Array 1 14705-10897 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANT01000004.1 Acinetobacter puyangensis strain ANC 4466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14704 28 100.0 32 ............................ ACCGTCATCGTGGCTTTGATTTCTTTTTCATT 14644 28 100.0 32 ............................ AACAGGCAAAAAGTGAGGGTTTAATATGAAAT 14584 28 100.0 32 ............................ AAGGACAATTGAAATTCCAAAATCAAAGCCAG 14524 28 100.0 32 ............................ GTTTAATTACTTTCAGCAACAACAACCGATGC 14464 28 100.0 32 ............................ ACCCATAGAAACAGGTATTTCACGATCAACAG 14404 28 100.0 32 ............................ CACCAGCAGATCGGGTGGCTCGTGCAACACAA 14344 28 100.0 32 ............................ TTGGATTGTTAAAGTTTTCATATTCATATCTC 14284 28 100.0 32 ............................ TTGTGACTCAAGGGATAAATAGAAATTCATAA 14224 28 100.0 32 ............................ CATGAACGTCATCTCCCATTTCACGTAAAGTT 14164 28 100.0 32 ............................ TACAGCGCCAGCGCTTGCAACGATAAAGTTAG 14104 28 100.0 32 ............................ TAGTTTGTTTTGCATAACAACACGATGCCATT 14044 28 100.0 32 ............................ ACACCAAAGAAAGAACGTGAACAGCTTTTATC 13984 28 100.0 32 ............................ CATTTCTCGTTGCTTGCGTTCTTGCTGCGAAA 13924 28 100.0 32 ............................ AGTGCGAATACCACCGAATAAGATACCTTGAT 13864 28 100.0 32 ............................ TGTAGTGTTGCGTCTGAAATATCTTTACGTGT 13804 28 100.0 32 ............................ GTAAAGGCATTATTGCTAAGTGGGGTGATGAA 13744 28 100.0 32 ............................ ATTTATTGATCGAATCTGTGGGCGACACAGTA 13684 28 100.0 32 ............................ TTAAATCTTGAGTTTGTATCTCCCTTATCCAT 13624 28 100.0 32 ............................ TATACAAGCGGATGGACACCACAGGCTATCAC 13564 28 100.0 32 ............................ TTGAACGAGCGTGTTAAACGTACCCTCGTCAA 13504 28 100.0 33 ............................ AATGAATCACGCATAAATCGACGTTCCCGAAAT 13443 28 100.0 32 ............................ ATTAAATTCAACAGTGTCGATCGACAAGGCGA 13383 28 100.0 32 ............................ ATTTATTTAATACCTATGCTATACTTAAAAAT 13323 28 100.0 32 ............................ AGTAGTTCGCTACTGGGTTCTTACTTCTGTGA 13263 28 100.0 32 ............................ GCGATTTTTGAACGCTTCTGAATGTTCTACAC 13203 28 100.0 32 ............................ ACAAATGTGGTTCTTGGCTCTGTTGTTTGTAC 13143 28 100.0 32 ............................ GGCAAGTTGGACATGATTTTGCTAAAGGTGGC 13083 28 100.0 32 ............................ CTTATGGTAACTGTCATTTAATGCTGTAAAAC 13023 28 100.0 32 ............................ TTTTCTCTACACCGATGATGCAGGCCATTTTA 12963 28 100.0 32 ............................ ACAGGCTTAATTGATCGCCTTCCTTTTTACCG 12903 28 100.0 32 ............................ ATGAATCCACCATACATCGCTGTAACATTTCA 12843 28 100.0 32 ............................ GATATCTGCAAGTTGAGGATTTGCCTCCAGGA 12783 28 100.0 32 ............................ AATTTGTTCTTAACAATGCCATCAAGCAGGTT 12723 28 100.0 32 ............................ TATAACGGCTATGGCGATCTGCTCGATATTGA 12663 28 100.0 32 ............................ AAGTTGAACGGCTTCGATGCATCATATTTAAC 12603 28 100.0 32 ............................ AACAGCTATTTTTGCATCATCAACTAAATCAT 12543 28 100.0 32 ............................ TTTTCTTTTACTTTTAAATCATCACGAACATT 12483 28 100.0 32 ............................ TGTAGATCAAAACCGTGTTTATAGAAATGCAT 12423 28 100.0 32 ............................ TTTTAAGAAAACATTTAAATGTCGGGTGCGAT 12363 28 100.0 32 ............................ ATCATCCCACCTCGCCATCTTTCATAAACCCA 12303 28 100.0 32 ............................ AATATCAATTTTATTTGCACCATTACTTGTAA 12243 28 100.0 32 ............................ TTTAAATCATTTAAAAAACATTGATCATTTGA 12183 28 100.0 32 ............................ AGAGCAGCAGCTATGGGACGAACATGACATCG 12123 28 100.0 32 ............................ ACAAATGACGACTAAATCGGTTGCATCTTGAT 12063 28 100.0 32 ............................ ATTAAATGCAGCAACAAGATCATCGGCATTCG 12003 28 100.0 32 ............................ TGCATTTGTGATATTTGAAAACCCGGAATATT 11943 28 100.0 32 ............................ ATTAAATGCAGCAACAAGATCATCGGCATTCG 11883 28 100.0 32 ............................ TGCATTTGTGATATTTGAAAACCCGGAATATT 11823 28 100.0 32 ............................ TTTAATTGGACACCCCAGCGGGAAACGTGCCA 11763 28 100.0 32 ............................ TGTGCAATGTATGACGGTGAAGATGTCACGAT 11703 28 100.0 32 ............................ AAAATCAATGGATGTGGAAGACGAAGAAAAAG 11643 28 100.0 32 ............................ AAACGGGATAAGACTCCACGACACGCTGCACA 11583 28 100.0 32 ............................ TACTGACTATTTTAAAGGTTCATATCCTGCTC 11523 28 100.0 32 ............................ ATTCGGATTATTTGTATCAGAAGGCGGATAAT 11463 28 100.0 32 ............................ TATACAACGGTAGGTCAACAAGTCATTGACGA 11403 28 100.0 32 ............................ TATGGGCTTCTCTGAGCATATCTTGCTCTGAT 11343 28 100.0 32 ............................ TATGAATCCCGATGGTTCTTCTTATCAAACTG 11283 28 100.0 32 ............................ CATCGTCTGAAACACCAGTCGGATTAACAGCA 11223 28 100.0 32 ............................ TAATGCAAATCCTAGGCCTAATAATAATATCC 11163 28 100.0 32 ............................ TAGCCGTACTTCGAAAATTTGGAGTTGCATCT 11103 28 100.0 32 ............................ TTGTTAATCATAAGTGCTACTTAAAACATGAT 11043 28 100.0 32 ............................ TCGTGAAGTGGGTGATAAGGAAGTCTTGTCTA 10983 28 100.0 32 ............................ ACAGAATCACCCGTGGCCGTATGCATGCCAAA 10923 27 92.9 0 ..................T.....-... | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.9 32 GTTCACGGTGGCATACACCGCTTAGAAA # Left flank : GCAAAAGCTTCCGTTTTAGAACGGGAGTTTAATTTACGCTATTCTGGTAAACCTATTACTTTGCATGGGGTAAGAAAATGGCTAATTGGTGAAGCCATTCCACCCGCGGATAAATTACTCACGCTTGCCAAATGGCTCAACCTTCCACCCGAAGAACTTGCTTTCGATAAAGATATCCAAAAAGCAATTCAACAACGAGAAGCCCACTGGCAAGACGAAATTGGTTATAAAGATAAAGAAATCTTTGATGCTTTTATCAAACTTCCCGCTTCACAAAAGAAAATTGTTAGAGAGGTGATTGTGGCATTTGCCAAAGCATATCAGGCTGAAGATGACTAACTTTTATTTCTAGATCATTCTGTTAAAATAACCCAATATATTCCTACTCTTTAGCATCTTAATAAAATCAACAAGTTAATAACCATACCGAAATCTTTGGTATTACAATTTTTTTGGTCATAACTTGTTGTTATTCATTTTTAATTTTTACTTTATTTCTA # Right flank : TTTAAATCAAACAACATTCTTTAAAATATTTTGCTCACCATGTCCCTTGAACTTTAGGGTTCAAGGTTGATACAAAGTTTTTTCTGTATTATTAGAATATCAACATTGCCCTGCCAAAATAAAAAAGTGCCACATCAGGGCACTTTTTTTTGAGCATCTCTATTAACTTTGTTCTAAAGTCATGCCTGCATCGCGTGCAGCTCGAGTTCCTCCCATTAAAATCACATATTCACGCTGCTCATCAATCTGATTTAACTGTTCTGCCGCTCGAGGTGCCTTGCTTCCTCCGCCACATAGAATATAAATCGTGGCTTCAGTGGGCACTTGCTGTAAATTACTTTCGTTTAAGGTATCAATCGGATAATTGATTGCACCTTGAATATGTCCTTCGGCATAAGATTTTGGATCTCGTACATCCCAAATAACAGCACCTTCGGGAAATTCAAAGGTGGTGATTTCTTGCTTGCGGATCATTCTGCACTCCTTTGATCAAAACAGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGTGGCATACACCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 151644-150712 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANT01000002.1 Acinetobacter puyangensis strain ANC 4466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 151643 28 100.0 32 ............................ GCCAAAAAGACGCATAACACGACGCACACTAA 151583 28 100.0 33 ............................ CCTGTAGGATTTTGGCAGGGCTACAACGCAATT 151522 28 100.0 32 ............................ TCTAGAATGTATTAAGTATTCTAACAATCCAT 151462 28 100.0 32 ............................ ATTGGGCAAATCACGCCAATCAAAAGGCTTAT 151402 28 100.0 32 ............................ TCATCAGGTCAGGTGCAAAGTTAATGAGCATT 151342 28 100.0 32 ............................ TTACTGTGTCGCCCACAGATTCGATCAATAAA 151282 28 100.0 32 ............................ TCATCCATTTCATAGATATAGCCACGCCCCAA 151222 28 100.0 32 ............................ TCTGCGTCGATCACGGGTGGTCCCTATGGCGA 151162 28 100.0 34 ............................ TCGTAATCGAAAGTGTTTGATCCAAATCGTCCGA 151100 28 100.0 32 ............................ CTTATCTGGGTTCTATTGTTGATACATTTAAT 151040 28 100.0 33 ............................ TTGTTGTAAATACGATTTGTTCAGACATGGGGA 150979 28 100.0 32 ............................ TTCATCAGCAAAGACCAGAACACGTTCTGGAT 150919 28 100.0 32 ............................ TCTCTCCAGTCTTTAATTAAGGCACGGCAATA 150859 28 96.4 32 ...........................A CAGTTGCGACCGGAGATTTGACTCGCACCAAT 150799 28 92.9 32 ...........T...............A TAACAGGCATTTTGCCACATCATAAAATCAAT 150739 28 78.6 0 .G..A..A..A.............AT.. | ========== ====== ====== ====== ============================ ================================== ================== 16 28 98.0 32 GTTTGATGCCGCATAGGCAGCTTAGAAT # Left flank : TGGAATTTATGCAATTGCAAAATCCACATTCGCCATTGACTGCATTACTGGGTAAATTGCCTTTGAATAAAGTCCAATCTCACCTTATGCCATTACAATCATTGCAATATATTCTCTGGTATCTGCACACCTATCTTGAACATGATGAAGATTATCGTGATGCCATTGCAAGCCTAGATAAACCCACACATTTTATTATTGGGAAACAATCTTCTTTATATGGATATCATGGACAACTGGAAATTGCCCAACAACTTGATGATGCAACCATTCATCTTATGGACAAATCCGGGCATGTGCCATTAATGTCAGAACCGGTGAAATTTGGTAAAATTTTAAATGAATTTTTACGTGCTTCCTAAATCTAAAACCCCAATTTTTTTAACATTCTTTTATATCTTGTTGAATCAATATTTTAGAATCACAGTTTAAAACTTTGGTGTTTTATTAATTTTCGCTCTAATGCTTTAAAATAGCTTAGCTTTTTTTAAAAATTTTAA # Right flank : TATTTAAAATGATACTGCTGCATCCATGTATCAATCAATGCTACAGTTTGCGGCATAAATTGTCCCATGTCATACATATGGTCCGAACCTTTTAACTCAATATAGGTGGCGTTTTTATATTTTTTTGCTGTGGCTTTGGCTATTTTTGCTACCACAATTTTATCATCCGTTCCGGAAATCACCAGTACCGGGGTTTGGATTGCATCGGTATCGACAGTTGCTGCTTTTTTTCGATCCAAAAACCAAAATGCTATTTCGGCATAGACCCGTCCGGATTCTGCCACCAAGCTTTGATAAAATTGCTGACGTAAATGTTCCGGCTGATGATTCATGCAATACTTAAAGACTCGATCTTCGGTAGGAAACAAAGGCTTTTTCCAGAAACCCCATTGTAAATAATGCCGATAAAATGCTGCCAACATGGTGGGATATAATGCAAAAATACCTGCCATCGGTGCAGGTCCCAATAATACAACACCCTTATGATAATCCGGATGTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATGCCGCATAGGCAGCTTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 864301-857848 **** Predicted by CRISPRDetect 2.4 *** >NZ_OANT01000001.1 Acinetobacter puyangensis strain ANC 4466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 864300 28 100.0 32 ............................ ACCCCAGCGTTTGACATCCTCTTGAGAGAAGA 864240 28 100.0 32 ............................ ATTAGCAGGTTCAGTAATTTTTTCGTAACGTA 864180 28 100.0 32 ............................ TTTAACATTGGCAAATGTCTTAAAAATGACTA 864120 28 100.0 32 ............................ TACTTCAAAAAGTCCTGATACAAATATGGTCG 864060 28 100.0 33 ............................ CTGATGATATTTTTAAAAGAGGTAAGCAATTGA 863999 28 100.0 33 ............................ CTAAGCCTGTATTAATTCGTCGTCCTGCAAAAA 863938 28 100.0 32 ............................ AGCAGGGTCATATTTTCCACCAAAGCCTGTAT 863878 28 100.0 32 ............................ ACTCACAAACAATACTAGCCCAAGAACAAAAC 863818 28 100.0 32 ............................ CATGAAATCGTTTGACCATGAAAATTGTAATC 863758 28 100.0 32 ............................ TATTTATCAATTGCTTATTTAATTCAACACAC 863698 28 100.0 32 ............................ AATTAATAATGCAGACAATATTACAATTAAAA 863638 28 100.0 32 ............................ CTGCGGTTGAACACTTGCTGTTGTTACACCAT 863578 28 100.0 32 ............................ TCTTGTCACCCGTAGATTTACAAACTGTTGTA 863518 28 100.0 32 ............................ GCCAATCGCCAAGCCTTGACCTATGGTTAAAG 863458 28 100.0 32 ............................ GTATCTATGAACGGGGTAAAAAAGAAGGTGAT 863398 28 100.0 32 ............................ CAACTAACCTTTGGCAACTTATTCGTTATCAA 863338 28 100.0 32 ............................ CAACTAACCTTTGGCAACTTATTCGTTATCAA 863278 28 100.0 32 ............................ ATCTTTAGAGTGGACTTAAGTCCGATATATCG 863218 28 100.0 32 ............................ TTACACAACAGTTTGTAAATCGACTGGTGCAA 863158 28 100.0 32 ............................ CCACTGGTTCTACATTCTCATATACATTTTCT 863098 28 100.0 32 ............................ TTCTACATTTTCAGAAGTTGCTTCAGATCAAA 863038 28 100.0 32 ............................ GCCTGAAAATACAGGAACTTGTTTTACTTGAT 862978 28 100.0 32 ............................ TACACAACAGTTTGTAAATCGACTGGTGCAAA 862918 28 100.0 32 ............................ TGATAATCTTGTTCTCGTTGTTCTGTAGTACG 862858 28 100.0 32 ............................ CAAGCTCGGATTGATCAAAAGAGAATGTAACC 862798 28 100.0 32 ............................ TTCCATAGCTACAGCAAGATTGCCAGCCATTA 862738 28 100.0 32 ............................ ATAACAGGTGACATTAAGAATGTCAACTTGTC 862678 28 100.0 32 ............................ TTCATGCTGAGCAGATGGCATTAAGTGGAACT 862618 28 100.0 32 ............................ GAACCATGCGCAAACACATATTGCACGACATG 862558 28 100.0 32 ............................ ACACCAAAGAAAGAACGTGAACAGCTTTTATC 862498 28 100.0 32 ............................ TGCTGCGTCCCAACTTTTCGACGAGGCGCGTC 862438 28 100.0 33 ............................ ATTGACCACACTGGACGCATTACAAGAACAAGC 862377 28 100.0 32 ............................ TCTGTATTTCTAATGCATGCTTAATTGTGCTA 862317 28 100.0 32 ............................ TATGAAGGTTAGGCATATCAGAAGAAATAGAA 862257 28 100.0 32 ............................ AAAGGATGCGAACGGCAATGTCTTGTTTTCTG 862197 28 100.0 32 ............................ TGTACGCGCTGTTGCTCTGTTCCAAATCCCGT 862137 28 100.0 32 ............................ AAAAGTACGGCTTTGAAGTCATGAAGACTAAA 862077 28 100.0 32 ............................ CTGCTAAGAATGCTGACCATATTACTGTTTAT 862017 28 100.0 32 ............................ GTAAAGCTTGATGAAGCCGATCACAAGTATTT 861957 28 100.0 32 ............................ AGACATGTATTTTTTACAATCAGACTGCGAAA 861897 28 100.0 32 ............................ GAATATAAAAAGAATTCTTAGCATTAATCATC 861837 28 100.0 32 ............................ TTAACATAAACTTTACGAGCAAAACGCTTGCA 861777 28 100.0 32 ............................ TTCAAGATGAATAATACTACCAGCCCCAACTC 861717 28 100.0 32 ............................ TACCGTTATAATGCGCTTTATCGCGCTAATCA 861657 28 100.0 32 ............................ GTCGCTGCCCAATGCGGGCCAATCATGGGCTC 861597 28 100.0 32 ............................ ATTATTGCCACTCCTCTAGCCCTTCAGCCAAA 861537 28 100.0 32 ............................ AGAAGGTGTAACGCTTGATGAAGCCCTAATAA 861477 28 100.0 32 ............................ GAACTCGTTCCAAATCCCCAATGCATTTGTAG 861417 28 100.0 32 ............................ TCCTATCACTAGGGCATATATGCCTAGGAAAA 861357 28 100.0 32 ............................ ACCCCATGAGATGCGATCCGAGTATTCCACCA 861297 28 100.0 32 ............................ TGACCAACCTTTGGTGAGAGAATCAACCTTAA 861237 28 100.0 32 ............................ AAGATGCAGCAAGCTAGGGAACAAGGTTTAAT 861177 28 100.0 32 ............................ TCGTTAAGTATTGCAGCAGCATGCATTAATCC 861117 28 100.0 32 ............................ AAAGTCTTTAGATAGATGAGAAAGACGAACCG 861057 28 100.0 32 ............................ TGATAAAGAGCAACAAATACAACAAATATTAA 860997 28 100.0 32 ............................ ATTACTCGCACACCAGCCACCACACCCTAAGG 860937 28 100.0 32 ............................ TGAACCCCTGAAAGATTTTCACCCTAACCACT 860877 28 100.0 32 ............................ TTGCAAACTTGGCAACGTATGGCAACCAGTGA 860817 28 100.0 32 ............................ AGTCGAGCGTTAATTGTGTTGTTAGTCGTGGT 860757 28 100.0 32 ............................ AATATTTGCAAGGTACATACGGCGAAGGAGAA 860697 28 100.0 32 ............................ AAGGACAAGTTGCACAGCTTGTAAATCACCCA 860637 28 100.0 32 ............................ TGGCTAAATCCTGATGTGGCGTAAAATGCCAA 860577 28 100.0 32 ............................ CGGATAATCTTTGTAAAACTGCCCATACGTGT 860517 28 100.0 32 ............................ ATTACCCCCATATTATAAAAGGGGGCAGCTTC 860457 28 100.0 32 ............................ GGGGCAATTTTAAGTACAAATACCGTTGAACA 860397 28 100.0 32 ............................ GGACGGAATTTTTTAAGACTATTTCGGACTCG 860337 28 100.0 32 ............................ CAAATATTGCATAAACATCTTACCTTTTATAT 860277 28 100.0 32 ............................ AACCTCATGATCTTGAAGATGAACACGTACAC 860217 28 100.0 32 ............................ ATACGTTCCTAATTCCGTTGAAGTCAGTACAG 860157 28 100.0 32 ............................ ATTTTTACTCAAATGACGAAAGTAGCTCGTAC 860097 28 100.0 32 ............................ AATCAGCTTTTAAAATAAGAACAGCACCATTC 860037 28 100.0 32 ............................ CAACAACAAATCCATACGGCGCGGGTCATAAC 859977 28 100.0 32 ............................ GACGATTGAACTTGTCGAACCAAAGGTCAAAT 859917 28 100.0 32 ............................ TTCGGAAGATTCCGGTTTTTATTCATTGGGTT 859857 28 100.0 32 ............................ ATATTCAATTTACGAACTAAATCAGAAAGCGG 859797 28 100.0 32 ............................ GATGGGTTCTAGTTGATAAACCCTAAATTGGC 859737 28 100.0 32 ............................ CAATTAAATGAGTATGATCAAGCGGGCTGCCG 859677 28 100.0 32 ............................ CCTAGGTGGCTGCGATGCCCGTCATCATATTT 859617 28 100.0 32 ............................ AACTGCTGGTTTTACAAATTTCAAAGCATCAA 859557 28 100.0 32 ............................ GTCCGACGTCGACGCAAGCGCCGCATCCAACA 859497 28 100.0 32 ............................ TGCATAGGACAAGGTTCTAAATTATAGGCTTG 859437 28 100.0 32 ............................ GGCATTTAAAGCATCAACTTTCGCATTCAAAG 859377 28 100.0 32 ............................ AGTGGAAAATCCATATTTGGTAAAGTATCAAT 859317 28 100.0 33 ............................ ATCCAAAGAAAAATATGCATTATTGCAGCAAGA 859256 28 100.0 32 ............................ GCCGAGAACTGGTAAATCACTCTATATGGTCT 859196 28 100.0 32 ............................ ATAAACGATCTGCATCTTAAATGATGTTGATA 859136 28 100.0 32 ............................ GACCCTGTGTATGTGAAATTTGTACCGGAAAT 859076 28 100.0 32 ............................ CATGGAATATTTTCCCGGAAGACTACGCCACC 859016 28 100.0 32 ............................ CATCGCCAATTTGATTGCATTTTGGGGACTGA 858956 28 100.0 32 ............................ AAACACCACCATCCCAACCTGTTGTCGTACGA 858896 28 100.0 32 ............................ GATGTAAAAATGTTCATAAACTGGTGTACCGA 858836 28 100.0 32 ............................ AGTCAAAGGATTTCAGAGTGATGTGTTAGATA 858776 28 100.0 32 ............................ AACCCATACATATTAAATGGCGTTTCATAATA 858716 28 100.0 32 ............................ TAACTTTTCAGCAGAAAAAAACAAGGATAGTG 858656 28 100.0 33 ............................ CTGATTCCAAGCCCAATCTGGTGAAATCAAATC 858595 28 100.0 32 ............................ CAGTTCTTTACGGATATTTTCAACAATGCCGT 858535 28 100.0 32 ............................ TAGGGCAATCACAACGATTGCAATAATTACAA 858475 28 100.0 32 ............................ AATCATGCGGTTGATTCATCTCACTGGAGAAA 858415 28 100.0 32 ............................ AGACACCACCAGTGTCGATGTATGCTGTGGTG 858355 28 96.4 32 ...T........................ TTTGTCTGCATCAATGATCAATGCTTTGTTTG 858295 28 100.0 33 ............................ CTTACTTACATCAAAAGCACCAGATTTAGTTTC 858234 28 100.0 32 ............................ ATGCGAGCAGGGGAGTTAATGGGGCTTGAATG 858174 28 100.0 32 ............................ TTTGATTCCTTTACTGTTATTGTTGTAATTGA 858114 28 100.0 32 ............................ ATTTAAGTAATTTTCCATACGTTTTGATAAGT 858054 28 100.0 32 ............................ ACAAGGCATGGCGATTGATTTTGAATCAGCTG 857994 28 100.0 32 ............................ ACCACCCGTTCGCGTAGTGATTGCTGATGTTG 857934 28 100.0 32 ............................ TTTACGGGATAGAGCATCTTAAAAGCGTCGTG 857874 27 85.7 0 ...T.-............T........T | ========== ====== ====== ====== ============================ ================================= ================== 108 28 99.8 32 GTTCACGGTGGCATACACCGCTTAGAAA # Left flank : TACAACAGCTTTATCTCGATAAATGGCTTGATCGTTTCACAGATTATGTACATACCACAAGCCCAAGAGAAGTCCCACAAGCAAAAATTACAGGATATGCTTGTTATTTTAAAGCAAATCCTAAATTGACGACTGCACAACGGATTGCACATCAGGCAGCTCGACGTAATATTTCATTAAATGAAGCAGAAGCCCATTTTAAAGATTTAAACCAACAGCCTAATGCTGAACCTTATATCAATTTAAAAAGTTTAAGCCATGATATAAAGTTTAGACTTTATATCGGGAAAACCCTCGCTGATGAAGCGAATAATGAAAAATTTGGGACATATGGACTCAGCCGAACAGCGACTGTTCCTGAGTTTTAACCCAATATTTTTTGATCTCTTTAACAGCTTAATAAAATCAATAAGTTATAGCTTTGCTTAAAAACTTTGGGTATTTATTACTTTTTAGAGTTAAGGCACTGTTATAACTTTATTTTTTGCTTTATGATTACT # Right flank : CCTTAAAAATTCTTTACTCTACCGCATAGGTCGCTTACAAAGATGTAAAACTTCATCAAGACAACCTAATAATCCTTAAGATCATAGGCTGTCTTGATGTTATCAAACAAAAATTATTCAATACTTAAAGTTTCATGCTTACACCAATTTGAAATCCACGCCCGGGAAGTGGTGCAATATATTTTAATGGTGAATTTTGTGGTCGGGCATCTTCATCTAACAAATTTGAACCATTTAAAAACACATCAAAATCTGCATTATGTAGTTTTAAATGTTTACGAATTTGTAGATCAACCATGTTATATGCAGGTAAAGGAATTTCCTGAGATACATTTTTACCCAGATACTGAGGTTTATCATAATAAATACTGGATAATCGGGCCGACCAATCATTTTTCTCCCATTCAATATTTGCCCCATAACGGTTGGTCGGCATATTCGGTAAATAATTGCCGTCATTAAACAGGCTATATTGATTCGGATTAAGGTTCTTGTTTTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGTGGCATACACCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //