CGTTGCGCTGGCTCGCCGACCACACCGGCGCGGGCCG 4397631 37 100.0 34 ..................................... GGGACGGTGCGGGCCGGGTTGTGGCCAAGGGCAG 4397560 37 100.0 35 ..................................... GGGGTAGGTCGAGGCCATCATGAGCAACGCGCCGG 4397488 37 100.0 36 ..................................... CAGAATCCTGAGATCGCATTGAACGCGGCCCGGAAG 4397415 37 97.3 37 ......T.............................. TCAACGGGTGTTTCGAGGGATGTCGGGGTCCTGGCGG 4397341 37 100.0 37 ..................................... CCGCACCGACCTGCGCGGCCAGCAGCGCGCCCGTCTT 4397267 37 100.0 35 ..................................... TTTTTTGCGCGCGACCACTGAGGGATGGTGATCAT 4397195 37 100.0 39 ..................................... GATACTGTCGTACAGGTAGCCGATATCGACGGCTTGCAG 4397119 37 100.0 34 ..................................... GGTCGGGGCTTGATGCCCGCACTCGCCCCCCGAA 4397048 37 100.0 38 ..................................... TCGGGTGCCGGTCAGGGGAGCAGCCCCAGACCCCACCG 4396973 37 100.0 36 ..................................... CACAGCCGGCCAGCCAGCCTCGCGGTCACCTCGTGG 4396900 37 100.0 38 ..................................... CTGCTCGGCACGCCGCTGCTGATCTCGGATCCGGGCCA 4396825 37 100.0 36 ..................................... CCCTATGTCGTAGCGCAAGCTGCGGCCGTTTCGCCG 4396752 37 100.0 35 ..................................... GTAGCCCTGCCGCAGCGCGTCAGGCTCACACATGA 4396680 37 100.0 35 ..................................... TCTACGAATCTACGTAGTAGATTACGGAATTTCGT 4396608 37 97.3 36 ..............T...................... TGGCCATTCGATCCCGGACGAGGTCGGCGCGGTCTG 4396535 37 100.0 37 ..................................... ACGCTCGTCGAGGTCATCGTCAGCGTCAGCGCGACAG 4396461 37 100.0 39 ..................................... CAGGCGGTGATCTCGTCGTTGTCCTTCGAAGCGACCCCG 4396385 37 100.0 35 ..................................... ACCACCGATGAGGCGGCCGTGTTGGAGCGGATTAC 4396313 37 100.0 37 ..................................... ACCGAAGGGCAGTGCGGTCCCGCCGGGAAGTACGCCC 4396239 37 100.0 36 ..................................... ACATAAGCGGCTTCCGGGCTGTCCGGCAGGTCGTTG 4396166 37 100.0 39 ..................................... TCTCCGCGTGCCCGCAGGGCATGACTGACCCCCCAGGAG 4396090 37 100.0 38 ..................................... ACTCATGGTCGAGGTTCCCTCTCGATCTAGGGCCTCCG 4396015 37 100.0 35 ..................................... GGTTCCGCGGGAGTGGCGTGGCCTGCTCGGCGTGG 4395943 37 97.3 40 ..G.................................. CCGACCCGTATATCCAGTTCTGCGGGCAGACCGGCTACAT 4395866 37 100.0 38 ..................................... AACCAGGCCGCGATGAGCCCGGCCCCGGTCCCGCTCAG 4395791 37 100.0 34 ..................................... TACTGCCTTGGCTAGCAGCTCACGTGCCTGTTCG 4395720 37 100.0 35 ..................................... ACGTGCCCAACACCATCGGCCACCGCTCCACGAAC 4395648 37 100.0 35 ..................................... TCCTACACCGACGACCCGCTGTATCCGGGCGTCGT 4395576 37 100.0 37 ..................................... CGGGCACCGCACGCCGTAGGTGTTGTTCACCTTGCAG 4395502 37 97.3 36 ...........C......................... GCGTCCGGGAACTGTCCCCGCCGCTCAACCTCCTTG 4395429 37 100.0 40 ..................................... ATCGCGGCGTGCGCCAAGGTAGCGGGGGTGCTGGAGACCG 4395352 37 97.3 32 .........G........................... CGGGTCGGCGGCTCCTGGCCAACGTCGGCCAG 4395283 37 97.3 38 .........G........................... TGACTCGGCGCGGGAACGTCGACCAGGAGCCCAACCGG 4395208 37 91.9 35 .......T.G.......................A... TTCCACTTCACCCCACGCTTGCGGGTCTTTCTCGG 4395136 35 83.8 0 .......T................--.C.T..C.... | GG [4395104] ========== ====== ====== ====== ===================================== ======================================== ================== 50 37 99.2 37 CCAGCGCCGACGGTCCACCGTCGGCGAGGATCTCAAC # Left flank : CCACTCATCCAAGCCCGACTCCTCGCCCGGCACCTACGCAGCGACACACCCCACTACAACCCGTGGAGCCCCGCATAATGGAGTACCTGGTCACCTACGACGTCGACACCACCACTCCGGAAGGCCAACGACGCCTACGGCAGGTAGCCAAGATCTGCGAAGGCCACGGCATCAGAGTGCAAAAGTCTGTTTTCGAAATTGCCTGCACCGCTGCCCAGTACCCGACCTTCCGCCAGAAGCTCTCCGACACCATCAGCCACACCACCGACGACATTCGGCTCTACCACCTCACTAAAGACACACTCCGCCACGTGGAACGACTCGGCGTCGCACAGCTCGCACCCCACCACGGCGACCACCTACTTTAAAGATCTAAGAACCCCAAGCGCGATAGCAACAAGCGCGAGGTTCCCAGGCAAGAAAACCAACAAAGCGGACACCGCTCACCTGCCATTCAAAGCTAGCGACAGCCACGACACCAAATCCGCAGCCCAGAAAGC # Right flank : TTGGTATGTAGGTTTCAGCGGCTGGGAACGGTCGCTGAAGGTCAAGGCGAAGGCGTTCAACACGGGCTTCCAGCGCATCGTCCATCGGGTTCTGCCTGCTCCGGTAGGGTCCAGGGAGCGAGTCACCAGGTACAGACACTTCAACGCGGCCTGCTCGACGCCCCTGTGTTTGGTCAAGCAAGCGTTGGCCCGACGACCCCGATTATAGTCCTGAAGATTTCGCGGGCGAGGTAGCGCTTCAGGCAGCGGAGGATCTCGCGTTTCGTTCGGCCTTCGGTGGTTGGTCGCTGGACATAGGCGCGGGTGCCGCGGGTCGGCACGGAGTCTGGTCAGGGCGTTCGATCAACTACAGAACACAGCCGCTATCAGCGCCCCGGCGACCAGGTACGGACCAAAGGCAATGCTGTGCGCACGGCGCAGCGCCAGGCGTGCTAGCGCTTCGGGTACGGCGAGCACGAAGGGCAGTAGGCCGCCGAGGAACACCGCAGGCCAGCTGATGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCGCCGACGGTCCACCGTCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.00,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //